HEADER RNA BINDING PROTEIN 22-MAY-19 6RT7 TITLE THE YTH DOMAIN OF YTHDC1 PROTEIN IN COMPLEX WITH GM6ACU TITLE 2 OLIGONUCLEOTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*(6MZ)P*C)-3'); COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: YTH DOMAIN-CONTAINING PROTEIN 1; COMPND 7 CHAIN: B, C; COMPND 8 SYNONYM: SPLICING FACTOR YT521,YT521-B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: YTHDC1, KIAA1966, YT521; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN-RNA INTERACTION, EPITRANSCRIPTOMICS, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.BEDI,P.SLEDZ,A.CAFLISCH REVDAT 3 24-JAN-24 6RT7 1 REMARK REVDAT 2 18-DEC-19 6RT7 1 JRNL REVDAT 1 27-NOV-19 6RT7 0 JRNL AUTH Y.LI,R.K.BEDI,L.WIEDMER,D.HUANG,P.SLEDZ,A.CAFLISCH JRNL TITL FLEXIBLE BINDING OF M6A READER PROTEIN YTHDC1 TO ITS JRNL TITL 2 PREFERRED RNA MOTIF. JRNL REF J CHEM THEORY COMPUT V. 15 7004 2019 JRNL REFN ISSN 1549-9626 JRNL PMID 31670957 JRNL DOI 10.1021/ACS.JCTC.9B00987 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 33711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6071 - 4.1654 0.99 2320 147 0.1666 0.2014 REMARK 3 2 4.1654 - 3.3067 0.98 2273 144 0.1837 0.2267 REMARK 3 3 3.3067 - 2.8889 0.98 2295 140 0.2104 0.2505 REMARK 3 4 2.8889 - 2.6248 0.99 2273 139 0.2234 0.2891 REMARK 3 5 2.6248 - 2.4367 0.99 2300 134 0.2319 0.2921 REMARK 3 6 2.4367 - 2.2930 0.99 2267 150 0.2277 0.3129 REMARK 3 7 2.2930 - 2.1782 0.98 2263 141 0.2526 0.3177 REMARK 3 8 2.1782 - 2.0834 0.99 2252 142 0.2522 0.3099 REMARK 3 9 2.0834 - 2.0032 0.98 2255 145 0.2623 0.3645 REMARK 3 10 2.0032 - 1.9341 0.98 2290 136 0.2927 0.3376 REMARK 3 11 1.9341 - 1.8736 0.98 2233 157 0.3371 0.4017 REMARK 3 12 1.8736 - 1.8200 0.98 2241 127 0.3287 0.3890 REMARK 3 13 1.8200 - 1.7721 0.98 2264 153 0.3623 0.3887 REMARK 3 14 1.7721 - 1.7289 0.95 2193 137 0.3781 0.4094 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2708 REMARK 3 ANGLE : 0.821 3679 REMARK 3 CHIRALITY : 0.052 408 REMARK 3 PLANARITY : 0.006 446 REMARK 3 DIHEDRAL : 9.179 1873 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RT7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33768 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 40.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.380 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.31 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS AT PH 6.5, 0.2 M REMARK 280 AMMONIUM SULFATE AND 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G A 0 REMARK 465 U A 3 REMARK 465 GLY B 422 REMARK 465 GLY B 423 REMARK 465 SER B 424 REMARK 465 PRO B 425 REMARK 465 ARG B 508 REMARK 465 HIS B 509 REMARK 465 ARG C 508 REMARK 465 HIS C 509 REMARK 465 G E 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 6MZ A 1 O1P O2P P REMARK 470 C A 2 C5' C4' O4' C3' O3' C2' O2' REMARK 470 C A 2 C1' N1 C2 O2 N3 C4 N4 REMARK 470 C A 2 C5 C6 REMARK 470 LYS B 374 CD CE NZ REMARK 470 ARG B 395 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 427 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 435 OG REMARK 470 LYS B 437 CG CD CE NZ REMARK 470 LYS B 444 CE NZ REMARK 470 LYS B 457 CE NZ REMARK 470 GLU B 483 CD OE1 OE2 REMARK 470 HIS B 505 CG ND1 CD2 CE1 NE2 REMARK 470 ASP C 354 CG OD1 OD2 REMARK 470 LYS C 374 CE NZ REMARK 470 LYS C 385 CG CD CE NZ REMARK 470 ARG C 404 CG CD NE CZ NH1 NH2 REMARK 470 HIS C 420 CG ND1 CD2 CE1 NE2 REMARK 470 HIS C 427 CG ND1 CD2 CE1 NE2 REMARK 470 LYS C 437 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 505 7.77 -68.64 REMARK 500 HIS C 427 57.41 -93.37 REMARK 500 LEU C 439 34.60 -95.07 REMARK 500 LYS C 506 38.23 -89.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 6MZ E 1 and C E 2 DBREF 6RT7 A 0 3 PDB 6RT7 6RT7 0 3 DBREF 6RT7 B 345 509 UNP Q96MU7 YTDC1_HUMAN 345 509 DBREF 6RT7 C 345 509 UNP Q96MU7 YTDC1_HUMAN 345 509 DBREF 6RT7 E 0 3 PDB 6RT7 6RT7 0 3 SEQADV 6RT7 GLY B 344 UNP Q96MU7 EXPRESSION TAG SEQADV 6RT7 GLY C 344 UNP Q96MU7 EXPRESSION TAG SEQRES 1 A 4 G 6MZ C U SEQRES 1 B 166 GLY THR SER LYS LEU LYS TYR VAL LEU GLN ASP ALA ARG SEQRES 2 B 166 PHE PHE LEU ILE LYS SER ASN ASN HIS GLU ASN VAL SER SEQRES 3 B 166 LEU ALA LYS ALA LYS GLY VAL TRP SER THR LEU PRO VAL SEQRES 4 B 166 ASN GLU LYS LYS LEU ASN LEU ALA PHE ARG SER ALA ARG SEQRES 5 B 166 SER VAL ILE LEU ILE PHE SER VAL ARG GLU SER GLY LYS SEQRES 6 B 166 PHE GLN GLY PHE ALA ARG LEU SER SER GLU SER HIS HIS SEQRES 7 B 166 GLY GLY SER PRO ILE HIS TRP VAL LEU PRO ALA GLY MET SEQRES 8 B 166 SER ALA LYS MET LEU GLY GLY VAL PHE LYS ILE ASP TRP SEQRES 9 B 166 ILE CYS ARG ARG GLU LEU PRO PHE THR LYS SER ALA HIS SEQRES 10 B 166 LEU THR ASN PRO TRP ASN GLU HIS LYS PRO VAL LYS ILE SEQRES 11 B 166 GLY ARG ASP GLY GLN GLU ILE GLU LEU GLU CYS GLY THR SEQRES 12 B 166 GLN LEU CYS LEU LEU PHE PRO PRO ASP GLU SER ILE ASP SEQRES 13 B 166 LEU TYR GLN VAL ILE HIS LYS MET ARG HIS SEQRES 1 C 166 GLY THR SER LYS LEU LYS TYR VAL LEU GLN ASP ALA ARG SEQRES 2 C 166 PHE PHE LEU ILE LYS SER ASN ASN HIS GLU ASN VAL SER SEQRES 3 C 166 LEU ALA LYS ALA LYS GLY VAL TRP SER THR LEU PRO VAL SEQRES 4 C 166 ASN GLU LYS LYS LEU ASN LEU ALA PHE ARG SER ALA ARG SEQRES 5 C 166 SER VAL ILE LEU ILE PHE SER VAL ARG GLU SER GLY LYS SEQRES 6 C 166 PHE GLN GLY PHE ALA ARG LEU SER SER GLU SER HIS HIS SEQRES 7 C 166 GLY GLY SER PRO ILE HIS TRP VAL LEU PRO ALA GLY MET SEQRES 8 C 166 SER ALA LYS MET LEU GLY GLY VAL PHE LYS ILE ASP TRP SEQRES 9 C 166 ILE CYS ARG ARG GLU LEU PRO PHE THR LYS SER ALA HIS SEQRES 10 C 166 LEU THR ASN PRO TRP ASN GLU HIS LYS PRO VAL LYS ILE SEQRES 11 C 166 GLY ARG ASP GLY GLN GLU ILE GLU LEU GLU CYS GLY THR SEQRES 12 C 166 GLN LEU CYS LEU LEU PHE PRO PRO ASP GLU SER ILE ASP SEQRES 13 C 166 LEU TYR GLN VAL ILE HIS LYS MET ARG HIS SEQRES 1 E 4 G 6MZ C U HET 6MZ A 1 20 HET 6MZ E 1 24 HET SO4 B 601 5 HET SO4 B 602 5 HET SO4 C 601 5 HET SO4 C 602 5 HET SO4 C 603 5 HETNAM 6MZ N6-METHYLADENOSINE-5'-MONOPHOSPHATE HETNAM SO4 SULFATE ION FORMUL 1 6MZ 2(C11 H16 N5 O7 P) FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 HOH *145(H2 O) HELIX 1 AA1 THR B 345 GLN B 353 1 9 HELIX 2 AA2 ASN B 364 GLY B 375 1 12 HELIX 3 AA3 LEU B 380 ALA B 394 1 15 HELIX 4 AA4 THR B 456 ALA B 459 5 4 HELIX 5 AA5 ASN B 463 GLU B 467 5 5 HELIX 6 AA6 GLU B 481 PHE B 492 1 12 HELIX 7 AA7 ASP B 499 HIS B 505 1 7 HELIX 8 AA8 THR C 345 GLN C 353 1 9 HELIX 9 AA9 ASN C 364 GLY C 375 1 12 HELIX 10 AB1 LEU C 380 ALA C 394 1 15 HELIX 11 AB2 THR C 456 SER C 458 5 3 HELIX 12 AB3 ASN C 463 GLU C 467 5 5 HELIX 13 AB4 GLU C 481 PHE C 492 1 12 HELIX 14 AB5 LEU C 500 LYS C 506 1 7 SHEET 1 AA1 6 VAL B 376 SER B 378 0 SHEET 2 AA1 6 VAL B 442 CYS B 449 -1 O PHE B 443 N TRP B 377 SHEET 3 AA1 6 GLY B 411 LEU B 415 -1 N ARG B 414 O ASP B 446 SHEET 4 AA1 6 VAL B 397 VAL B 403 -1 N LEU B 399 O ALA B 413 SHEET 5 AA1 6 ARG B 356 SER B 362 1 N ARG B 356 O ILE B 398 SHEET 6 AA1 6 GLU B 479 ILE B 480 -1 O ILE B 480 N PHE B 357 SHEET 1 AA2 2 LYS B 408 PHE B 409 0 SHEET 2 AA2 2 LEU B 453 PRO B 454 -1 O LEU B 453 N PHE B 409 SHEET 1 AA3 4 VAL C 376 TRP C 377 0 SHEET 2 AA3 4 PHE C 443 CYS C 449 -1 O PHE C 443 N TRP C 377 SHEET 3 AA3 4 LYS C 408 LEU C 415 -1 N PHE C 412 O ILE C 448 SHEET 4 AA3 4 LEU C 453 PRO C 454 -1 O LEU C 453 N PHE C 409 SHEET 1 AA4 6 VAL C 376 TRP C 377 0 SHEET 2 AA4 6 PHE C 443 CYS C 449 -1 O PHE C 443 N TRP C 377 SHEET 3 AA4 6 LYS C 408 LEU C 415 -1 N PHE C 412 O ILE C 448 SHEET 4 AA4 6 SER C 396 VAL C 403 -1 N LEU C 399 O ALA C 413 SHEET 5 AA4 6 ALA C 355 SER C 362 1 N ARG C 356 O ILE C 398 SHEET 6 AA4 6 GLU C 479 ILE C 480 -1 O ILE C 480 N PHE C 357 LINK O3' 6MZ A 1 P C A 2 1555 1555 1.62 LINK O3' 6MZ E 1 P C E 2 1555 1555 1.62 SITE 1 AC1 4 GLY B 344 SER B 346 LYS B 347 HOH B 701 SITE 1 AC2 4 ASN B 363 PRO B 431 ALA B 432 HIS C 505 SITE 1 AC3 5 ARG C 451 GLU C 452 HOH C 710 HOH C 712 SITE 2 AC3 5 HOH C 742 SITE 1 AC4 6 LYS B 386 GLN B 478 GLU B 479 GLY C 344 SITE 2 AC4 6 LYS C 347 HOH C 736 SITE 1 AC5 3 HIS C 420 HIS C 421 ARG C 451 SITE 1 AC6 16 LYS B 361 SER B 362 ASN B 363 ASN B 367 SITE 2 AC6 16 TRP B 377 SER B 378 ARG B 404 TRP B 428 SITE 3 AC6 16 MET B 434 ILE B 473 GLY B 474 ARG B 475 SITE 4 AC6 16 ASP B 476 HOH B 721 U E 3 HOH E 101 CRYST1 39.850 103.460 42.007 90.00 104.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025094 0.000000 0.006674 0.00000 SCALE2 0.000000 0.009666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024633 0.00000 HETATM 1 C2 6MZ A 1 3.458 -0.586 6.550 1.00 34.56 C HETATM 2 C4 6MZ A 1 2.433 1.018 5.132 1.00 40.32 C HETATM 3 C5 6MZ A 1 1.855 0.017 4.446 1.00 37.40 C HETATM 4 N9 6MZ A 1 2.052 2.194 4.540 1.00 40.49 N HETATM 5 N3 6MZ A 1 3.226 0.725 6.174 1.00 39.80 N HETATM 6 N1 6MZ A 1 2.867 -1.590 5.866 1.00 38.71 N HETATM 7 C6 6MZ A 1 2.078 -1.308 4.830 1.00 37.83 C HETATM 8 N6 6MZ A 1 1.414 -2.449 4.052 1.00 35.28 N HETATM 9 C9 6MZ A 1 1.514 -3.861 4.549 1.00 34.08 C HETATM 10 N7 6MZ A 1 1.113 0.553 3.461 1.00 35.72 N HETATM 11 C8 6MZ A 1 1.227 1.914 3.532 1.00 39.97 C HETATM 12 O5' 6MZ A 1 0.088 5.865 7.853 1.00 53.44 O HETATM 13 C5' 6MZ A 1 0.098 5.844 6.432 1.00 42.22 C HETATM 14 C4' 6MZ A 1 1.431 5.381 5.901 1.00 46.91 C HETATM 15 O4' 6MZ A 1 1.509 3.943 5.970 1.00 44.43 O HETATM 16 C1' 6MZ A 1 2.495 3.494 5.082 1.00 41.47 C HETATM 17 C2' 6MZ A 1 2.696 4.582 4.007 1.00 42.61 C HETATM 18 O2' 6MZ A 1 4.034 5.050 4.098 1.00 40.39 O HETATM 19 C3' 6MZ A 1 1.722 5.695 4.436 1.00 43.78 C HETATM 20 O3' 6MZ A 1 2.270 7.000 4.269 1.00 53.57 O