HEADER TRANSFERASE 18-JUN-19 6S14
TITLE CRYSTAL STRUCTURE OF DYRK1A WITH SMALL MOLECULE INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE
COMPND 3 1A;
COMPND 4 CHAIN: A;
COMPND 5 SYNONYM: DUAL SPECIFICITY YAK1-RELATED KINASE,HP86,PROTEIN KINASE
COMPND 6 MINIBRAIN HOMOLOG,HMNB;
COMPND 7 EC: 2.7.12.1;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DYRK1A, DYRK, MNB, MNBH;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS KINASE, CATALYTIC DOMAIN, PHOSPHORYLATED, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR F.J.SORRELL,S.H.HENDERSON,C.REDONDO,N.A.BURGESS-BROWN,F.VON DELFT,
AUTHOR 2 C.H.ARROWSMITH,C.BOUNTRA,A.M.EDWARDS,J.M.ELKINS
REVDAT 4 20-NOV-24 6S14 1 REMARK
REVDAT 3 24-JAN-24 6S14 1 REMARK
REVDAT 2 21-AUG-19 6S14 1 REMARK
REVDAT 1 26-JUN-19 6S14 0
JRNL AUTH F.J.SORRELL,S.H.HENDERSON,J.M.ELKINS,S.WARD
JRNL TITL KINASE SCAFFOLD REPURPOSING IN THE PUBLIC DOMAIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.05 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.20
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 75.8
REMARK 3 NUMBER OF REFLECTIONS : 149678
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.151
REMARK 3 R VALUE (WORKING SET) : 0.151
REMARK 3 FREE R VALUE : 0.163
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070
REMARK 3 FREE R VALUE TEST SET COUNT : 7591
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 24.2090 - 3.2601 0.99 6360 322 0.1529 0.1799
REMARK 3 2 3.2601 - 2.5886 1.00 6254 345 0.1503 0.1548
REMARK 3 3 2.5886 - 2.2617 1.00 6264 333 0.1377 0.1437
REMARK 3 4 2.2617 - 2.0550 0.99 6252 312 0.1314 0.1388
REMARK 3 5 2.0550 - 1.9078 0.99 6247 322 0.1387 0.1448
REMARK 3 6 1.9078 - 1.7953 0.99 6220 343 0.1409 0.1413
REMARK 3 7 1.7953 - 1.7054 0.99 6214 320 0.1406 0.1521
REMARK 3 8 1.7054 - 1.6312 0.99 6186 312 0.1360 0.1547
REMARK 3 9 1.6312 - 1.5684 0.99 6219 315 0.1359 0.1431
REMARK 3 10 1.5684 - 1.5143 0.99 6178 307 0.1420 0.1537
REMARK 3 11 1.5143 - 1.4670 0.99 6094 376 0.1503 0.1674
REMARK 3 12 1.4670 - 1.4251 0.98 6157 309 0.1510 0.1500
REMARK 3 13 1.4251 - 1.3875 0.98 6099 341 0.1557 0.1657
REMARK 3 14 1.3875 - 1.3537 0.98 6136 317 0.1581 0.1631
REMARK 3 15 1.3537 - 1.3229 0.95 5901 319 0.1602 0.1806
REMARK 3 16 1.3229 - 1.2948 0.93 5803 319 0.1606 0.1864
REMARK 3 17 1.2948 - 1.2689 0.92 5698 314 0.1649 0.1824
REMARK 3 18 1.2689 - 1.2449 0.89 5602 272 0.1769 0.1851
REMARK 3 19 1.2449 - 1.2227 0.87 5470 286 0.1768 0.1915
REMARK 3 20 1.2227 - 1.2020 0.82 5127 265 0.1900 0.1891
REMARK 3 21 1.2020 - 1.1826 0.71 4339 256 0.1970 0.2171
REMARK 3 22 1.1826 - 1.1644 0.60 3722 214 0.2064 0.2378
REMARK 3 23 1.1644 - 1.1473 0.53 3284 185 0.2251 0.2254
REMARK 3 24 1.1473 - 1.1311 0.45 2787 163 0.2297 0.2279
REMARK 3 25 1.1311 - 1.1158 0.37 2302 129 0.2373 0.2567
REMARK 3 26 1.1158 - 1.1013 0.30 1876 87 0.2634 0.2149
REMARK 3 27 1.1013 - 1.0876 0.23 1425 86 0.2627 0.2197
REMARK 3 28 1.0876 - 1.0745 0.17 1034 74 0.2837 0.2991
REMARK 3 29 1.0745 - 1.0620 0.10 625 37 0.2810 0.3763
REMARK 3 30 1.0620 - 1.0500 0.03 212 11 0.3079 0.2799
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.420
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.45
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.013 2893
REMARK 3 ANGLE : 1.222 3922
REMARK 3 CHIRALITY : 0.091 413
REMARK 3 PLANARITY : 0.009 519
REMARK 3 DIHEDRAL : 18.824 1082
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 238 )
REMARK 3 ORIGIN FOR THE GROUP (A): 24.5892 -54.4270 43.5750
REMARK 3 T TENSOR
REMARK 3 T11: 0.0763 T22: 0.0808
REMARK 3 T33: 0.0673 T12: -0.0011
REMARK 3 T13: 0.0010 T23: -0.0061
REMARK 3 L TENSOR
REMARK 3 L11: 0.8718 L22: 1.0449
REMARK 3 L33: 1.2877 L12: 0.0818
REMARK 3 L13: -0.0530 L23: -0.2709
REMARK 3 S TENSOR
REMARK 3 S11: -0.0091 S12: -0.0525 S13: -0.0002
REMARK 3 S21: 0.0517 S22: -0.0004 S23: -0.0420
REMARK 3 S31: -0.0022 S32: -0.0074 S33: -0.0025
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 320 )
REMARK 3 ORIGIN FOR THE GROUP (A): 12.8598 -47.8609 29.2156
REMARK 3 T TENSOR
REMARK 3 T11: 0.0735 T22: 0.0623
REMARK 3 T33: 0.0735 T12: 0.0042
REMARK 3 T13: 0.0044 T23: 0.0000
REMARK 3 L TENSOR
REMARK 3 L11: 0.7852 L22: 0.9883
REMARK 3 L33: 0.7635 L12: 0.0690
REMARK 3 L13: 0.3681 L23: -0.1078
REMARK 3 S TENSOR
REMARK 3 S11: 0.0057 S12: -0.0307 S13: -0.0329
REMARK 3 S21: -0.0049 S22: 0.0180 S23: -0.0152
REMARK 3 S31: 0.0442 S32: -0.0194 S33: -0.0166
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 481 )
REMARK 3 ORIGIN FOR THE GROUP (A): 12.3821 -45.0383 11.3458
REMARK 3 T TENSOR
REMARK 3 T11: 0.0995 T22: 0.0960
REMARK 3 T33: 0.0696 T12: 0.0088
REMARK 3 T13: -0.0068 T23: 0.0038
REMARK 3 L TENSOR
REMARK 3 L11: 1.0633 L22: 0.7768
REMARK 3 L33: 0.9251 L12: -0.2173
REMARK 3 L13: 0.2610 L23: 0.0741
REMARK 3 S TENSOR
REMARK 3 S11: 0.0464 S12: 0.1696 S13: 0.0005
REMARK 3 S21: -0.1345 S22: -0.0159 S23: 0.0200
REMARK 3 S31: -0.0188 S32: 0.0235 S33: -0.0145
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6S14 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-19.
REMARK 100 THE DEPOSITION ID IS D_1292102980.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 13-MAY-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I04-1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 149683
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050
REMARK 200 RESOLUTION RANGE LOW (A) : 30.390
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 75.9
REMARK 200 DATA REDUNDANCY : 2.900
REMARK 200 R MERGE (I) : 0.03500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08
REMARK 200 COMPLETENESS FOR SHELL (%) : 7.6
REMARK 200 DATA REDUNDANCY IN SHELL : 1.10
REMARK 200 R MERGE FOR SHELL (I) : 0.60600
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4MQ1
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.80
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE -- 0.1M CITRATE PH
REMARK 280 5.7 -- 0.2M SODIUM/POTASSIUM TARTRATE, VAPOR DIFFUSION, SITTING
REMARK 280 DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.73500
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.15000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.73500
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.15000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 970 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 16510 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 639 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 125
REMARK 465 MET A 126
REMARK 465 SER A 127
REMARK 465 SER A 128
REMARK 465 HIS A 129
REMARK 465 LYS A 130
REMARK 465 LYS A 131
REMARK 465 GLU A 132
REMARK 465 ARG A 133
REMARK 465 LYS A 134
REMARK 465 THR A 408
REMARK 465 LYS A 409
REMARK 465 ASP A 410
REMARK 465 GLY A 411
REMARK 465 LYS A 412
REMARK 465 ARG A 413
REMARK 465 GLU A 414
REMARK 465 THR A 482
REMARK 465 ALA A 483
REMARK 465 ASP A 484
REMARK 465 GLU A 485
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 VAL A 135 CG1 CG2
REMARK 470 LYS A 150 CD CE
REMARK 470 LYS A 154 CE NZ
REMARK 470 LYS A 218 CD CE NZ
REMARK 470 LYS A 299 CG CD CE NZ
REMARK 470 ARG A 300 NE CZ NH1 NH2
REMARK 470 GLN A 316 CG CD OE1 NE2
REMARK 470 ARG A 317 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 392 CZ NH1 NH2
REMARK 470 LEU A 398 CG CD1 CD2
REMARK 470 LYS A 406 NZ
REMARK 470 LYS A 407 CG CD CE NZ
REMARK 470 LYS A 480 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HE21 GLN A 475 O HOH A 610 1.60
REMARK 500 O HOH A 952 O HOH A 974 1.81
REMARK 500 OH TYR A 219 O HOH A 601 1.89
REMARK 500 O HOH A 991 O HOH A 1006 1.90
REMARK 500 O HOH A 981 O HOH A 1084 1.96
REMARK 500 O HOH A 1011 O HOH A 1072 1.99
REMARK 500 O HOH A 974 O HOH A 1001 2.02
REMARK 500 O HOH A 699 O HOH A 820 2.02
REMARK 500 O HOH A 1019 O HOH A 1067 2.04
REMARK 500 OE2 GLU A 280 O HOH A 602 2.05
REMARK 500 O HOH A 602 O HOH A 658 2.05
REMARK 500 O HOH A 908 O HOH A 1051 2.05
REMARK 500 OD1 ASP A 448 O HOH A 603 2.06
REMARK 500 O HOH A 903 O HOH A 921 2.07
REMARK 500 O HOH A 1046 O HOH A 1077 2.09
REMARK 500 O HOH A 654 O HOH A 955 2.12
REMARK 500 O HOH A 1067 O HOH A 1109 2.13
REMARK 500 O HOH A 880 O HOH A 984 2.13
REMARK 500 O HOH A 830 O HOH A 886 2.13
REMARK 500 O GLN A 316 O HOH A 604 2.14
REMARK 500 O HOH A 948 O HOH A 1062 2.14
REMARK 500 O HOH A 704 O HOH A 801 2.18
REMARK 500 O HOH A 1025 O HOH A 1067 2.18
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 736 O HOH A 938 4556 1.69
REMARK 500 O HOH A 929 O HOH A 1073 4556 1.93
REMARK 500 NH1 ARG A 250 O HOH A 601 4546 1.94
REMARK 500 O HOH A 823 O HOH A 831 4546 2.08
REMARK 500 O HOH A 907 O HOH A 999 4546 2.08
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 MET A 229 CG - SD - CE ANGL. DEV. = -10.9 DEGREES
REMARK 500 MET A 240 CG - SD - CE ANGL. DEV. = -12.6 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 158 -52.33 -148.16
REMARK 500 ASP A 162 -62.86 -95.29
REMARK 500 ASP A 214 62.60 -150.50
REMARK 500 SER A 242 -143.40 -113.58
REMARK 500 LEU A 281 -68.14 -95.82
REMARK 500 LEU A 281 -69.35 -103.87
REMARK 500 ASP A 287 45.02 -149.42
REMARK 500 ASP A 307 84.58 73.07
REMARK 500 GLN A 323 137.75 76.07
REMARK 500 GLN A 323 141.09 76.07
REMARK 500 HIS A 444 48.53 -146.32
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1142 DISTANCE = 6.09 ANGSTROMS
REMARK 525 HOH A1143 DISTANCE = 6.78 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue KQW A 507
DBREF 6S14 A 127 485 UNP Q13627 DYR1A_HUMAN 127 485
SEQADV 6S14 SER A 125 UNP Q13627 EXPRESSION TAG
SEQADV 6S14 MET A 126 UNP Q13627 EXPRESSION TAG
SEQRES 1 A 361 SER MET SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN
SEQRES 2 A 361 ASP GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS
SEQRES 3 A 361 ASN GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER
SEQRES 4 A 361 LEU ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA
SEQRES 5 A 361 TYR ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE
SEQRES 6 A 361 ILE LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE
SEQRES 7 A 361 GLU VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR
SEQRES 8 A 361 GLU MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE
SEQRES 9 A 361 MET PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU
SEQRES 10 A 361 SER TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE
SEQRES 11 A 361 ARG GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN
SEQRES 12 A 361 GLN MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU
SEQRES 13 A 361 LEU SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE
SEQRES 14 A 361 LEU LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL
SEQRES 15 A 361 ASP PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR
SEQRES 16 A 361 GLN PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL
SEQRES 17 A 361 LEU LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP
SEQRES 18 A 361 SER LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU
SEQRES 19 A 361 PRO LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN
SEQRES 20 A 361 LYS ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE
SEQRES 21 A 361 LEU ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS
SEQRES 22 A 361 LEU PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP
SEQRES 23 A 361 GLY LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU
SEQRES 24 A 361 HIS ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY
SEQRES 25 A 361 ARG ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR
SEQRES 26 A 361 LEU LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR
SEQRES 27 A 361 ASP PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN
SEQRES 28 A 361 HIS SER PHE PHE LYS LYS THR ALA ASP GLU
MODRES 6S14 PTR A 321 TYR MODIFIED RESIDUE
HET PTR A 321 23
HET SO4 A 501 5
HET SO4 A 502 5
HET SO4 A 503 5
HET SO4 A 504 5
HET SO4 A 505 5
HET SO4 A 506 5
HET KQW A 507 34
HETNAM PTR O-PHOSPHOTYROSINE
HETNAM SO4 SULFATE ION
HETNAM KQW ~{N}-CYCLOPROPYL-~{N}-METHYL-4-PYRAZOLO[1,5-
HETNAM 2 KQW B]PYRIDAZIN-3-YL-PYRIMIDIN-2-AMINE
HETSYN PTR PHOSPHONOTYROSINE
FORMUL 1 PTR C9 H12 N O6 P
FORMUL 2 SO4 6(O4 S 2-)
FORMUL 8 KQW C14 H14 N6
FORMUL 9 HOH *543(H2 O)
HELIX 1 AA1 TYR A 136 TYR A 140 5 5
HELIX 2 AA2 LYS A 193 HIS A 213 1 21
HELIX 3 AA3 ASN A 244 THR A 252 1 9
HELIX 4 AA4 SER A 258 ALA A 277 1 20
HELIX 5 AA5 LYS A 289 GLU A 291 5 3
HELIX 6 AA6 SER A 324 ARG A 328 5 5
HELIX 7 AA7 SER A 329 LEU A 334 1 6
HELIX 8 AA8 LEU A 340 GLY A 357 1 18
HELIX 9 AA9 ASN A 365 GLY A 378 1 14
HELIX 10 AB1 PRO A 381 ASP A 386 1 6
HELIX 11 AB2 LYS A 390 PHE A 394 1 5
HELIX 12 AB3 LYS A 422 LEU A 427 1 6
HELIX 13 AB4 GLY A 433 ARG A 437 5 5
HELIX 14 AB5 THR A 445 LEU A 460 1 16
HELIX 15 AB6 GLN A 469 HIS A 476 1 8
SHEET 1 AA1 6 LYS A 154 TRP A 155 0
SHEET 2 AA1 6 TYR A 159 GLY A 168 -1 O TYR A 159 N TRP A 155
SHEET 3 AA1 6 GLY A 171 ASP A 178 -1 O LYS A 175 N SER A 163
SHEET 4 AA1 6 GLU A 183 ILE A 190 -1 O GLU A 183 N ASP A 178
SHEET 5 AA1 6 HIS A 233 PHE A 238 -1 O PHE A 238 N ALA A 186
SHEET 6 AA1 6 LEU A 224 PHE A 230 -1 N PHE A 228 O CYS A 235
SHEET 1 AA2 2 ILE A 283 ILE A 284 0
SHEET 2 AA2 2 CYS A 312 GLN A 313 -1 O CYS A 312 N ILE A 284
SHEET 1 AA3 2 ILE A 293 LEU A 295 0
SHEET 2 AA3 2 ILE A 303 ILE A 305 -1 O LYS A 304 N LEU A 294
SHEET 1 AA4 2 PHE A 395 LYS A 397 0
SHEET 2 AA4 2 TRP A 403 LEU A 405 -1 O ASN A 404 N GLU A 396
LINK C GLN A 320 N PTR A 321 1555 1555 1.33
LINK C PTR A 321 N ILE A 322 1555 1555 1.33
SITE 1 AC1 6 SER A 169 LYS A 193 LYS A 194 HOH A 647
SITE 2 AC1 6 HOH A 737 HOH A 818
SITE 1 AC2 4 LYS A 264 ARG A 300 SER A 301 HOH A 868
SITE 1 AC3 4 ARG A 325 ARG A 328 HOH A 652 HOH A 861
SITE 1 AC4 8 ASN A 144 GLY A 168 SER A 169 LYS A 191
SITE 2 AC4 8 LYS A 193 LYS A 481 HOH A 612 HOH A 740
SITE 1 AC5 5 ASN A 365 GLU A 366 VAL A 367 LYS A 393
SITE 2 AC5 5 HOH A 659
SITE 1 AC6 4 ARG A 226 HOH A 622 HOH A 692 HOH A 883
SITE 1 AC7 9 ILE A 165 PHE A 170 VAL A 173 ALA A 186
SITE 2 AC7 9 LYS A 188 PHE A 238 GLU A 239 LEU A 241
SITE 3 AC7 9 HOH A 718
CRYST1 101.470 70.300 68.530 90.00 118.04 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009855 0.000000 0.005249 0.00000
SCALE2 0.000000 0.014225 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016533 0.00000