HEADER FLAVOPROTEIN 24-MAY-19 6RTJ TITLE THIOREDOXIN GLUTATHIONE REDUCTASE FROM SCHISTOSOMA MANSONI IN COMPLEX TITLE 2 WITH 1-[(DIMETHYLAMINO)METHYL]-2-NAPHTHOL AT 1 HOUR OF SOAKING COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN GLUTATHIONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.8.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_TAXID: 6183; SOURCE 4 GENE: SMP_048430; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FRAGMENT, SECONDARY SITE, SCHISTOSOMIASIS, FAD/NAD LINKED REDUCTASE, KEYWDS 2 FLAVOPROTEIN, TIME-RESOLVED STRUCTURAL STUDIES EXPDTA X-RAY DIFFRACTION AUTHOR F.ANGELUCCI,I.SILVESTRI,F.FATA,D.L.WILLIAMS REVDAT 5 24-JAN-24 6RTJ 1 REMARK REVDAT 4 30-MAR-22 6RTJ 1 REMARK REVDAT 3 29-JUL-20 6RTJ 1 JRNL LINK REVDAT 2 15-JAN-20 6RTJ 1 JRNL REVDAT 1 08-JAN-20 6RTJ 0 JRNL AUTH I.SILVESTRI,H.LYU,F.FATA,P.R.BANTA,B.MATTEI,R.IPPOLITI, JRNL AUTH 2 A.BELLELLI,G.PITARI,M.ARDINI,V.PETUKHOVA,G.R.J.THATCHER, JRNL AUTH 3 P.A.PETUKHOV,D.L.WILLIAMS,F.ANGELUCCI JRNL TITL ECTOPIC SUICIDE INHIBITION OF THIOREDOXIN GLUTATHIONE JRNL TITL 2 REDUCTASE. JRNL REF FREE RADIC BIOL MED V. 147 200 2020 JRNL REFN ESSN 1873-4596 JRNL PMID 31870799 JRNL DOI 10.1016/J.FREERADBIOMED.2019.12.019 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.15.2_3472: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 51628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8027 - 5.3328 0.98 2628 142 0.1876 0.2040 REMARK 3 2 5.3328 - 4.2343 0.99 2571 162 0.1514 0.1765 REMARK 3 3 4.2343 - 3.6995 0.99 2600 124 0.1533 0.1983 REMARK 3 4 3.6995 - 3.3615 0.99 2619 128 0.1646 0.2102 REMARK 3 5 3.3615 - 3.1206 0.99 2574 152 0.1781 0.2024 REMARK 3 6 3.1206 - 2.9367 0.99 2539 165 0.1999 0.2330 REMARK 3 7 2.9367 - 2.7897 0.99 2592 128 0.1983 0.2768 REMARK 3 8 2.7897 - 2.6683 0.99 2587 150 0.1968 0.2242 REMARK 3 9 2.6683 - 2.5656 0.99 2598 134 0.1927 0.2563 REMARK 3 10 2.5656 - 2.4770 0.99 2630 99 0.2029 0.2575 REMARK 3 11 2.4770 - 2.3996 0.99 2584 123 0.1984 0.2505 REMARK 3 12 2.3996 - 2.3310 0.99 2572 141 0.1927 0.2757 REMARK 3 13 2.3310 - 2.2697 0.99 2539 155 0.1959 0.2387 REMARK 3 14 2.2697 - 2.2143 0.99 2578 144 0.1992 0.2534 REMARK 3 15 2.2143 - 2.1640 0.99 2523 151 0.2130 0.2992 REMARK 3 16 2.1640 - 2.1179 0.99 2616 126 0.2190 0.2287 REMARK 3 17 2.1179 - 2.0755 0.98 2552 121 0.2327 0.3028 REMARK 3 18 2.0755 - 2.0364 0.99 2545 132 0.2395 0.3082 REMARK 3 19 2.0364 - 2.0000 0.99 2562 142 0.2556 0.2801 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4698 REMARK 3 ANGLE : 1.146 6369 REMARK 3 CHIRALITY : 0.063 722 REMARK 3 PLANARITY : 0.008 800 REMARK 3 DIHEDRAL : 18.304 1722 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51649 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 39.790 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2V6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, BISTRIS 0.1M PH 7.0, 0.2M REMARK 280 KI, 5MM DTT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.33250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.09350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.33250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 51.09350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 SER A 594 REMARK 465 GLY A 595 REMARK 465 CYS A 596 REMARK 465 SEC A 597 REMARK 465 GLY A 598 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 506 OD1 ASP A 517 1.54 REMARK 500 O TYR A 92 H ASP A 95 1.56 REMARK 500 OG1 THR A 418 OD1 ASP A 420 2.14 REMARK 500 OE2 GLU A 462 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 159 CB CYS A 159 SG -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 159 CA - CB - SG ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 27 57.23 -94.53 REMARK 500 ASP A 84 -169.39 -75.87 REMARK 500 ASP A 95 51.93 38.92 REMARK 500 VAL A 157 33.87 -140.60 REMARK 500 ALA A 256 48.70 -145.69 REMARK 500 ALA A 294 18.10 -145.35 REMARK 500 SER A 318 -66.42 -137.73 REMARK 500 PHE A 474 54.55 -90.69 REMARK 500 ASP A 530 51.58 -114.87 REMARK 500 HIS A 582 -23.76 -140.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 447 OE1 REMARK 620 2 ASP A 565 O 152.3 REMARK 620 3 THR A 567 O 158.7 6.5 REMARK 620 4 THR A 579 O 152.8 8.6 8.9 REMARK 620 5 HOH A 907 O 161.4 11.3 5.9 8.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FXH A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 605 DBREF 6RTJ A 1 598 UNP G4V8J4 G4V8J4_SCHMA 1 598 SEQRES 1 A 598 MET PRO PRO ALA ASP GLY THR SER GLN TRP LEU ARG LYS SEQRES 2 A 598 THR VAL ASP SER ALA ALA VAL ILE LEU PHE SER LYS THR SEQRES 3 A 598 THR CYS PRO TYR CYS LYS LYS VAL LYS ASP VAL LEU ALA SEQRES 4 A 598 GLU ALA LYS ILE LYS HIS ALA THR ILE GLU LEU ASP GLN SEQRES 5 A 598 LEU SER ASN GLY SER ALA ILE GLN LYS CYS LEU ALA SER SEQRES 6 A 598 PHE SER LYS ILE GLU THR VAL PRO GLN MET PHE VAL ARG SEQRES 7 A 598 GLY LYS PHE ILE GLY ASP SER GLN THR VAL LEU LYS TYR SEQRES 8 A 598 TYR SER ASN ASP GLU LEU ALA GLY ILE VAL ASN GLU SER SEQRES 9 A 598 LYS TYR ASP TYR ASP LEU ILE VAL ILE GLY GLY GLY SER SEQRES 10 A 598 GLY GLY LEU ALA ALA GLY LYS GLU ALA ALA LYS TYR GLY SEQRES 11 A 598 ALA LYS THR ALA VAL LEU ASP TYR VAL GLU PRO THR PRO SEQRES 12 A 598 ILE GLY THR THR TRP GLY LEU GLY GLY THR CYS VAL ASN SEQRES 13 A 598 VAL GLY CYS ILE PRO LYS LYS LEU MET HIS GLN ALA GLY SEQRES 14 A 598 LEU LEU SER HIS ALA LEU GLU ASP ALA GLU HIS PHE GLY SEQRES 15 A 598 TRP SER LEU ASP ARG SER LYS ILE SER HIS ASN TRP SER SEQRES 16 A 598 THR MET VAL GLU GLY VAL GLN SER HIS ILE GLY SER LEU SEQRES 17 A 598 ASN TRP GLY TYR LYS VAL ALA LEU ARG ASP ASN GLN VAL SEQRES 18 A 598 THR TYR LEU ASN ALA LYS GLY ARG LEU ILE SER PRO HIS SEQRES 19 A 598 GLU VAL GLN ILE THR ASP LYS ASN GLN LYS VAL SER THR SEQRES 20 A 598 ILE THR GLY ASN LYS ILE ILE LEU ALA THR GLY GLU ARG SEQRES 21 A 598 PRO LYS TYR PRO GLU ILE PRO GLY ALA VAL GLU TYR GLY SEQRES 22 A 598 ILE THR SER ASP ASP LEU PHE SER LEU PRO TYR PHE PRO SEQRES 23 A 598 GLY LYS THR LEU VAL ILE GLY ALA SER TYR VAL ALA LEU SEQRES 24 A 598 GLU CYS ALA GLY PHE LEU ALA SER LEU GLY GLY ASP VAL SEQRES 25 A 598 THR VAL MET VAL ARG SER ILE LEU LEU ARG GLY PHE ASP SEQRES 26 A 598 GLN GLN MET ALA GLU LYS VAL GLY ASP TYR MET GLU ASN SEQRES 27 A 598 HIS GLY VAL LYS PHE ALA LYS LEU CYS VAL PRO ASP GLU SEQRES 28 A 598 ILE LYS GLN LEU LYS VAL VAL ASP THR GLU ASN ASN LYS SEQRES 29 A 598 PRO GLY LEU LEU LEU VAL LYS GLY HIS TYR THR ASP GLY SEQRES 30 A 598 LYS LYS PHE GLU GLU GLU PHE GLU THR VAL ILE PHE ALA SEQRES 31 A 598 VAL GLY ARG GLU PRO GLN LEU SER LYS VAL LEU CYS GLU SEQRES 32 A 598 THR VAL GLY VAL LYS LEU ASP LYS ASN GLY ARG VAL VAL SEQRES 33 A 598 CYS THR ASP ASP GLU GLN THR THR VAL SER ASN VAL TYR SEQRES 34 A 598 ALA ILE GLY ASP ILE ASN ALA GLY LYS PRO GLN LEU THR SEQRES 35 A 598 PRO VAL ALA ILE GLN ALA GLY ARG TYR LEU ALA ARG ARG SEQRES 36 A 598 LEU PHE ALA GLY ALA THR GLU LEU THR ASP TYR SER ASN SEQRES 37 A 598 VAL ALA THR THR VAL PHE THR PRO LEU GLU TYR GLY ALA SEQRES 38 A 598 CYS GLY LEU SER GLU GLU ASP ALA ILE GLU LYS TYR GLY SEQRES 39 A 598 ASP LYS ASP ILE GLU VAL TYR HIS SER ASN PHE LYS PRO SEQRES 40 A 598 LEU GLU TRP THR VAL ALA HIS ARG GLU ASP ASN VAL CYS SEQRES 41 A 598 TYR MET LYS LEU VAL CYS ARG LYS SER ASP ASN MET ARG SEQRES 42 A 598 VAL LEU GLY LEU HIS VAL LEU GLY PRO ASN ALA GLY GLU SEQRES 43 A 598 ILE THR GLN GLY TYR ALA VAL ALA ILE LYS MET GLY ALA SEQRES 44 A 598 THR LYS ALA ASP PHE ASP ARG THR ILE GLY ILE HIS PRO SEQRES 45 A 598 THR CYS SER GLU THR PHE THR THR LEU HIS VAL THR LYS SEQRES 46 A 598 LYS SER GLY VAL SER PRO ILE VAL SER GLY CYS SEC GLY HET FAD A 601 83 HET PG4 A 602 31 HET FXH A 603 30 HET PGE A 604 24 HET CA A 605 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM FXH 1-[(DIMETHYLAMINO)METHYL]NAPHTHALEN-2-OL HETNAM PGE TRIETHYLENE GLYCOL HETNAM CA CALCIUM ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 PG4 C8 H18 O5 FORMUL 4 FXH C13 H15 N O FORMUL 5 PGE C6 H14 O4 FORMUL 6 CA CA 2+ FORMUL 7 HOH *338(H2 O) HELIX 1 AA1 GLY A 6 ALA A 18 1 13 HELIX 2 AA2 CYS A 28 ALA A 41 1 14 HELIX 3 AA3 ASP A 51 LEU A 53 5 3 HELIX 4 AA4 ASN A 55 LEU A 63 1 9 HELIX 5 AA5 LEU A 63 LYS A 68 1 6 HELIX 6 AA6 ASP A 84 ASN A 94 1 11 HELIX 7 AA7 GLU A 96 ASN A 102 1 7 HELIX 8 AA8 GLY A 116 TYR A 129 1 14 HELIX 9 AA9 GLY A 151 GLY A 158 1 8 HELIX 10 AB1 GLY A 158 PHE A 181 1 24 HELIX 11 AB2 ASP A 186 ILE A 190 5 5 HELIX 12 AB3 ASN A 193 ASN A 219 1 27 HELIX 13 AB4 GLY A 268 GLY A 273 1 6 HELIX 14 AB5 SER A 276 PHE A 280 1 5 HELIX 15 AB6 SER A 295 LEU A 308 1 14 HELIX 16 AB7 ASP A 325 HIS A 339 1 15 HELIX 17 AB8 LEU A 397 VAL A 400 5 4 HELIX 18 AB9 CYS A 402 GLY A 406 5 5 HELIX 19 AC1 GLY A 432 ASN A 435 5 4 HELIX 20 AC2 LEU A 441 GLY A 459 1 19 HELIX 21 AC3 SER A 485 GLY A 494 1 10 HELIX 22 AC4 LEU A 508 ALA A 513 1 6 HELIX 23 AC5 SER A 529 ASN A 531 5 3 HELIX 24 AC6 ASN A 543 MET A 557 1 15 HELIX 25 AC7 THR A 560 THR A 567 1 8 HELIX 26 AC8 CYS A 574 THR A 580 5 7 SHEET 1 AA1 4 ALA A 46 GLU A 49 0 SHEET 2 AA1 4 VAL A 20 SER A 24 1 N VAL A 20 O ALA A 46 SHEET 3 AA1 4 GLN A 74 VAL A 77 -1 O GLN A 74 N PHE A 23 SHEET 4 AA1 4 LYS A 80 GLY A 83 -1 O ILE A 82 N MET A 75 SHEET 1 AA2 6 THR A 222 LEU A 224 0 SHEET 2 AA2 6 THR A 133 LEU A 136 1 N VAL A 135 O THR A 222 SHEET 3 AA2 6 TYR A 108 ILE A 113 1 N VAL A 112 O LEU A 136 SHEET 4 AA2 6 VAL A 245 LEU A 255 1 O ILE A 254 N ILE A 113 SHEET 5 AA2 6 GLU A 235 THR A 239 -1 N VAL A 236 O ILE A 248 SHEET 6 AA2 6 LYS A 227 SER A 232 -1 N ARG A 229 O GLN A 237 SHEET 1 AA3 5 THR A 222 LEU A 224 0 SHEET 2 AA3 5 THR A 133 LEU A 136 1 N VAL A 135 O THR A 222 SHEET 3 AA3 5 TYR A 108 ILE A 113 1 N VAL A 112 O LEU A 136 SHEET 4 AA3 5 VAL A 245 LEU A 255 1 O ILE A 254 N ILE A 113 SHEET 5 AA3 5 VAL A 428 ALA A 430 1 O TYR A 429 N LEU A 255 SHEET 1 AA4 2 GLU A 259 PRO A 261 0 SHEET 2 AA4 2 ARG A 393 PRO A 395 -1 O GLU A 394 N ARG A 260 SHEET 1 AA5 5 ILE A 274 THR A 275 0 SHEET 2 AA5 5 THR A 386 PHE A 389 1 O PHE A 389 N ILE A 274 SHEET 3 AA5 5 THR A 289 ILE A 292 1 N ILE A 292 O ILE A 388 SHEET 4 AA5 5 VAL A 312 VAL A 316 1 O THR A 313 N VAL A 291 SHEET 5 AA5 5 VAL A 341 LYS A 345 1 O ALA A 344 N VAL A 314 SHEET 1 AA6 3 CYS A 347 LYS A 356 0 SHEET 2 AA6 3 LEU A 367 TYR A 374 -1 O LYS A 371 N ASP A 350 SHEET 3 AA6 3 LYS A 379 PHE A 384 -1 O PHE A 384 N LEU A 368 SHEET 1 AA7 5 THR A 471 VAL A 473 0 SHEET 2 AA7 5 TYR A 479 GLY A 483 -1 O TYR A 479 N VAL A 473 SHEET 3 AA7 5 VAL A 534 LEU A 540 -1 O VAL A 539 N GLY A 480 SHEET 4 AA7 5 CYS A 520 ARG A 527 -1 N TYR A 521 O LEU A 540 SHEET 5 AA7 5 ILE A 498 PHE A 505 -1 N GLU A 499 O CYS A 526 SSBOND 1 CYS A 28 CYS A 31 1555 1555 2.05 SSBOND 2 CYS A 154 CYS A 159 1555 1555 1.97 LINK OE1 GLN A 447 CA CA A 605 1555 2555 2.66 LINK O ASP A 565 CA CA A 605 1555 1555 2.65 LINK O THR A 567 CA CA A 605 1555 1555 2.65 LINK O THR A 579 CA CA A 605 1555 1555 2.65 LINK CA CA A 605 O HOH A 907 1555 1555 2.78 CISPEP 1 VAL A 72 PRO A 73 0 5.45 CISPEP 2 HIS A 571 PRO A 572 0 -2.71 SITE 1 AC1 35 GLY A 114 GLY A 115 GLY A 116 SER A 117 SITE 2 AC1 35 GLY A 118 ASP A 137 TYR A 138 GLY A 152 SITE 3 AC1 35 THR A 153 CYS A 154 GLY A 158 CYS A 159 SITE 4 AC1 35 LYS A 162 ALA A 226 LYS A 227 GLY A 228 SITE 5 AC1 35 ALA A 256 THR A 257 GLY A 258 TYR A 296 SITE 6 AC1 35 VAL A 297 ARG A 393 VAL A 400 GLY A 432 SITE 7 AC1 35 ASP A 433 GLN A 440 LEU A 441 THR A 442 SITE 8 AC1 35 PRO A 443 HIS A 571 PRO A 572 HOH A 719 SITE 9 AC1 35 HOH A 768 HOH A 821 HOH A 829 SITE 1 AC2 3 ASP A 488 GLU A 491 LYS A 492 SITE 1 AC3 5 VAL A 316 LEU A 320 GLU A 330 ASP A 334 SITE 2 AC3 5 PHE A 343 SITE 1 AC4 4 TYR A 138 THR A 239 ASP A 240 LYS A 241 SITE 1 AC5 5 GLN A 447 ASP A 565 THR A 567 THR A 579 SITE 2 AC5 5 HOH A 907 CRYST1 142.665 102.187 58.521 90.00 112.89 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007009 0.000000 0.002960 0.00000 SCALE2 0.000000 0.009786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018549 0.00000