HEADER TRANSFERASE 18-JUN-19 6S1H
TITLE CRYSTAL STRUCTURE OF DYRK1A WITH SMALL MOLECULE INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE
COMPND 3 1A;
COMPND 4 CHAIN: A;
COMPND 5 SYNONYM: DUAL SPECIFICITY YAK1-RELATED KINASE,HP86,PROTEIN KINASE
COMPND 6 MINIBRAIN HOMOLOG,HMNB;
COMPND 7 EC: 2.7.12.1;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: DYRK1A, DYRK, MNB, MNBH;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS KINASE, CATALYTIC DOMAIN, PHOSPHORYLATED, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR F.J.SORRELL,S.H.HENDERSON,C.REDONDO,N.A.BURGESS-BROWN,F.VON DELFT,
AUTHOR 2 C.H.ARROWSMITH,C.BOUNTRA,A.M.EDWARDS,J.M.ELKINS
REVDAT 4 13-NOV-24 6S1H 1 REMARK
REVDAT 3 24-JAN-24 6S1H 1 REMARK
REVDAT 2 21-AUG-19 6S1H 1 REMARK
REVDAT 1 26-JUN-19 6S1H 0
JRNL AUTH F.J.SORRELL,S.H.HENDERSON,J.M.ELKINS,S.WARD
JRNL TITL KINASE SCAFFOLD REPURPOSING IN THE PUBLIC DOMAIN
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 1.05 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.11
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9
REMARK 3 NUMBER OF REFLECTIONS : 174652
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.141
REMARK 3 R VALUE (WORKING SET) : 0.140
REMARK 3 FREE R VALUE : 0.155
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130
REMARK 3 FREE R VALUE TEST SET COUNT : 8962
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 30.1258 - 3.2613 0.99 6133 316 0.1513 0.1643
REMARK 3 2 3.2613 - 2.5890 1.00 6049 328 0.1490 0.1522
REMARK 3 3 2.5890 - 2.2619 1.00 6010 324 0.1327 0.1423
REMARK 3 4 2.2619 - 2.0551 1.00 6041 294 0.1241 0.1487
REMARK 3 5 2.0551 - 1.9079 1.00 6047 306 0.1316 0.1387
REMARK 3 6 1.9079 - 1.7954 1.00 5975 337 0.1285 0.1468
REMARK 3 7 1.7954 - 1.7055 1.00 6022 307 0.1315 0.1535
REMARK 3 8 1.7055 - 1.6312 1.00 6018 300 0.1231 0.1304
REMARK 3 9 1.6312 - 1.5685 1.00 6029 314 0.1180 0.1383
REMARK 3 10 1.5685 - 1.5143 1.00 6033 309 0.1209 0.1274
REMARK 3 11 1.5143 - 1.4670 1.00 5964 360 0.1216 0.1480
REMARK 3 12 1.4670 - 1.4251 1.00 5988 320 0.1243 0.1327
REMARK 3 13 1.4251 - 1.3875 1.00 6018 317 0.1250 0.1430
REMARK 3 14 1.3875 - 1.3537 1.00 5949 304 0.1281 0.1478
REMARK 3 15 1.3537 - 1.3229 1.00 6032 329 0.1268 0.1362
REMARK 3 16 1.3229 - 1.2948 1.00 5987 317 0.1295 0.1491
REMARK 3 17 1.2948 - 1.2689 1.00 5982 311 0.1310 0.1531
REMARK 3 18 1.2689 - 1.2449 1.00 5985 323 0.1355 0.1638
REMARK 3 19 1.2449 - 1.2227 1.00 6047 291 0.1375 0.1596
REMARK 3 20 1.2227 - 1.2020 1.00 5954 333 0.1439 0.1609
REMARK 3 21 1.2020 - 1.1826 1.00 5930 372 0.1516 0.1594
REMARK 3 22 1.1826 - 1.1644 0.99 5907 328 0.1574 0.1720
REMARK 3 23 1.1644 - 1.1472 0.98 5806 338 0.1629 0.1795
REMARK 3 24 1.1472 - 1.1311 0.92 5498 335 0.1769 0.1892
REMARK 3 25 1.1311 - 1.1158 0.83 5018 280 0.1962 0.2154
REMARK 3 26 1.1158 - 1.1013 0.75 4453 241 0.2273 0.2236
REMARK 3 27 1.1013 - 1.0875 0.66 3927 221 0.2551 0.2877
REMARK 3 28 1.0875 - 1.0744 0.57 3394 224 0.2904 0.3155
REMARK 3 29 1.0744 - 1.0619 0.50 2973 161 0.3381 0.3449
REMARK 3 30 1.0619 - 1.0500 0.42 2521 122 0.4051 0.4373
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.470
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.52
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.006 3093
REMARK 3 ANGLE : 1.031 4208
REMARK 3 CHIRALITY : 0.129 434
REMARK 3 PLANARITY : 0.007 569
REMARK 3 DIHEDRAL : 19.113 1181
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6S1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-JUN-19.
REMARK 100 THE DEPOSITION ID IS D_1292102989.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-SEP-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 174657
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050
REMARK 200 RESOLUTION RANGE LOW (A) : 30.110
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 91.9
REMARK 200 DATA REDUNDANCY : 3.000
REMARK 200 R MERGE (I) : 0.05100
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.08
REMARK 200 COMPLETENESS FOR SHELL (%) : 47.0
REMARK 200 DATA REDUNDANCY IN SHELL : 1.70
REMARK 200 R MERGE FOR SHELL (I) : 0.63400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4MQ1
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 53.08
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE -- 0.1M CITRATE
REMARK 280 PH 5.7 -- 0.2M SODIUM/POTASSIUM TARTRATE, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.81500
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.84000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.81500
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.84000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1000 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 15730 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 633 LIES ON A SPECIAL POSITION.
REMARK 375 HOH A1069 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 125
REMARK 465 MET A 126
REMARK 465 SER A 127
REMARK 465 SER A 128
REMARK 465 HIS A 129
REMARK 465 LYS A 130
REMARK 465 LYS A 131
REMARK 465 GLU A 132
REMARK 465 ARG A 133
REMARK 465 LYS A 134
REMARK 465 THR A 408
REMARK 465 LYS A 409
REMARK 465 ASP A 410
REMARK 465 GLY A 411
REMARK 465 LYS A 412
REMARK 465 ARG A 413
REMARK 465 LYS A 481
REMARK 465 THR A 482
REMARK 465 ALA A 483
REMARK 465 ASP A 484
REMARK 465 GLU A 485
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 VAL A 135 N CA CB CG1 CG2
REMARK 470 LYS A 150 CD CE NZ
REMARK 470 GLU A 216 CG CD OE1 OE2
REMARK 470 LYS A 218 NZ
REMARK 470 LYS A 299 CG CD CE NZ
REMARK 470 GLN A 316 CG CD OE1 NE2
REMARK 470 ARG A 317 CZ NH1 NH2
REMARK 470 LYS A 397 CE NZ
REMARK 470 LYS A 406 NZ
REMARK 470 LYS A 407 CG CD CE NZ
REMARK 470 GLU A 414 N CA CB CG CD OE1 OE2
REMARK 470 LYS A 480 CA C O CB CG CD CE
REMARK 470 LYS A 480 NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HG SER A 310 O HOH A 602 1.49
REMARK 500 O HOH A 888 O HOH A 974 1.80
REMARK 500 O HOH A 960 O HOH A 1013 1.83
REMARK 500 O HOH A 690 O HOH A 840 1.83
REMARK 500 O HOH A 676 O HOH A 756 1.88
REMARK 500 O HOH A 615 O HOH A 865 1.90
REMARK 500 O HOH A 1130 O HOH A 1132 1.96
REMARK 500 O HOH A 869 O HOH A 933 1.96
REMARK 500 O HOH A 672 O HOH A 836 1.98
REMARK 500 O HOH A 746 O HOH A 748 1.99
REMARK 500 O HOH A 766 O HOH A 962 1.99
REMARK 500 O HOH A 618 O HOH A 865 2.00
REMARK 500 O HOH A 942 O HOH A 950 2.00
REMARK 500 O HOH A 618 O HOH A 1058 2.02
REMARK 500 OD1 ASP A 214 O HOH A 601 2.03
REMARK 500 OG SER A 310 O HOH A 602 2.03
REMARK 500 O HOH A 815 O HOH A 1037 2.05
REMARK 500 NE2 GLN A 320 O HOH A 603 2.06
REMARK 500 OE1 GLU A 208 O HOH A 604 2.07
REMARK 500 O HOH A 657 O HOH A 714 2.10
REMARK 500 OD1 ASN A 251 O HOH A 605 2.10
REMARK 500 O HOH A 692 O HOH A 1019 2.11
REMARK 500 O HOH A 601 O HOH A 933 2.12
REMARK 500 N LYS A 480 O HOH A 606 2.12
REMARK 500 O HOH A 983 O HOH A 1117 2.12
REMARK 500 OH TYR A 243 O HOH A 607 2.14
REMARK 500 O HOH A 934 O HOH A 1066 2.14
REMARK 500 O HOH A 915 O HOH A 996 2.15
REMARK 500 O HOH A 989 O HOH A 1010 2.16
REMARK 500 O HOH A 1002 O HOH A 1038 2.16
REMARK 500 O1P PTR A 321 O HOH A 608 2.16
REMARK 500 O HOH A 677 O HOH A 951 2.17
REMARK 500 OD1 ASN A 253 O HOH A 609 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 948 O HOH A 1018 2656 1.78
REMARK 500 O HOH A 711 O HOH A 794 2555 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 LEU A 245 CB - CG - CD2 ANGL. DEV. = 15.2 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 158 -51.38 -148.55
REMARK 500 ARG A 158 -51.38 -145.06
REMARK 500 ASP A 162 -62.21 -94.41
REMARK 500 LYS A 212 -3.64 -56.13
REMARK 500 ASP A 214 59.27 -152.45
REMARK 500 ASP A 214 59.27 -150.01
REMARK 500 SER A 242 -159.67 -97.82
REMARK 500 SER A 242 -145.69 -97.82
REMARK 500 LEU A 281 -68.67 -96.93
REMARK 500 LEU A 281 -63.82 -100.86
REMARK 500 CYS A 286 -2.50 75.70
REMARK 500 ASP A 287 44.87 -147.06
REMARK 500 ASP A 307 83.33 73.43
REMARK 500 GLN A 323 139.23 78.83
REMARK 500 GLN A 323 138.95 78.83
REMARK 500 HIS A 444 48.90 -146.07
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1130 DISTANCE = 5.83 ANGSTROMS
REMARK 525 HOH A1131 DISTANCE = 5.84 ANGSTROMS
REMARK 525 HOH A1132 DISTANCE = 5.85 ANGSTROMS
REMARK 525 HOH A1133 DISTANCE = 5.92 ANGSTROMS
REMARK 525 HOH A1134 DISTANCE = 6.17 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue KQZ A 504
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507
DBREF 6S1H A 127 485 UNP Q13627 DYR1A_HUMAN 127 485
SEQADV 6S1H SER A 125 UNP Q13627 EXPRESSION TAG
SEQADV 6S1H MET A 126 UNP Q13627 EXPRESSION TAG
SEQRES 1 A 361 SER MET SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN
SEQRES 2 A 361 ASP GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS
SEQRES 3 A 361 ASN GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER
SEQRES 4 A 361 LEU ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA
SEQRES 5 A 361 TYR ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE
SEQRES 6 A 361 ILE LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE
SEQRES 7 A 361 GLU VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR
SEQRES 8 A 361 GLU MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE
SEQRES 9 A 361 MET PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU
SEQRES 10 A 361 SER TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE
SEQRES 11 A 361 ARG GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN
SEQRES 12 A 361 GLN MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU
SEQRES 13 A 361 LEU SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE
SEQRES 14 A 361 LEU LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL
SEQRES 15 A 361 ASP PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR
SEQRES 16 A 361 GLN PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL
SEQRES 17 A 361 LEU LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP
SEQRES 18 A 361 SER LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU
SEQRES 19 A 361 PRO LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN
SEQRES 20 A 361 LYS ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE
SEQRES 21 A 361 LEU ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS
SEQRES 22 A 361 LEU PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP
SEQRES 23 A 361 GLY LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU
SEQRES 24 A 361 HIS ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY
SEQRES 25 A 361 ARG ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR
SEQRES 26 A 361 LEU LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR
SEQRES 27 A 361 ASP PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN
SEQRES 28 A 361 HIS SER PHE PHE LYS LYS THR ALA ASP GLU
MODRES 6S1H PTR A 321 TYR MODIFIED RESIDUE
HET PTR A 321 46
HET SO4 A 501 5
HET SO4 A 502 5
HET SO4 A 503 5
HET KQZ A 504 31
HET EDO A 505 10
HET EDO A 506 10
HET EDO A 507 10
HETNAM PTR O-PHOSPHOTYROSINE
HETNAM SO4 SULFATE ION
HETNAM KQZ ~{N},~{N}-DIMETHYL-4-(1~{H}-PYRROLO[2,3-B]PYRIDIN-3-
HETNAM 2 KQZ YL)PYRIMIDIN-2-AMINE
HETNAM EDO 1,2-ETHANEDIOL
HETSYN PTR PHOSPHONOTYROSINE
HETSYN EDO ETHYLENE GLYCOL
FORMUL 1 PTR C9 H12 N O6 P
FORMUL 2 SO4 3(O4 S 2-)
FORMUL 5 KQZ C13 H13 N5
FORMUL 6 EDO 3(C2 H6 O2)
FORMUL 9 HOH *534(H2 O)
HELIX 1 AA1 TYR A 136 TYR A 140 5 5
HELIX 2 AA2 LYS A 193 HIS A 213 1 21
HELIX 3 AA3 ASN A 244 THR A 252 1 9
HELIX 4 AA4 SER A 258 ALA A 277 1 20
HELIX 5 AA5 LYS A 289 GLU A 291 5 3
HELIX 6 AA6 GLY A 315 ARG A 317 5 3
HELIX 7 AA7 SER A 324 ARG A 328 5 5
HELIX 8 AA8 SER A 329 LEU A 334 1 6
HELIX 9 AA9 LEU A 340 GLY A 357 1 18
HELIX 10 AB1 ASN A 365 GLY A 378 1 14
HELIX 11 AB2 PRO A 381 ASP A 386 1 6
HELIX 12 AB3 LYS A 390 PHE A 394 1 5
HELIX 13 AB4 LYS A 422 LEU A 427 1 6
HELIX 14 AB5 GLY A 433 ARG A 437 5 5
HELIX 15 AB6 THR A 445 LEU A 460 1 16
HELIX 16 AB7 GLN A 469 HIS A 476 1 8
SHEET 1 AA1 6 LYS A 154 TRP A 155 0
SHEET 2 AA1 6 TYR A 159 GLY A 168 -1 O TYR A 159 N TRP A 155
SHEET 3 AA1 6 GLY A 171 ASP A 178 -1 O LYS A 175 N SER A 163
SHEET 4 AA1 6 GLU A 183 ILE A 190 -1 O GLU A 183 N ASP A 178
SHEET 5 AA1 6 HIS A 233 PHE A 238 -1 O PHE A 238 N ALA A 186
SHEET 6 AA1 6 LEU A 224 PHE A 230 -1 N PHE A 228 O CYS A 235
SHEET 1 AA2 2 ILE A 283 ILE A 284 0
SHEET 2 AA2 2 CYS A 312 GLN A 313 -1 O CYS A 312 N ILE A 284
SHEET 1 AA3 2 ILE A 293 LEU A 295 0
SHEET 2 AA3 2 ILE A 303 ILE A 305 -1 O LYS A 304 N LEU A 294
SHEET 1 AA4 2 PHE A 395 LYS A 397 0
SHEET 2 AA4 2 TRP A 403 LEU A 405 -1 O ASN A 404 N GLU A 396
LINK C AGLN A 320 N APTR A 321 1555 1555 1.33
LINK C BGLN A 320 N BPTR A 321 1555 1555 1.33
LINK C APTR A 321 N ILE A 322 1555 1555 1.33
LINK C BPTR A 321 N ILE A 322 1555 1555 1.34
SITE 1 AC1 7 SER A 169 LYS A 193 LYS A 194 HOH A 689
SITE 2 AC1 7 HOH A 778 HOH A 842 HOH A 916
SITE 1 AC2 7 ASN A 232 ARG A 325 ARG A 328 GLU A 366
SITE 2 AC2 7 HOH A 631 HOH A 906 HOH A 928
SITE 1 AC3 4 LYS A 264 ARG A 300 SER A 301 HOH A 851
SITE 1 AC4 8 PHE A 170 ALA A 186 LYS A 188 PHE A 238
SITE 2 AC4 8 GLU A 239 LEU A 241 LEU A 294 EDO A 506
SITE 1 AC5 6 ASN A 198 GLN A 199 ILE A 202 TYR A 319
SITE 2 AC5 6 HOH A 633 HOH A 655
SITE 1 AC6 7 GLY A 166 ASN A 244 KQZ A 504 HOH A 622
SITE 2 AC6 7 HOH A 648 HOH A 751 HOH A 781
SITE 1 AC7 7 TYR A 243 ASN A 251 LEU A 274 HOH A 625
SITE 2 AC7 7 HOH A 755 HOH A 821 HOH A 853
CRYST1 99.630 69.680 67.690 90.00 117.80 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010037 0.000000 0.005292 0.00000
SCALE2 0.000000 0.014351 0.000000 0.00000
SCALE3 0.000000 0.000000 0.016701 0.00000