HEADER SIGNALING PROTEIN 03-JUN-19 6RW2 TITLE BICYCLE TOXIN CONJUGATE BOUND TO EPHA2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPHRIN TYPE-A RECEPTOR 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK; COMPND 5 EC: 2.7.10.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALA-ARG-ASP-CYS-PRO-LEU-VAL-ASN-PRO-LEU-CYS-LEU-HIS-PRO- COMPND 9 GLY-TRP-THR-CYS; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPHA2, ECK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS EPHA2, INHIBITOR, COMPLEX, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.G.BROWN,S.SCHROEDER,L.CHEN REVDAT 3 06-MAY-20 6RW2 1 JRNL REVDAT 2 22-APR-20 6RW2 1 JRNL REVDAT 1 08-APR-20 6RW2 0 JRNL AUTH G.E.MUDD,A.BROWN,L.CHEN,K.VAN RIETSCHOTEN,S.WATCHAM, JRNL AUTH 2 D.P.TEUFEL,S.PAVAN,R.LANI,P.HUXLEY,G.S.BENNETT JRNL TITL IDENTIFICATION AND OPTIMIZATION OF EPHA2-SELECTIVE BICYCLES JRNL TITL 2 FOR THE DELIVERY OF CYTOTOXIC PAYLOADS. JRNL REF J.MED.CHEM. V. 63 4107 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32202781 JRNL DOI 10.1021/ACS.JMEDCHEM.9B02129 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 14234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 780 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 934 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1546 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : 1.55000 REMARK 3 B33 (A**2) : -0.35000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.225 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.207 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1637 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1471 ; 0.035 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2221 ; 2.019 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3406 ; 3.068 ; 1.600 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 195 ; 9.582 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 88 ;34.244 ;22.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 262 ;16.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;18.963 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 199 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1848 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 366 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 780 ; 3.644 ; 4.285 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 779 ; 3.644 ; 4.285 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 975 ; 5.627 ; 6.416 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6RW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102715. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5-5.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15014 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 58.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.93500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE 0.2M LITHIUM REMARK 280 SULPHATE 8-10% PEG 6000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.04500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.48000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.04500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.48000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.04500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.84000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.48000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.04500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.84000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.48000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 ARG A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 GLY A 20 REMARK 465 ALA A 21 REMARK 465 SER A 22 REMARK 465 ASP A 23 REMARK 465 ASP A 24 REMARK 465 ASP A 25 REMARK 465 ASP A 26 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 49 O HOH A 401 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 133 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 48 -94.59 44.90 REMARK 500 CYS A 70 57.18 -154.05 REMARK 500 ARG B 0 93.00 21.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 47 TYR A 48 147.18 REMARK 500 GLY A 49 LYS A 50 141.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 29N B 101 DBREF 6RW2 A 27 201 UNP P29317 EPHA2_HUMAN 27 201 DBREF 6RW2 B -1 16 PDB 6RW2 6RW2 -1 16 SEQADV 6RW2 ALA A 9 UNP P29317 EXPRESSION TAG SEQADV 6RW2 SER A 10 UNP P29317 EXPRESSION TAG SEQADV 6RW2 ARG A 11 UNP P29317 EXPRESSION TAG SEQADV 6RW2 GLY A 12 UNP P29317 EXPRESSION TAG SEQADV 6RW2 SER A 13 UNP P29317 EXPRESSION TAG SEQADV 6RW2 HIS A 14 UNP P29317 EXPRESSION TAG SEQADV 6RW2 HIS A 15 UNP P29317 EXPRESSION TAG SEQADV 6RW2 HIS A 16 UNP P29317 EXPRESSION TAG SEQADV 6RW2 HIS A 17 UNP P29317 EXPRESSION TAG SEQADV 6RW2 HIS A 18 UNP P29317 EXPRESSION TAG SEQADV 6RW2 HIS A 19 UNP P29317 EXPRESSION TAG SEQADV 6RW2 GLY A 20 UNP P29317 EXPRESSION TAG SEQADV 6RW2 ALA A 21 UNP P29317 EXPRESSION TAG SEQADV 6RW2 SER A 22 UNP P29317 EXPRESSION TAG SEQADV 6RW2 ASP A 23 UNP P29317 EXPRESSION TAG SEQADV 6RW2 ASP A 24 UNP P29317 EXPRESSION TAG SEQADV 6RW2 ASP A 25 UNP P29317 EXPRESSION TAG SEQADV 6RW2 ASP A 26 UNP P29317 EXPRESSION TAG SEQRES 1 A 193 ALA SER ARG GLY SER HIS HIS HIS HIS HIS HIS GLY ALA SEQRES 2 A 193 SER ASP ASP ASP ASP LYS GLU VAL VAL LEU LEU ASP PHE SEQRES 3 A 193 ALA ALA ALA GLY GLY GLU LEU GLY TRP LEU THR HIS PRO SEQRES 4 A 193 TYR GLY LYS GLY TRP ASP LEU MET GLN ASN ILE MET ASN SEQRES 5 A 193 ASP MET PRO ILE TYR MET TYR SER VAL CYS ASN VAL MET SEQRES 6 A 193 SER GLY ASP GLN ASP ASN TRP LEU ARG THR ASN TRP VAL SEQRES 7 A 193 TYR ARG GLY GLU ALA GLU ARG ILE PHE ILE GLU LEU LYS SEQRES 8 A 193 PHE THR VAL ARG ASP CYS ASN SER PHE PRO GLY GLY ALA SEQRES 9 A 193 SER SER CYS LYS GLU THR PHE ASN LEU TYR TYR ALA GLU SEQRES 10 A 193 SER ASP LEU ASP TYR GLY THR ASN PHE GLN LYS ARG LEU SEQRES 11 A 193 PHE THR LYS ILE ASP THR ILE ALA PRO ASP GLU ILE THR SEQRES 12 A 193 VAL SER SER ASP PHE GLU ALA ARG HIS VAL LYS LEU ASN SEQRES 13 A 193 VAL GLU GLU ARG SER VAL GLY PRO LEU THR ARG LYS GLY SEQRES 14 A 193 PHE TYR LEU ALA PHE GLN ASP ILE GLY ALA CYS VAL ALA SEQRES 15 A 193 LEU LEU SER VAL ARG VAL TYR TYR LYS LYS CYS SEQRES 1 B 18 ALA ARG ASP CYS PRO LEU VAL ASN PRO LEU CYS LEU HIS SEQRES 2 B 18 PRO GLY TRP THR CYS HET GOL A 301 6 HET 29N B 101 18 HETNAM GOL GLYCEROL HETNAM 29N 1,1',1''-(1,3,5-TRIAZINANE-1,3,5-TRIYL)TRIPROPAN-1-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 29N 1,1',1''-(1,3,5-TRIAZINANE-1,3,5-TRIYL)TRIPROP-2-EN-1- HETSYN 2 29N ONE, BOUND FORM FORMUL 3 GOL C3 H8 O3 FORMUL 4 29N C12 H21 N3 O3 FORMUL 5 HOH *43(H2 O) HELIX 1 AA1 ALA A 35 ALA A 37 5 3 HELIX 2 AA2 CYS A 105 PHE A 108 5 4 HELIX 3 AA3 GLN A 135 PHE A 139 5 5 HELIX 4 AA4 VAL A 152 ALA A 158 1 7 HELIX 5 AA5 ASN B 6 HIS B 11 5 6 SHEET 1 AA1 4 GLU A 28 ASP A 33 0 SHEET 2 AA1 4 CYS A 188 LYS A 199 -1 O VAL A 196 N LEU A 31 SHEET 3 AA1 4 ILE A 94 ARG A 103 -1 N GLU A 97 O ARG A 195 SHEET 4 AA1 4 ILE A 150 THR A 151 1 O THR A 151 N VAL A 102 SHEET 1 AA2 5 ASP A 53 MET A 59 0 SHEET 2 AA2 5 MET A 62 CYS A 70 -1 O MET A 66 N MET A 55 SHEET 3 AA2 5 CYS A 188 LYS A 199 -1 O LEU A 191 N TYR A 67 SHEET 4 AA2 5 ILE A 94 ARG A 103 -1 N GLU A 97 O ARG A 195 SHEET 5 AA2 5 ASN A 164 VAL A 170 -1 O GLU A 166 N LEU A 98 SHEET 1 AA3 4 LEU A 44 HIS A 46 0 SHEET 2 AA3 4 ASN A 79 ARG A 82 -1 O TRP A 80 N HIS A 46 SHEET 3 AA3 4 GLY A 177 ASP A 184 -1 O ASP A 184 N ASN A 79 SHEET 4 AA3 4 VAL A 86 TYR A 87 -1 N VAL A 86 O PHE A 178 SHEET 1 AA4 5 LEU A 44 HIS A 46 0 SHEET 2 AA4 5 ASN A 79 ARG A 82 -1 O TRP A 80 N HIS A 46 SHEET 3 AA4 5 GLY A 177 ASP A 184 -1 O ASP A 184 N ASN A 79 SHEET 4 AA4 5 PHE A 119 SER A 126 -1 N ASN A 120 O GLN A 183 SHEET 5 AA4 5 THR A 140 ILE A 145 -1 O THR A 140 N TYR A 123 SSBOND 1 CYS A 70 CYS A 188 1555 1555 2.10 SSBOND 2 CYS A 105 CYS A 115 1555 1555 2.07 SSBOND 3 CYS A 201 CYS A 201 1555 3555 1.86 LINK SG CYS B 2 C16 29N B 101 1555 1555 1.75 LINK SG CYS B 9 C25 29N B 101 1555 1555 1.76 LINK SG CYS B 16 C19 29N B 101 1555 1555 1.78 CISPEP 1 HIS A 46 PRO A 47 0 1.21 CISPEP 2 GLY A 171 PRO A 172 0 2.55 SITE 1 AC1 4 TYR A 87 LYS A 116 GLU A 117 THR A 118 SITE 1 AC2 10 MET A 55 MET A 66 ARG B 0 CYS B 2 SITE 2 AC2 10 PRO B 3 LEU B 4 VAL B 5 CYS B 9 SITE 3 AC2 10 TRP B 14 CYS B 16 CRYST1 42.090 113.680 130.960 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008797 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007636 0.00000