HEADER HYDROLASE 11-JUN-19 6RYO TITLE BACTERIAL MEMBRANE ENZYME STRUCTURE BY THE IN MESO METHOD AT 1.9 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN SIGNAL PEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROLIPOPROTEIN SIGNAL PEPTIDASE,SIGNAL PEPTIDASE II,SPASE COMPND 5 II; COMPND 6 EC: 3.4.23.36; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLOBOMYCIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: LSPA, LSP, SAR1172; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630 KEYWDS IN MESO, LIPID CUBIC PHASES, LIPOPROTEIN SIGNAL PEPTIDASE, KEYWDS 2 GLOBOMYCIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.HUANG,S.OLATUNJI,J.BAILEY,X.YU,V.OLIERIC,M.WANG,M.CAFFREY REVDAT 4 24-JAN-24 6RYO 1 REMARK REVDAT 3 15-NOV-23 6RYO 1 REMARK LINK ATOM REVDAT 2 22-JAN-20 6RYO 1 JRNL REVDAT 1 15-JAN-20 6RYO 0 JRNL AUTH S.OLATUNJI,X.YU,J.BAILEY,C.Y.HUANG,M.ZAPOTOCZNA,K.BOWEN, JRNL AUTH 2 M.REMSKAR,R.MULLER,E.M.SCANLAN,J.A.GEOGHEGAN,V.OLIERIC, JRNL AUTH 3 M.CAFFREY JRNL TITL STRUCTURES OF LIPOPROTEIN SIGNAL PEPTIDASE II FROM JRNL TITL 2 STAPHYLOCOCCUS AUREUS COMPLEXED WITH ANTIBIOTICS GLOBOMYCIN JRNL TITL 3 AND MYXOVIRESCIN. JRNL REF NAT COMMUN V. 11 140 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 31919415 JRNL DOI 10.1038/S41467-019-13724-Y REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 41.4 REMARK 3 NUMBER OF REFLECTIONS : 7046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.252 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.680 REMARK 3 FREE R VALUE TEST SET COUNT : 400 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.2693 - 2.7752 0.92 5045 323 0.2422 0.2725 REMARK 3 2 2.7752 - 2.2027 0.25 1312 67 0.3141 0.3161 REMARK 3 3 2.2027 - 1.9243 0.05 289 10 0.3110 0.4085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 1527 REMARK 3 ANGLE : 0.498 1983 REMARK 3 CHIRALITY : 0.044 223 REMARK 3 PLANARITY : 0.002 222 REMARK 3 DIHEDRAL : 13.721 857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 2.9893 61.6516 138.7238 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.0167 REMARK 3 T33: -0.0074 T12: 0.0163 REMARK 3 T13: 0.0465 T23: -0.0707 REMARK 3 L TENSOR REMARK 3 L11: 0.2101 L22: 0.4465 REMARK 3 L33: 0.6102 L12: 0.0487 REMARK 3 L13: -0.2252 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.0819 S13: 0.0944 REMARK 3 S21: -0.0414 S22: 0.0046 S23: 0.1964 REMARK 3 S31: -0.1716 S32: -0.1795 S33: 0.5519 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6RYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7046 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 45.257 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 62.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5DIR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 47.1 %(W/V) POLYETHYLENE GLYCOL 1,000, REMARK 280 150 MM TRIS/HCL PH 8.0, 80 MM POTASSIUM BROMIDE, LIPIDIC CUBIC REMARK 280 PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.58800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.29400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.29400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.58800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 ASP A -15 REMARK 465 TYR A -14 REMARK 465 ASP A -13 REMARK 465 ILE A -12 REMARK 465 PRO A -11 REMARK 465 THR A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 SER A 155 REMARK 465 ASN A 156 REMARK 465 LYS A 157 REMARK 465 LYS A 158 REMARK 465 GLU A 159 REMARK 465 LYS A 160 REMARK 465 GLU A 161 REMARK 465 VAL A 162 REMARK 465 LYS A 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N MLE B 1 O 5BV B 5 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALO B 4 O - C - N ANGL. DEV. = -22.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 40 -60.23 -109.58 REMARK 500 TYR A 88 15.06 57.34 REMARK 500 PHE A 125 34.73 -98.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 202 REMARK 610 OLC A 203 REMARK 610 OLC A 204 REMARK 610 OLC A 205 REMARK 610 7PE A 209 REMARK 610 7PE A 210 REMARK 610 7PE A 211 REMARK 610 7PE A 212 REMARK 610 7PE A 213 REMARK 610 7PE A 214 REMARK 610 7PE A 215 REMARK 610 7PE A 216 REMARK 610 7PE A 218 REMARK 610 OLC B 101 REMARK 610 7PE B 102 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 217 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 0 ND1 REMARK 620 2 HIS A 2 NE2 95.6 REMARK 620 3 HIS A 43 NE2 59.4 83.4 REMARK 620 4 GLU A 115 OE1 68.2 47.6 36.0 REMARK 620 5 GLU A 115 OE2 70.0 46.7 36.7 1.9 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 213 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE A 218 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7PE B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Ligand residues ALO B 4 through REMARK 800 SER B 3 bound to SER B 3 DBREF 6RYO A 1 163 UNP Q6GHN9 LSPA_STAAR 1 163 DBREF 6RYO B 1 5 PDB 6RYO 6RYO 1 5 SEQADV 6RYO MET A -23 UNP Q6GHN9 INITIATING METHIONINE SEQADV 6RYO GLY A -22 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO HIS A -21 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO HIS A -20 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO HIS A -19 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO HIS A -18 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO HIS A -17 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO HIS A -16 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO ASP A -15 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO TYR A -14 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO ASP A -13 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO ILE A -12 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO PRO A -11 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO THR A -10 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO THR A -9 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO GLU A -8 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO ASN A -7 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO LEU A -6 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO TYR A -5 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO PHE A -4 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO GLN A -3 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO GLY A -2 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO ALA A -1 UNP Q6GHN9 EXPRESSION TAG SEQADV 6RYO HIS A 0 UNP Q6GHN9 EXPRESSION TAG SEQRES 1 A 187 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 A 187 THR THR GLU ASN LEU TYR PHE GLN GLY ALA HIS MET HIS SEQRES 3 A 187 LYS LYS TYR PHE ILE GLY THR SER ILE LEU ILE ALA VAL SEQRES 4 A 187 PHE VAL VAL ILE PHE ASP GLN VAL THR LYS TYR ILE ILE SEQRES 5 A 187 ALA THR THR MET LYS ILE GLY ASP SER PHE GLU VAL ILE SEQRES 6 A 187 PRO HIS PHE LEU ASN ILE THR SER HIS ARG ASN ASN GLY SEQRES 7 A 187 ALA ALA TRP GLY ILE LEU SER GLY LYS MET THR PHE PHE SEQRES 8 A 187 PHE ILE ILE THR ILE ILE ILE LEU ILE ALA LEU VAL TYR SEQRES 9 A 187 PHE PHE ILE LYS ASP ALA GLN TYR ASN LEU PHE MET GLN SEQRES 10 A 187 VAL ALA ILE SER LEU LEU PHE ALA GLY ALA LEU GLY ASN SEQRES 11 A 187 PHE ILE ASP ARG VAL LEU THR GLY GLU VAL VAL ASP PHE SEQRES 12 A 187 ILE ASP THR ASN ILE PHE GLY TYR ASP PHE PRO ILE PHE SEQRES 13 A 187 ASN ILE ALA ASP SER SER LEU THR ILE GLY VAL ILE LEU SEQRES 14 A 187 ILE ILE ILE ALA LEU LEU LYS ASP THR SER ASN LYS LYS SEQRES 15 A 187 GLU LYS GLU VAL LYS SEQRES 1 B 5 MLE IIL SER ALO 5BV HET MLE B 1 9 HET IIL B 2 8 HET ALO B 4 7 HET 5BV B 5 16 HET OLC A 201 25 HET OLC A 202 18 HET OLC A 203 19 HET OLC A 204 21 HET OLC A 205 20 HET GOL A 206 6 HET GOL A 207 6 HET GOL A 208 6 HET 7PE A 209 7 HET 7PE A 210 7 HET 7PE A 211 7 HET 7PE A 212 7 HET 7PE A 213 13 HET 7PE A 214 13 HET 7PE A 215 9 HET 7PE A 216 12 HET ZN A 217 1 HET 7PE A 218 5 HET GOL A 219 6 HET GOL A 220 6 HET OLC B 101 21 HET 7PE B 102 7 HETNAM MLE N-METHYLLEUCINE HETNAM IIL ISO-ISOLEUCINE HETNAM ALO ALLO-THREONINE HETNAM 5BV (2R,3R)-3-(GLYCYLOXY)-2-METHYLNONANOIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM GOL GLYCEROL HETNAM 7PE 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY) HETNAM 2 7PE ETHOXY)ETHANOL HETNAM ZN ZINC ION HETSYN IIL ALLO-ISOLEUCINE HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 7PE POLYETHYLENE GLYCOL FRAGMENT FORMUL 2 MLE C7 H15 N O2 FORMUL 2 IIL C6 H13 N O2 FORMUL 2 ALO C4 H9 N O3 FORMUL 2 5BV C12 H23 N O4 FORMUL 3 OLC 6(C21 H40 O4) FORMUL 8 GOL 5(C3 H8 O3) FORMUL 11 7PE 10(C14 H30 O7) FORMUL 19 ZN ZN 2+ FORMUL 25 HOH *28(H2 O) HELIX 1 AA1 PHE A 6 MET A 32 1 27 HELIX 2 AA2 GLY A 54 GLY A 58 5 5 HELIX 3 AA3 GLY A 62 ASP A 85 1 24 HELIX 4 AA4 ASN A 89 GLY A 114 1 26 HELIX 5 AA5 ASN A 133 LEU A 151 1 19 SHEET 1 AA1 3 SER A 37 ILE A 41 0 SHEET 2 AA1 3 LEU A 45 ASN A 52 -1 O ILE A 47 N PHE A 38 SHEET 3 AA1 3 VAL A 116 THR A 122 -1 O ASP A 121 N ASN A 46 LINK C MLE B 1 N IIL B 2 1555 1555 1.33 LINK N MLE B 1 C 5BV B 5 1555 1555 1.43 LINK C IIL B 2 N SER B 3 1555 1555 1.33 LINK C SER B 3 N ALO B 4 1555 1555 1.33 LINK C ALO B 4 N 5BV B 5 1555 1555 1.43 LINK ND1 HIS A 0 ZN ZN A 217 1555 1555 2.63 LINK NE2 HIS A 2 ZN ZN A 217 1555 1555 2.07 LINK NE2 HIS A 43 ZN ZN A 217 1555 4467 2.09 LINK OE1 GLU A 115 ZN ZN A 217 1555 3575 2.32 LINK OE2 GLU A 115 ZN ZN A 217 1555 3575 1.95 SITE 1 AC1 9 VAL A 17 VAL A 94 LEU A 98 ILE A 134 SITE 2 AC1 9 SER A 137 OLC A 202 OLC A 204 OLC A 205 SITE 3 AC1 9 OLC B 101 SITE 1 AC2 5 LEU A 90 PHE A 91 VAL A 94 OLC A 201 SITE 2 AC2 5 7PE A 215 SITE 1 AC3 6 ALA A 14 ILE A 19 PHE A 82 SER A 97 SITE 2 AC3 6 PHE A 100 7PE A 214 SITE 1 AC4 8 THR A 9 LEU A 12 PHE A 16 PHE A 20 SITE 2 AC4 8 LEU A 60 SER A 61 PHE A 66 OLC A 201 SITE 1 AC5 5 ILE A 28 PHE A 38 LEU A 45 OLC A 201 SITE 2 AC5 5 OLC B 101 SITE 1 AC6 4 ILE A 83 LYS A 84 TYR A 127 ASP A 128 SITE 1 AC7 3 PHE A 129 PRO A 130 7PE B 102 SITE 1 AC8 4 SER A 37 LYS A 152 7PE A 210 7PE A 216 SITE 1 AC9 4 ILE A 74 LEU A 78 PHE A 81 7PE A 214 SITE 1 AD1 4 PHE A 44 ASN A 89 ALA A 149 GOL A 208 SITE 1 AD2 2 THR A 140 MLE B 1 SITE 1 AD3 2 ASP A 121 TYR A 127 SITE 1 AD4 7 LYS A 25 ALA A 29 ARG A 51 THR A 113 SITE 2 AD4 7 GLU A 115 VAL A 117 HOH A 301 SITE 1 AD5 6 ILE A 19 GLN A 22 VAL A 23 TYR A 26 SITE 2 AD5 6 OLC A 203 7PE A 209 SITE 1 AD6 7 HIS A 2 ILE A 34 PHE A 44 TYR A 88 SITE 2 AD6 7 LEU A 90 PHE A 91 OLC A 202 SITE 1 AD7 7 VAL A 111 LEU A 112 LEU A 150 LEU A 151 SITE 2 AD7 7 LYS A 152 THR A 154 GOL A 208 SITE 1 AD8 4 HIS A 0 HIS A 2 HIS A 43 GLU A 115 SITE 1 AD9 3 THR A 65 PHE A 68 GOL A 220 SITE 1 AE1 6 GLY A 62 LYS A 63 MET A 64 THR A 65 SITE 2 AE1 6 GOL A 220 HOH A 303 SITE 1 AE2 4 THR A 65 7PE A 218 GOL A 219 HOH A 303 SITE 1 AE3 13 LEU A 45 ASN A 52 ASP A 118 PHE A 129 SITE 2 AE3 13 PRO A 130 ILE A 131 PHE A 132 THR A 140 SITE 3 AE3 13 OLC A 201 OLC A 205 IIL B 2 SER B 3 SITE 4 AE3 13 ALO B 4 SITE 1 AE4 2 TRP A 57 GOL A 207 SITE 1 AE5 19 GLY A 8 LEU A 12 ASN A 52 GLY A 54 SITE 2 AE5 19 TRP A 57 LEU A 60 PHE A 67 THR A 71 SITE 3 AE5 19 ILE A 74 ASN A 106 ARG A 110 VAL A 116 SITE 4 AE5 19 ASP A 118 ASN A 133 ASP A 136 LEU A 139 SITE 5 AE5 19 7PE A 211 HOH A 306 OLC B 101 CRYST1 52.258 52.258 135.882 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019136 0.011048 0.000000 0.00000 SCALE2 0.000000 0.022096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007359 0.00000