HEADER CELL INVASION 10-JUN-19 6RYB TITLE STRUCTURE OF DEUBIQUITINASE FOR PR-UBIQUITINATION 1 -DUP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEPTATION INITIATION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SEPTATION INITIATION PROTEIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: SEPTATION INITIATION PROTEIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 91891; SOURCE 4 GENE: D1H98_09620; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 9 ORGANISM_TAXID: 91891; SOURCE 10 GENE: D1H98_09620; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA; SOURCE 15 ORGANISM_TAXID: 91891; SOURCE 16 GENE: D1H98_09620; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEGIONELLA PNEUMOPHILA, PHOSPHORIBOSE UBIQUITINATION, DEUBIQUITINASE, KEYWDS 2 TOXIN, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR S.DONGHYUK,D.IVAN REVDAT 4 24-JAN-24 6RYB 1 REMARK REVDAT 3 27-MAY-20 6RYB 1 JRNL REVDAT 2 29-JAN-20 6RYB 1 REMARK REVDAT 1 13-NOV-19 6RYB 0 JRNL AUTH D.SHIN,R.MUKHERJEE,Y.LIU,A.GONZALEZ,F.BONN,Y.LIU,V.V.ROGOV, JRNL AUTH 2 M.HEINZ,A.STOLZ,G.HUMMER,V.DOTSCH,Z.Q.LUO,S.BHOGARAJU, JRNL AUTH 3 I.DIKIC JRNL TITL REGULATION OF PHOSPHORIBOSYL-LINKED SERINE UBIQUITINATION BY JRNL TITL 2 DEUBIQUITINASES DUPA AND DUPB. JRNL REF MOL.CELL V. 77 164 2020 JRNL REFN ISSN 1097-2765 JRNL PMID 31732457 JRNL DOI 10.1016/J.MOLCEL.2019.10.019 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 62197 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.220 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5986 - 5.5760 1.00 4803 160 0.1847 0.2217 REMARK 3 2 5.5760 - 4.4268 1.00 4448 147 0.1791 0.1981 REMARK 3 3 4.4268 - 3.8675 1.00 4386 147 0.1841 0.1924 REMARK 3 4 3.8675 - 3.5141 1.00 4315 142 0.2064 0.2507 REMARK 3 5 3.5141 - 3.2622 1.00 4314 144 0.2337 0.2406 REMARK 3 6 3.2622 - 3.0699 1.00 4265 141 0.2480 0.2596 REMARK 3 7 3.0699 - 2.9162 1.00 4211 141 0.2631 0.3478 REMARK 3 8 2.9162 - 2.7893 1.00 4284 142 0.2747 0.3334 REMARK 3 9 2.7893 - 2.6819 1.00 4242 141 0.2685 0.3239 REMARK 3 10 2.6819 - 2.5894 1.00 4192 139 0.2756 0.3158 REMARK 3 11 2.5894 - 2.5084 1.00 4211 140 0.2868 0.3107 REMARK 3 12 2.5084 - 2.4367 1.00 4168 138 0.2948 0.3636 REMARK 3 13 2.4367 - 2.3726 1.00 4231 141 0.3219 0.3982 REMARK 3 14 2.3726 - 2.3147 0.99 4127 137 0.3367 0.3703 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7681 REMARK 3 ANGLE : 0.938 10391 REMARK 3 CHIRALITY : 0.050 1101 REMARK 3 PLANARITY : 0.006 1348 REMARK 3 DIHEDRAL : 5.011 4554 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102034. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62273 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.315 REMARK 200 RESOLUTION RANGE LOW (A) : 47.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.70 REMARK 200 R MERGE (I) : 0.12520 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 2.29600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.12_2829: ???) REMARK 200 STARTING MODEL: 6B7P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 - 20 % PEG3350 / PEG4000, 100 MM REMARK 280 HEPES PH 7.5, 200 MM AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 204.20600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 408.41200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 306.30900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 510.51500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 102.10300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 204.20600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 408.41200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 510.51500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 306.30900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 102.10300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 312 REMARK 465 LYS A 313 REMARK 465 GLU A 314 REMARK 465 ASP A 315 REMARK 465 TYR A 316 REMARK 465 ASP A 317 REMARK 465 VAL A 318 REMARK 465 ASP A 319 REMARK 465 GLU A 320 REMARK 465 VAL A 321 REMARK 465 ILE A 322 REMARK 465 ALA A 323 REMARK 465 LEU A 324 REMARK 465 PRO A 325 REMARK 465 PRO A 326 REMARK 465 GLN A 327 REMARK 465 ILE A 328 REMARK 465 THR A 329 REMARK 465 ILE A 330 REMARK 465 ARG A 331 REMARK 465 GLU A 332 REMARK 465 GLU A 333 REMARK 465 PRO A 334 REMARK 465 PRO A 335 REMARK 465 LYS A 336 REMARK 465 THR A 337 REMARK 465 ASN A 338 REMARK 465 GLU A 339 REMARK 465 SER A 340 REMARK 465 PHE A 341 REMARK 465 LEU A 342 REMARK 465 LEU A 343 REMARK 465 SER A 344 REMARK 465 LEU A 345 REMARK 465 GLU B 314 REMARK 465 ASP B 315 REMARK 465 TYR B 316 REMARK 465 ASP B 317 REMARK 465 VAL B 318 REMARK 465 ASP B 319 REMARK 465 GLU B 320 REMARK 465 VAL B 321 REMARK 465 ILE B 322 REMARK 465 ALA B 323 REMARK 465 LEU B 324 REMARK 465 PRO B 325 REMARK 465 PRO B 326 REMARK 465 GLN B 327 REMARK 465 ILE B 328 REMARK 465 THR B 329 REMARK 465 ILE B 330 REMARK 465 ARG B 331 REMARK 465 GLU B 332 REMARK 465 GLU B 333 REMARK 465 PRO B 334 REMARK 465 PRO B 335 REMARK 465 LYS B 336 REMARK 465 THR B 337 REMARK 465 ASN B 338 REMARK 465 GLU B 339 REMARK 465 SER B 340 REMARK 465 PHE B 341 REMARK 465 LEU B 342 REMARK 465 LEU B 343 REMARK 465 SER B 344 REMARK 465 LEU B 345 REMARK 465 LYS C 311 REMARK 465 GLU C 312 REMARK 465 LYS C 313 REMARK 465 GLU C 314 REMARK 465 ASP C 315 REMARK 465 TYR C 316 REMARK 465 ASP C 317 REMARK 465 VAL C 318 REMARK 465 ASP C 319 REMARK 465 GLU C 320 REMARK 465 VAL C 321 REMARK 465 ILE C 322 REMARK 465 ALA C 323 REMARK 465 LEU C 324 REMARK 465 PRO C 325 REMARK 465 PRO C 326 REMARK 465 GLN C 327 REMARK 465 ILE C 328 REMARK 465 THR C 329 REMARK 465 ILE C 330 REMARK 465 ARG C 331 REMARK 465 GLU C 332 REMARK 465 GLU C 333 REMARK 465 PRO C 334 REMARK 465 PRO C 335 REMARK 465 LYS C 336 REMARK 465 THR C 337 REMARK 465 ASN C 338 REMARK 465 GLU C 339 REMARK 465 SER C 340 REMARK 465 PHE C 341 REMARK 465 LEU C 342 REMARK 465 LEU C 343 REMARK 465 SER C 344 REMARK 465 LEU C 345 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 280 NZ LYS B 282 1.56 REMARK 500 O HOH A 433 O HOH A 453 1.80 REMARK 500 OE1 GLN C 107 O HOH C 401 1.87 REMARK 500 O HIS B 93 O HOH B 401 1.88 REMARK 500 O HOH C 466 O HOH C 475 1.96 REMARK 500 O HOH B 424 O HOH B 431 1.97 REMARK 500 O HOH B 417 O HOH B 429 2.01 REMARK 500 O VAL C 28 ND2 ASN C 50 2.02 REMARK 500 O ARG A 149 O HOH A 401 2.04 REMARK 500 NE2 GLN A 277 O HOH A 402 2.07 REMARK 500 O PRO A 304 O HOH A 403 2.12 REMARK 500 O HOH A 443 O HOH A 455 2.14 REMARK 500 NH1 ARG B 20 O HOH B 402 2.14 REMARK 500 NZ LYS B 111 O LEU B 155 2.16 REMARK 500 CG ASP B 280 NZ LYS B 282 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 20 -57.24 -138.84 REMARK 500 THR A 38 68.93 -111.16 REMARK 500 GLN A 52 60.67 18.88 REMARK 500 ARG A 64 56.12 37.54 REMARK 500 LEU A 155 -48.99 -131.53 REMARK 500 ASP A 260 -72.36 -40.01 REMARK 500 ARG B 20 -61.00 -136.62 REMARK 500 THR B 42 -169.23 -127.53 REMARK 500 ARG B 64 56.21 35.11 REMARK 500 SER B 125 -179.81 -178.03 REMARK 500 SER B 207 -164.30 -103.56 REMARK 500 HIS B 254 18.82 -66.20 REMARK 500 GLU B 258 145.15 -39.81 REMARK 500 GLN B 277 145.97 -170.81 REMARK 500 ALA B 279 175.26 -59.55 REMARK 500 LYS B 311 127.12 -38.41 REMARK 500 SER C 3 89.17 -64.77 REMARK 500 ARG C 20 -59.31 -131.76 REMARK 500 GLU C 31 5.98 -66.06 REMARK 500 LEU C 155 -39.89 -130.53 REMARK 500 HIS C 206 -57.49 -22.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 59 GLN A 60 149.81 REMARK 500 REMARK 500 REMARK: NULL DBREF 6RYB A 3 345 PDB 6RYB 6RYB 3 345 DBREF 6RYB B 2 345 PDB 6RYB 6RYB 2 345 DBREF 6RYB C -1 345 PDB 6RYB 6RYB -1 345 SEQRES 1 A 343 SER ILE LEU ASP PRO GLU VAL LEU LYS VAL ALA GLU TYR SEQRES 2 A 343 VAL TYR GLN GLU ARG LEU SER LYS PRO TYR THR GLU VAL SEQRES 3 A 343 GLY PRO GLU TRP GLU TYR ASN HIS LYS THR PRO TYR ALA SEQRES 4 A 343 THR ARG ALA THR GLY THR GLY HIS ASN LEU GLN ARG PHE SEQRES 5 A 343 ILE THR ILE ASP ASP GLN ARG LEU HIS ARG PRO ILE HIS SEQRES 6 A 343 GLY LEU ALA HIS THR MET ARG THR LEU PHE TYR SER GLN SEQRES 7 A 343 LEU MET TYR GLU ALA ALA LYS ARG GLN PRO HIS PRO HIS SEQRES 8 A 343 ARG CYS ALA ASP GLY ARG THR ILE ALA ASP LEU SER VAL SEQRES 9 A 343 GLN ASP LEU LYS LYS LEU ASN ILE ALA GLN LEU PHE PHE SEQRES 10 A 343 VAL ALA GLY ARG GLU SER GLU ALA SER TYR GLY ASP ALA SEQRES 11 A 343 TYR HIS ARG TYR HIS LEU TYR GLY ALA LYS GLN PHE GLU SEQRES 12 A 343 ALA TYR ALA ARG LYS HIS LEU THR HIS LEU PHE SER GLU SEQRES 13 A 343 LYS GLU ILE VAL LEU TYR SER ARG CYS ILE GLU ASP ARG SEQRES 14 A 343 ILE GLY ASP ARG PHE ASP GLU THR ALA GLU GLY TYR LEU SEQRES 15 A 343 ILE HIS LEU SER HIS MET ILE ASP LEU MET ARG CYS LYS SEQRES 16 A 343 SER PRO VAL GLU VAL PHE ILE GLY HIS SER ARG GLY VAL SEQRES 17 A 343 SER GLY ILE VAL PRO THR LEU ILE GLN LEU PHE GLY ARG SEQRES 18 A 343 GLU ASP GLY LEU ASP ILE MET HIS TYR ALA ARG SER LEU SEQRES 19 A 343 PHE ALA ALA THR GLY GLU ALA VAL PRO TYR ILE SER SER SEQRES 20 A 343 SER GLU TRP PRO HIS LEU GLY ILE GLU SER ASP ARG VAL SEQRES 21 A 343 GLU ARG ALA LEU LYS ILE VAL GLY SER LEU GLU VAL GLU SEQRES 22 A 343 GLY GLN GLU ALA ASP ALA LYS LYS THR ALA GLN ALA GLY SEQRES 23 A 343 PHE SER VAL ASP GLY CYS TYR GLY ALA LEU VAL LYS ILE SEQRES 24 A 343 ASP THR PRO ASP TRP TYR HIS GLN VAL LYS GLU LYS GLU SEQRES 25 A 343 ASP TYR ASP VAL ASP GLU VAL ILE ALA LEU PRO PRO GLN SEQRES 26 A 343 ILE THR ILE ARG GLU GLU PRO PRO LYS THR ASN GLU SER SEQRES 27 A 343 PHE LEU LEU SER LEU SEQRES 1 B 344 GLY SER ILE LEU ASP PRO GLU VAL LEU LYS VAL ALA GLU SEQRES 2 B 344 TYR VAL TYR GLN GLU ARG LEU SER LYS PRO TYR THR GLU SEQRES 3 B 344 VAL GLY PRO GLU TRP GLU TYR ASN HIS LYS THR PRO TYR SEQRES 4 B 344 ALA THR ARG ALA THR GLY THR GLY HIS ASN LEU GLN ARG SEQRES 5 B 344 PHE ILE THR ILE ASP ASP GLN ARG LEU HIS ARG PRO ILE SEQRES 6 B 344 HIS GLY LEU ALA HIS THR MET ARG THR LEU PHE TYR SER SEQRES 7 B 344 GLN LEU MET TYR GLU ALA ALA LYS ARG GLN PRO HIS PRO SEQRES 8 B 344 HIS ARG CYS ALA ASP GLY ARG THR ILE ALA ASP LEU SER SEQRES 9 B 344 VAL GLN ASP LEU LYS LYS LEU ASN ILE ALA GLN LEU PHE SEQRES 10 B 344 PHE VAL ALA GLY ARG GLU SER GLU ALA SER TYR GLY ASP SEQRES 11 B 344 ALA TYR HIS ARG TYR HIS LEU TYR GLY ALA LYS GLN PHE SEQRES 12 B 344 GLU ALA TYR ALA ARG LYS HIS LEU THR HIS LEU PHE SER SEQRES 13 B 344 GLU LYS GLU ILE VAL LEU TYR SER ARG CYS ILE GLU ASP SEQRES 14 B 344 ARG ILE GLY ASP ARG PHE ASP GLU THR ALA GLU GLY TYR SEQRES 15 B 344 LEU ILE HIS LEU SER HIS MET ILE ASP LEU MET ARG CYS SEQRES 16 B 344 LYS SER PRO VAL GLU VAL PHE ILE GLY HIS SER ARG GLY SEQRES 17 B 344 VAL SER GLY ILE VAL PRO THR LEU ILE GLN LEU PHE GLY SEQRES 18 B 344 ARG GLU ASP GLY LEU ASP ILE MET HIS TYR ALA ARG SER SEQRES 19 B 344 LEU PHE ALA ALA THR GLY GLU ALA VAL PRO TYR ILE SER SEQRES 20 B 344 SER SER GLU TRP PRO HIS LEU GLY ILE GLU SER ASP ARG SEQRES 21 B 344 VAL GLU ARG ALA LEU LYS ILE VAL GLY SER LEU GLU VAL SEQRES 22 B 344 GLU GLY GLN GLU ALA ASP ALA LYS LYS THR ALA GLN ALA SEQRES 23 B 344 GLY PHE SER VAL ASP GLY CYS TYR GLY ALA LEU VAL LYS SEQRES 24 B 344 ILE ASP THR PRO ASP TRP TYR HIS GLN VAL LYS GLU LYS SEQRES 25 B 344 GLU ASP TYR ASP VAL ASP GLU VAL ILE ALA LEU PRO PRO SEQRES 26 B 344 GLN ILE THR ILE ARG GLU GLU PRO PRO LYS THR ASN GLU SEQRES 27 B 344 SER PHE LEU LEU SER LEU SEQRES 1 C 347 GLY ALA MET GLY SER ILE LEU ASP PRO GLU VAL LEU LYS SEQRES 2 C 347 VAL ALA GLU TYR VAL TYR GLN GLU ARG LEU SER LYS PRO SEQRES 3 C 347 TYR THR GLU VAL GLY PRO GLU TRP GLU TYR ASN HIS LYS SEQRES 4 C 347 THR PRO TYR ALA THR ARG ALA THR GLY THR GLY HIS ASN SEQRES 5 C 347 LEU GLN ARG PHE ILE THR ILE ASP ASP GLN ARG LEU HIS SEQRES 6 C 347 ARG PRO ILE HIS GLY LEU ALA HIS THR MET ARG THR LEU SEQRES 7 C 347 PHE TYR SER GLN LEU MET TYR GLU ALA ALA LYS ARG GLN SEQRES 8 C 347 PRO HIS PRO HIS ARG CYS ALA ASP GLY ARG THR ILE ALA SEQRES 9 C 347 ASP LEU SER VAL GLN ASP LEU LYS LYS LEU ASN ILE ALA SEQRES 10 C 347 GLN LEU PHE PHE VAL ALA GLY ARG GLU SER GLU ALA SER SEQRES 11 C 347 TYR GLY ASP ALA TYR HIS ARG TYR HIS LEU TYR GLY ALA SEQRES 12 C 347 LYS GLN PHE GLU ALA TYR ALA ARG LYS HIS LEU THR HIS SEQRES 13 C 347 LEU PHE SER GLU LYS GLU ILE VAL LEU TYR SER ARG CYS SEQRES 14 C 347 ILE GLU ASP ARG ILE GLY ASP ARG PHE ASP GLU THR ALA SEQRES 15 C 347 GLU GLY TYR LEU ILE HIS LEU SER HIS MET ILE ASP LEU SEQRES 16 C 347 MET ARG CYS LYS SER PRO VAL GLU VAL PHE ILE GLY HIS SEQRES 17 C 347 SER ARG GLY VAL SER GLY ILE VAL PRO THR LEU ILE GLN SEQRES 18 C 347 LEU PHE GLY ARG GLU ASP GLY LEU ASP ILE MET HIS TYR SEQRES 19 C 347 ALA ARG SER LEU PHE ALA ALA THR GLY GLU ALA VAL PRO SEQRES 20 C 347 TYR ILE SER SER SER GLU TRP PRO HIS LEU GLY ILE GLU SEQRES 21 C 347 SER ASP ARG VAL GLU ARG ALA LEU LYS ILE VAL GLY SER SEQRES 22 C 347 LEU GLU VAL GLU GLY GLN GLU ALA ASP ALA LYS LYS THR SEQRES 23 C 347 ALA GLN ALA GLY PHE SER VAL ASP GLY CYS TYR GLY ALA SEQRES 24 C 347 LEU VAL LYS ILE ASP THR PRO ASP TRP TYR HIS GLN VAL SEQRES 25 C 347 LYS GLU LYS GLU ASP TYR ASP VAL ASP GLU VAL ILE ALA SEQRES 26 C 347 LEU PRO PRO GLN ILE THR ILE ARG GLU GLU PRO PRO LYS SEQRES 27 C 347 THR ASN GLU SER PHE LEU LEU SER LEU FORMUL 4 HOH *167(H2 O) HELIX 1 AA1 ASP A 6 ARG A 20 1 15 HELIX 2 AA2 GLY A 29 GLU A 33 5 5 HELIX 3 AA3 PRO A 65 HIS A 67 5 3 HELIX 4 AA4 GLY A 68 ARG A 88 1 21 HELIX 5 AA5 THR A 100 LEU A 104 5 5 HELIX 6 AA6 SER A 105 PHE A 118 1 14 HELIX 7 AA7 TYR A 129 LEU A 152 1 24 HELIX 8 AA8 SER A 157 ASP A 170 1 14 HELIX 9 AA9 THR A 179 LEU A 193 1 15 HELIX 10 AB1 MET A 194 CYS A 196 5 3 HELIX 11 AB2 SER A 198 ILE A 204 1 7 HELIX 12 AB3 GLY A 212 THR A 240 1 29 HELIX 13 AB4 GLU A 251 LEU A 255 5 5 HELIX 14 AB5 GLU A 258 GLY A 270 1 13 HELIX 15 AB6 ASP A 280 SER A 290 1 11 HELIX 16 AB7 SER A 290 LYS A 300 1 11 HELIX 17 AB8 ASP B 6 ARG B 20 1 15 HELIX 18 AB9 GLY B 29 GLU B 33 5 5 HELIX 19 AC1 GLY B 68 LYS B 87 1 20 HELIX 20 AC2 THR B 100 LEU B 104 5 5 HELIX 21 AC3 SER B 105 PHE B 118 1 14 HELIX 22 AC4 TYR B 129 LEU B 152 1 24 HELIX 23 AC5 SER B 157 ASP B 170 1 14 HELIX 24 AC6 THR B 179 LEU B 193 1 15 HELIX 25 AC7 MET B 194 CYS B 196 5 3 HELIX 26 AC8 SER B 198 ILE B 204 1 7 HELIX 27 AC9 GLY B 212 THR B 240 1 29 HELIX 28 AD1 GLU B 251 GLY B 256 5 6 HELIX 29 AD2 GLU B 258 GLY B 270 1 13 HELIX 30 AD3 ASP B 280 SER B 290 1 11 HELIX 31 AD4 SER B 290 VAL B 299 1 10 HELIX 32 AD5 ASP C 6 ARG C 20 1 15 HELIX 33 AD6 GLY C 29 GLU C 33 5 5 HELIX 34 AD7 GLY C 68 ARG C 88 1 21 HELIX 35 AD8 THR C 100 LEU C 104 5 5 HELIX 36 AD9 SER C 105 PHE C 119 1 15 HELIX 37 AE1 TYR C 129 LEU C 152 1 24 HELIX 38 AE2 SER C 157 ASP C 170 1 14 HELIX 39 AE3 THR C 179 LEU C 193 1 15 HELIX 40 AE4 MET C 194 CYS C 196 5 3 HELIX 41 AE5 SER C 198 ILE C 204 1 7 HELIX 42 AE6 GLY C 212 THR C 240 1 29 HELIX 43 AE7 SER C 250 GLY C 256 5 7 HELIX 44 AE8 GLU C 258 VAL C 269 1 12 HELIX 45 AE9 ASP C 280 PHE C 289 1 10 HELIX 46 AF1 SER C 290 LYS C 300 1 11 HELIX 47 AF2 PRO C 304 GLN C 309 1 6 SHEET 1 AA1 2 PHE A 54 THR A 56 0 SHEET 2 AA1 2 ARG A 61 HIS A 63 -1 O LEU A 62 N ILE A 55 SHEET 1 AA2 2 ILE A 247 SER A 248 0 SHEET 2 AA2 2 GLU A 273 VAL A 274 -1 O VAL A 274 N ILE A 247 SHEET 1 AA3 2 PHE B 54 ILE B 57 0 SHEET 2 AA3 2 GLN B 60 HIS B 63 -1 O LEU B 62 N ILE B 55 SHEET 1 AA4 2 PHE C 54 ILE C 57 0 SHEET 2 AA4 2 GLN C 60 HIS C 63 -1 O LEU C 62 N ILE C 55 SHEET 1 AA5 2 ILE C 247 SER C 248 0 SHEET 2 AA5 2 GLU C 273 VAL C 274 -1 O VAL C 274 N ILE C 247 CRYST1 87.259 87.259 612.618 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011460 0.006617 0.000000 0.00000 SCALE2 0.000000 0.013233 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001632 0.00000