HEADER PROTEIN BINDING 28-MAY-19 6RUG TITLE CO-SUBSTITUTED ALPHA-KEGGIN BOUND TO PROTEINASE K SOLVED BY MR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEINASE K; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOPEPTIDASE K,TRITIRACHIUM ALKALINE PROTEINASE; COMPND 5 EC: 3.4.21.64; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARENGYODONTIUM ALBUM; SOURCE 3 ORGANISM_COMMON: TRITIRACHIUM ALBUM; SOURCE 4 ORGANISM_TAXID: 37998; SOURCE 5 GENE: PROK; SOURCE 6 EXPRESSION_SYSTEM: PARENGYODONTIUM ALBUM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 37998 KEYWDS POLYOXOMETALATE, COMPLEX, ALPHA-KEGGIN, PROTEINASE K, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.BREIBECK,A.BIJELIC,A.ROMPEL REVDAT 4 16-OCT-24 6RUG 1 REMARK REVDAT 3 24-JAN-24 6RUG 1 REMARK LINK REVDAT 2 02-OCT-19 6RUG 1 JRNL REVDAT 1 18-SEP-19 6RUG 0 JRNL AUTH J.BREIBECK,A.BIJELIC,A.ROMPEL JRNL TITL TRANSITION METAL-SUBSTITUTED KEGGIN POLYOXOTUNGSTATES JRNL TITL 2 ENABLING COVALENT ATTACHMENT TO PROTEINASE K UPON JRNL TITL 3 CO-CRYSTALLIZATION. JRNL REF CHEM.COMMUN.(CAMB.) V. 55 11519 2019 JRNL REFN ESSN 1364-548X JRNL PMID 31490500 JRNL DOI 10.1039/C9CC05818D REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 184012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0134 - 3.4175 1.00 5863 312 0.1545 0.1593 REMARK 3 2 3.4175 - 2.7129 1.00 5863 306 0.1436 0.1483 REMARK 3 3 2.7129 - 2.3700 1.00 5870 307 0.1439 0.1592 REMARK 3 4 2.3700 - 2.1534 1.00 5874 303 0.1379 0.1249 REMARK 3 5 2.1534 - 1.9990 1.00 5853 313 0.1317 0.1220 REMARK 3 6 1.9990 - 1.8812 1.00 5897 302 0.1249 0.1382 REMARK 3 7 1.8812 - 1.7870 1.00 5832 314 0.1213 0.1314 REMARK 3 8 1.7870 - 1.7092 1.00 5866 307 0.1194 0.1375 REMARK 3 9 1.7092 - 1.6434 1.00 5910 316 0.1154 0.1213 REMARK 3 10 1.6434 - 1.5867 1.00 5857 305 0.1113 0.1359 REMARK 3 11 1.5867 - 1.5371 1.00 5862 310 0.1139 0.1253 REMARK 3 12 1.5371 - 1.4931 1.00 5892 309 0.1134 0.1420 REMARK 3 13 1.4931 - 1.4538 1.00 5813 304 0.1154 0.1224 REMARK 3 14 1.4538 - 1.4184 1.00 5844 306 0.1188 0.1370 REMARK 3 15 1.4184 - 1.3861 1.00 5860 311 0.1256 0.1335 REMARK 3 16 1.3861 - 1.3566 1.00 5884 313 0.1360 0.1687 REMARK 3 17 1.3566 - 1.3295 1.00 5858 308 0.1464 0.1517 REMARK 3 18 1.3295 - 1.3044 1.00 5883 308 0.1512 0.1670 REMARK 3 19 1.3044 - 1.2811 1.00 5824 304 0.1587 0.1816 REMARK 3 20 1.2811 - 1.2594 1.00 5937 319 0.1629 0.1882 REMARK 3 21 1.2594 - 1.2391 1.00 5802 309 0.1655 0.1831 REMARK 3 22 1.2391 - 1.2200 1.00 5884 307 0.1679 0.1881 REMARK 3 23 1.2200 - 1.2021 1.00 5864 309 0.1699 0.1913 REMARK 3 24 1.2021 - 1.1851 1.00 5860 309 0.1714 0.1849 REMARK 3 25 1.1851 - 1.1691 1.00 5807 305 0.1853 0.1963 REMARK 3 26 1.1691 - 1.1539 1.00 5881 317 0.1984 0.2165 REMARK 3 27 1.1539 - 1.1395 0.99 5812 300 0.2198 0.2453 REMARK 3 28 1.1395 - 1.1258 0.98 5709 296 0.2444 0.2624 REMARK 3 29 1.1258 - 1.1127 0.96 5614 296 0.2695 0.2922 REMARK 3 30 1.1127 - 1.1002 0.89 5236 276 0.2949 0.3093 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2228 REMARK 3 ANGLE : 1.565 3278 REMARK 3 CHIRALITY : 0.078 314 REMARK 3 PLANARITY : 0.007 372 REMARK 3 DIHEDRAL : 14.479 732 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1292102609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 184016 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.17430 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1IC6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE (PH 5.5), 0.7 REMARK 280 -1.2 M AMMONIUM SULPHATE, 2.5 MM CO-SUBSTITUTED ALPHA-KEGGIN, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.15000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.93000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.93000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 76.72500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.93000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.93000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.57500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.93000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.93000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 76.72500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.93000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.93000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 25.57500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 579 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 278 REMARK 465 ALA A 279 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 34 HG CYS A 123 1.44 REMARK 500 HH12 ARG A 250 O HOH A 408 1.59 REMARK 500 HB3 ASN A 276 O HOH A 401 1.60 REMARK 500 OH TYR A 186 O58 WCO A 302 1.69 REMARK 500 O HOH A 428 O HOH A 572 1.76 REMARK 500 OD1 ASN A 276 O HOH A 401 1.87 REMARK 500 O HOH A 407 O HOH A 578 1.92 REMARK 500 O HOH A 473 O HOH A 651 1.97 REMARK 500 O HOH A 436 O HOH A 661 2.00 REMARK 500 O58 WCO A 301 O HOH A 402 2.03 REMARK 500 O HOH A 657 O HOH A 667 2.09 REMARK 500 CB ASN A 276 O HOH A 401 2.13 REMARK 500 O HOH A 414 O HOH A 571 2.14 REMARK 500 O63 WCO A 301 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 627 O HOH A 627 8665 0.92 REMARK 500 O HOH A 624 O HOH A 674 8765 1.92 REMARK 500 O HOH A 496 O HOH A 674 8765 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 39 -146.46 -167.53 REMARK 500 ASP A 207 61.65 62.73 REMARK 500 ASN A 270 74.02 -109.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCO A 302 W19 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 186 OH REMARK 620 2 WCO A 302 O46 108.3 REMARK 620 3 WCO A 302 O47 111.1 86.7 REMARK 620 4 WCO A 302 O57 88.3 94.6 159.2 REMARK 620 5 WCO A 302 O58 15.3 101.9 97.2 102.8 REMARK 620 6 WCO A 302 O59 174.5 71.5 74.5 86.2 169.4 REMARK 620 7 WCO A 302 O68 95.6 155.6 89.2 81.0 102.5 84.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCO A 302 CO1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 207 OD2 REMARK 620 2 WCO A 302 O61 150.9 REMARK 620 3 WCO A 302 O75 120.9 87.3 REMARK 620 4 WCO A 302 O76 101.4 85.0 88.8 REMARK 620 5 WCO A 302 O77 85.7 66.4 153.4 84.5 REMARK 620 6 WCO A 302 O78 103.7 68.6 86.1 153.3 88.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCO A 301 W19 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 402 O REMARK 620 2 WCO A 301 O46 142.3 REMARK 620 3 WCO A 301 O47 75.8 86.6 REMARK 620 4 WCO A 301 O57 119.4 89.7 155.6 REMARK 620 5 WCO A 301 O58 50.3 103.3 101.6 102.8 REMARK 620 6 WCO A 301 O59 131.3 71.9 73.9 82.0 173.4 REMARK 620 7 WCO A 301 O68 56.2 157.2 87.8 86.4 99.5 85.3 REMARK 620 8 HOH A 414 O 69.9 72.5 62.6 138.4 49.1 124.4 123.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCO A 301 W14 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 403 O REMARK 620 2 WCO A 301 O43 148.7 REMARK 620 3 WCO A 301 O47 120.2 90.8 REMARK 620 4 WCO A 301 O48 68.9 103.2 102.3 REMARK 620 5 WCO A 301 O49 70.5 83.6 152.1 105.7 REMARK 620 6 WCO A 301 O59 119.1 71.7 71.4 171.5 80.9 REMARK 620 7 WCO A 301 O63 43.5 155.7 85.8 101.0 88.2 84.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCO A 301 W20 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 403 O REMARK 620 2 WCO A 301 O62 129.5 REMARK 620 3 WCO A 301 O63 54.0 84.3 REMARK 620 4 WCO A 301 O64 67.1 84.5 85.5 REMARK 620 5 WCO A 301 O69 123.4 72.2 85.4 155.7 REMARK 620 6 WCO A 301 O70 59.9 170.0 101.7 103.8 100.1 REMARK 620 7 WCO A 301 O71 143.0 71.8 155.9 89.1 90.0 102.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCO A 301 CO1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 478 O REMARK 620 2 WCO A 301 O61 158.0 REMARK 620 3 WCO A 301 O75 106.9 86.5 REMARK 620 4 WCO A 301 O76 109.2 88.4 86.7 REMARK 620 5 WCO A 301 O77 93.6 72.4 158.9 91.3 REMARK 620 6 WCO A 301 O78 91.0 71.8 88.0 159.8 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 WCO A 302 W15 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 404 O REMARK 620 2 WCO A 302 O44 61.9 REMARK 620 3 WCO A 302 O49 110.0 90.8 REMARK 620 4 WCO A 302 O50 40.5 101.4 102.9 REMARK 620 5 WCO A 302 O51 91.6 85.7 153.4 103.7 REMARK 620 6 WCO A 302 O60 130.4 71.0 84.2 169.9 69.7 REMARK 620 7 WCO A 302 O64 143.1 154.6 83.3 104.0 88.6 83.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WCO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue WCO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 DBREF 6RUG A 1 279 UNP P06873 PRTK_PARAQ 106 384 SEQADV 6RUG ASP A 207 UNP P06873 SER 312 CONFLICT SEQRES 1 A 279 ALA ALA GLN THR ASN ALA PRO TRP GLY LEU ALA ARG ILE SEQRES 2 A 279 SER SER THR SER PRO GLY THR SER THR TYR TYR TYR ASP SEQRES 3 A 279 GLU SER ALA GLY GLN GLY SER CYS VAL TYR VAL ILE ASP SEQRES 4 A 279 THR GLY ILE GLU ALA SER HIS PRO GLU PHE GLU GLY ARG SEQRES 5 A 279 ALA GLN MET VAL LYS THR TYR TYR TYR SER SER ARG ASP SEQRES 6 A 279 GLY ASN GLY HIS GLY THR HIS CYS ALA GLY THR VAL GLY SEQRES 7 A 279 SER ARG THR TYR GLY VAL ALA LYS LYS THR GLN LEU PHE SEQRES 8 A 279 GLY VAL LYS VAL LEU ASP ASP ASN GLY SER GLY GLN TYR SEQRES 9 A 279 SER THR ILE ILE ALA GLY MET ASP PHE VAL ALA SER ASP SEQRES 10 A 279 LYS ASN ASN ARG ASN CYS PRO LYS GLY VAL VAL ALA SER SEQRES 11 A 279 LEU SER LEU GLY GLY GLY TYR SER SER SER VAL ASN SER SEQRES 12 A 279 ALA ALA ALA ARG LEU GLN SER SER GLY VAL MET VAL ALA SEQRES 13 A 279 VAL ALA ALA GLY ASN ASN ASN ALA ASP ALA ARG ASN TYR SEQRES 14 A 279 SER PRO ALA SER GLU PRO SER VAL CYS THR VAL GLY ALA SEQRES 15 A 279 SER ASP ARG TYR ASP ARG ARG SER SER PHE SER ASN TYR SEQRES 16 A 279 GLY SER VAL LEU ASP ILE PHE GLY PRO GLY THR ASP ILE SEQRES 17 A 279 LEU SER THR TRP ILE GLY GLY SER THR ARG SER ILE SER SEQRES 18 A 279 GLY THR SER MET ALA THR PRO HIS VAL ALA GLY LEU ALA SEQRES 19 A 279 ALA TYR LEU MET THR LEU GLY LYS THR THR ALA ALA SER SEQRES 20 A 279 ALA CYS ARG TYR ILE ALA ASP THR ALA ASN LYS GLY ASP SEQRES 21 A 279 LEU SER ASN ILE PRO PHE GLY THR VAL ASN LEU LEU ALA SEQRES 22 A 279 TYR ASN ASN TYR GLN ALA HET WCO A 301 52 HET WCO A 302 52 HET SO4 A 303 5 HETNAM WCO CO-SUBSTITUTED ALPHA-KEGGIN HETNAM SO4 SULFATE ION FORMUL 2 WCO 2(CO O39 P W11) FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *304(H2 O) HELIX 1 AA1 PRO A 7 SER A 14 1 8 HELIX 2 AA2 HIS A 46 GLU A 50 5 5 HELIX 3 AA3 GLY A 68 SER A 79 1 12 HELIX 4 AA4 GLN A 103 LYS A 118 1 16 HELIX 5 AA5 ASN A 119 ARG A 121 5 3 HELIX 6 AA6 SER A 138 SER A 151 1 14 HELIX 7 AA7 ASP A 165 ARG A 167 5 3 HELIX 8 AA8 GLY A 222 LEU A 240 1 19 HELIX 9 AA9 SER A 247 ALA A 256 1 10 SHEET 1 AA1 2 ALA A 2 GLN A 3 0 SHEET 2 AA1 2 TYR A 23 TYR A 24 -1 O TYR A 23 N GLN A 3 SHEET 1 AA2 7 ALA A 53 THR A 58 0 SHEET 2 AA2 7 GLN A 89 LYS A 94 1 O GLY A 92 N GLN A 54 SHEET 3 AA2 7 SER A 33 ASP A 39 1 N VAL A 35 O GLN A 89 SHEET 4 AA2 7 GLY A 126 LEU A 131 1 O SER A 130 N TYR A 36 SHEET 5 AA2 7 VAL A 153 ALA A 158 1 O MET A 154 N ALA A 129 SHEET 6 AA2 7 CYS A 178 SER A 183 1 O CYS A 178 N VAL A 157 SHEET 7 AA2 7 ILE A 201 PRO A 204 1 O ILE A 201 N GLY A 181 SHEET 1 AA3 2 GLY A 135 GLY A 136 0 SHEET 2 AA3 2 TYR A 169 SER A 170 -1 O SER A 170 N GLY A 135 SHEET 1 AA4 2 ILE A 208 TRP A 212 0 SHEET 2 AA4 2 SER A 216 ILE A 220 -1 O ILE A 220 N ILE A 208 SHEET 1 AA5 2 ASN A 257 LYS A 258 0 SHEET 2 AA5 2 LEU A 271 LEU A 272 -1 O LEU A 272 N ASN A 257 SSBOND 1 CYS A 34 CYS A 123 1555 1555 2.07 SSBOND 2 CYS A 178 CYS A 249 1555 1555 2.14 LINK OH TYR A 186 W19 WCO A 302 1555 1555 3.25 LINK OD2 ASP A 207 CO1 WCO A 302 1555 1555 1.73 LINK W19 WCO A 301 O HOH A 402 1555 1555 2.63 LINK W14 WCO A 301 O HOH A 403 1555 1555 3.13 LINK W20 WCO A 301 O HOH A 403 1555 1555 2.67 LINK W19 WCO A 301 O HOH A 414 1555 1555 3.28 LINK CO1 WCO A 301 O HOH A 478 1555 1555 2.09 LINK W15 WCO A 302 O HOH A 404 1555 1555 3.21 CISPEP 1 SER A 170 PRO A 171 0 2.49 SITE 1 AC1 24 ILE A 42 GLU A 43 ALA A 44 SER A 45 SITE 2 AC1 24 GLN A 54 MET A 55 SER A 63 ARG A 64 SITE 3 AC1 24 LYS A 258 GLY A 259 ASN A 270 HOH A 402 SITE 4 AC1 24 HOH A 403 HOH A 414 HOH A 478 HOH A 495 SITE 5 AC1 24 HOH A 499 HOH A 514 HOH A 547 HOH A 551 SITE 6 AC1 24 HOH A 571 HOH A 592 HOH A 611 HOH A 636 SITE 1 AC2 17 SER A 140 ASP A 184 ARG A 185 TYR A 186 SITE 2 AC2 17 ARG A 188 ASP A 207 THR A 244 ALA A 245 SITE 3 AC2 17 ALA A 246 HOH A 404 HOH A 563 HOH A 596 SITE 4 AC2 17 HOH A 599 HOH A 601 HOH A 618 HOH A 628 SITE 5 AC2 17 HOH A 639 SITE 1 AC3 6 PRO A 7 TRP A 8 ARG A 185 HOH A 466 SITE 2 AC3 6 HOH A 492 HOH A 565 CRYST1 67.860 67.860 102.300 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009775 0.00000