HEADER TRANSFERASE 20-JUN-19 6S22 TITLE CRYSTAL STRUCTURE OF THE TGGALNAC-T3 IN COMPLEX WITH UDP, MANGANESE TITLE 2 AND FGF23C CAVEAT 6S22 NGA F 201 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN-UDP ACETYLGALACTOSAMINYLTRANSFERASE; COMPND 5 EC: 2.4.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FIBROBLAST GROWTH FACTOR 23; COMPND 9 CHAIN: F; COMPND 10 SYNONYM: FGF-23,PHOSPHATONIN,TUMOR-DERIVED HYPOPHOSPHATEMIA-INDUCING COMPND 11 FACTOR; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: NOTE THAT THIS IS A MONOGLYCOPEPTIDE DERIVED FROM COMPND 14 FGF23: NT*PIPRRHTRSA T* DENOTES T-O-GALNAC SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TAENIOPYGIA GUTTATA; SOURCE 3 ORGANISM_COMMON: ZEBRA FINCH; SOURCE 4 ORGANISM_TAXID: 59729; SOURCE 5 GENE: GALNT3; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS GALNAC-TS, GALNAC-T3, LONG-RANGE GLYCOSYLATION PREFERENCE, (GLYCO) KEYWDS 2 PEPTIDES, MOLECULAR DYNAMICS, SPECIFICITY, ENZYME KINETICS, FGF23, KEYWDS 3 PHOSPHATE HOMEOSTASIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.DE LAS RIVAS,E.J.P.DANIEL,Y.NARIMATSU,I.COMPANON,K.KATO, AUTHOR 2 P.HERMOSILLA,A.THUREAU,L.CEBALLOS-LAITA,H.COELHO,P.BERNADO, AUTHOR 3 F.MARCELO,L.HANSEN,A.LOSTAO,F.CORZANA,H.CLAUSEN,T.A.GERKEN, AUTHOR 4 R.HURTADO-GUERRERO REVDAT 6 06-NOV-24 6S22 1 REMARK REVDAT 5 24-JAN-24 6S22 1 HETSYN REVDAT 4 29-JUL-20 6S22 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 04-MAR-20 6S22 1 JRNL REVDAT 2 22-JAN-20 6S22 1 JRNL REVDAT 1 25-DEC-19 6S22 0 JRNL AUTH M.DE LAS RIVAS,E.J.PAUL DANIEL,Y.NARIMATSU,I.COMPANON, JRNL AUTH 2 K.KATO,P.HERMOSILLA,A.THUREAU,L.CEBALLOS-LAITA,H.COELHO, JRNL AUTH 3 P.BERNADO,F.MARCELO,L.HANSEN,R.MAEDA,A.LOSTAO,F.CORZANA, JRNL AUTH 4 H.CLAUSEN,T.A.GERKEN,R.HURTADO-GUERRERO JRNL TITL MOLECULAR BASIS FOR FIBROBLAST GROWTH FACTOR 23 JRNL TITL 2 O-GLYCOSYLATION BY GALNAC-T3. JRNL REF NAT.CHEM.BIOL. V. 16 351 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 31932717 JRNL DOI 10.1038/S41589-019-0444-X REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3916 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 121 REMARK 3 SOLVENT ATOMS : 303 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.76000 REMARK 3 B22 (A**2) : -0.53000 REMARK 3 B33 (A**2) : 1.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.132 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.589 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4598 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4139 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6208 ; 1.729 ; 1.671 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9640 ; 1.370 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 7.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 253 ;33.533 ;22.292 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 760 ;15.782 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.267 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 575 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5046 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 976 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2161 ; 3.322 ; 3.396 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2160 ; 3.319 ; 3.394 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2696 ; 4.883 ; 5.070 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2697 ; 4.883 ; 5.073 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2437 ; 4.562 ; 4.040 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2434 ; 4.523 ; 4.033 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3507 ; 6.898 ; 5.807 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5254 ; 9.304 ;41.506 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5254 ; 9.304 ;41.506 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6S22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292103021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 51.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5NQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS PRECIPITANT MIX 4, NITRATE REMARK 280 PHOSPHATE BUFFER AND MORPHEUS BUFFER SYSTEM 1, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.47850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.73300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.41150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.73300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.47850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.41150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 PHE A 10 REMARK 465 LYS A 11 REMARK 465 THR A 12 REMARK 465 PHE A 13 REMARK 465 PHE A 14 REMARK 465 HIS A 15 REMARK 465 TRP A 16 REMARK 465 LYS A 17 REMARK 465 LEU A 18 REMARK 465 TRP A 19 REMARK 465 LYS A 20 REMARK 465 PHE A 21 REMARK 465 SER A 22 REMARK 465 ILE A 23 REMARK 465 ILE A 24 REMARK 465 VAL A 25 REMARK 465 PHE A 26 REMARK 465 VAL A 27 REMARK 465 PHE A 28 REMARK 465 LEU A 29 REMARK 465 VAL A 30 REMARK 465 PHE A 31 REMARK 465 LEU A 32 REMARK 465 PHE A 33 REMARK 465 LEU A 34 REMARK 465 LEU A 35 REMARK 465 GLN A 36 REMARK 465 ARG A 37 REMARK 465 GLU A 38 REMARK 465 VAL A 39 REMARK 465 GLY A 40 REMARK 465 VAL A 41 REMARK 465 GLN A 42 REMARK 465 ASP A 43 REMARK 465 PHE A 44 REMARK 465 LYS A 45 REMARK 465 ASP A 46 REMARK 465 GLU A 47 REMARK 465 ALA A 48 REMARK 465 GLY A 49 REMARK 465 ILE A 50 REMARK 465 GLU A 51 REMARK 465 PRO A 52 REMARK 465 VAL A 53 REMARK 465 VAL A 54 REMARK 465 GLY A 55 REMARK 465 LYS A 56 REMARK 465 LYS A 57 REMARK 465 SER A 58 REMARK 465 HIS A 59 REMARK 465 VAL A 60 REMARK 465 LEU A 61 REMARK 465 GLY A 62 REMARK 465 LEU A 63 REMARK 465 VAL A 64 REMARK 465 LEU A 65 REMARK 465 ASN A 66 REMARK 465 ALA A 67 REMARK 465 MET A 68 REMARK 465 ASN A 69 REMARK 465 ASN A 70 REMARK 465 ILE A 71 REMARK 465 LYS A 72 REMARK 465 GLY A 73 REMARK 465 ALA A 74 REMARK 465 LYS A 75 REMARK 465 PRO A 76 REMARK 465 LYS A 77 REMARK 465 MET A 78 REMARK 465 GLN A 79 REMARK 465 ILE A 80 REMARK 465 LYS A 81 REMARK 465 ALA A 82 REMARK 465 PRO A 83 REMARK 465 ILE A 84 REMARK 465 ARG A 85 REMARK 465 GLN A 86 REMARK 465 THR A 87 REMARK 465 LYS A 88 REMARK 465 VAL A 89 REMARK 465 PRO A 90 REMARK 465 GLY A 91 REMARK 465 GLU A 92 REMARK 465 ARG A 93 REMARK 465 LYS A 418 REMARK 465 SER A 419 REMARK 465 PRO A 420 REMARK 465 HIS A 421 REMARK 465 THR A 422 REMARK 465 PHE A 423 REMARK 465 PRO A 424 REMARK 465 LYS A 425 REMARK 465 ASP A 631 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 160 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 132 177.87 -56.66 REMARK 500 ASP A 227 120.96 -39.59 REMARK 500 HIS A 231 -104.87 -105.08 REMARK 500 GLN A 242 -37.36 72.85 REMARK 500 HIS A 277 55.65 -140.13 REMARK 500 HIS A 322 122.11 -27.90 REMARK 500 SER A 323 126.99 -26.77 REMARK 500 SER A 377 -112.17 40.29 REMARK 500 ILE A 384 -114.09 50.46 REMARK 500 ASP A 443 -133.83 47.26 REMARK 500 GLN A 555 -76.07 -111.80 REMARK 500 LYS A 575 40.88 -155.51 REMARK 500 PRO F 174 121.87 -38.05 REMARK 500 ARG F 175 -167.83 178.12 REMARK 500 ARG F 176 -45.39 123.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 717 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 275 OD2 REMARK 620 2 HIS A 277 NE2 100.5 REMARK 620 3 HIS A 413 NE2 92.7 93.7 REMARK 620 4 UDP A 716 O2A 94.8 91.9 169.7 REMARK 620 5 UDP A 716 O3B 85.4 169.0 95.4 78.2 REMARK 620 6 HOH A 963 O 173.6 85.9 85.7 86.1 88.6 REMARK 620 N 1 2 3 4 5 DBREF 6S22 A 1 631 UNP H0ZAB5 H0ZAB5_TAEGU 1 631 DBREF 6S22 F 170 181 UNP Q9GZV9 FGF23_HUMAN 170 181 SEQRES 1 A 631 MET ALA LEU LYS LYS ALA PRO LYS LEU PHE LYS THR PHE SEQRES 2 A 631 PHE HIS TRP LYS LEU TRP LYS PHE SER ILE ILE VAL PHE SEQRES 3 A 631 VAL PHE LEU VAL PHE LEU PHE LEU LEU GLN ARG GLU VAL SEQRES 4 A 631 GLY VAL GLN ASP PHE LYS ASP GLU ALA GLY ILE GLU PRO SEQRES 5 A 631 VAL VAL GLY LYS LYS SER HIS VAL LEU GLY LEU VAL LEU SEQRES 6 A 631 ASN ALA MET ASN ASN ILE LYS GLY ALA LYS PRO LYS MET SEQRES 7 A 631 GLN ILE LYS ALA PRO ILE ARG GLN THR LYS VAL PRO GLY SEQRES 8 A 631 GLU ARG HIS CYS LEU PRO GLY HIS TYR THR PRO VAL GLU SEQRES 9 A 631 LEU LYS PRO PHE LEU ASP ARG PRO LEU GLN ASP PRO ASN SEQRES 10 A 631 ALA PRO GLY ALA SER GLY LYS ALA PHE LYS THR ILE ASN SEQRES 11 A 631 LEU ASN SER GLU GLU GLN LYS GLU LYS GLN ALA GLY GLU SEQRES 12 A 631 GLU LYS HIS CYS PHE ASN ALA PHE ALA SER ASP ARG ILE SEQRES 13 A 631 SER LEU HIS ARG ASP LEU GLY PRO ASP THR ARG PRO PRO SEQRES 14 A 631 GLU CYS ILE GLU GLN LYS PHE LYS ARG CYS PRO PRO LEU SEQRES 15 A 631 PRO THR THR SER ILE ILE ILE VAL PHE HIS ASN GLU ALA SEQRES 16 A 631 TRP SER THR LEU LEU ARG THR VAL HIS SER VAL MET TYR SEQRES 17 A 631 THR SER PRO ALA ILE LEU LEU LYS GLU ILE ILE LEU VAL SEQRES 18 A 631 ASP ASP ALA SER VAL ASP GLU TYR LEU HIS ASP LYS LEU SEQRES 19 A 631 ASP GLU TYR VAL LYS GLN PHE GLN ILE VAL LYS VAL VAL SEQRES 20 A 631 ARG GLN LYS GLU ARG LYS GLY LEU ILE THR ALA ARG LEU SEQRES 21 A 631 LEU GLY ALA SER VAL ALA THR GLY GLU THR LEU THR PHE SEQRES 22 A 631 LEU ASP ALA HIS CYS GLU CYS PHE TYR GLY TRP LEU GLU SEQRES 23 A 631 PRO LEU LEU ALA ARG ILE ALA GLU ASN PRO VAL ALA VAL SEQRES 24 A 631 VAL SER PRO ASP ILE ALA SER ILE ASP LEU ASN THR PHE SEQRES 25 A 631 GLU PHE SER LYS PRO SER PRO TYR GLY HIS SER HIS ASN SEQRES 26 A 631 ARG GLY ASN PHE ASP TRP SER LEU SER PHE GLY TRP GLU SEQRES 27 A 631 SER LEU PRO LYS HIS GLU ASN LYS ARG ARG LYS ASP GLU SEQRES 28 A 631 THR TYR PRO ILE ARG THR PRO THR PHE ALA GLY GLY LEU SEQRES 29 A 631 PHE SER ILE SER LYS ASP TYR PHE GLU TYR ILE GLY SER SEQRES 30 A 631 TYR ASP GLU GLU MET GLU ILE TRP GLY GLY GLU ASN ILE SEQRES 31 A 631 GLU MET SER PHE ARG VAL TRP GLN CYS GLY GLY GLN LEU SEQRES 32 A 631 GLU ILE MET PRO CYS SER VAL VAL GLY HIS VAL PHE ARG SEQRES 33 A 631 SER LYS SER PRO HIS THR PHE PRO LYS GLY THR GLN VAL SEQRES 34 A 631 ILE THR ARG ASN GLN VAL ARG LEU ALA GLU VAL TRP MET SEQRES 35 A 631 ASP GLU TYR LYS GLU ILE PHE TYR ARG ARG ASN THR GLU SEQRES 36 A 631 ALA ALA LYS ILE VAL LYS GLN LYS THR PHE GLY ASP ILE SEQRES 37 A 631 SER LYS ARG ILE ASP LEU ARG GLN ARG LEU GLN CYS LYS SEQRES 38 A 631 ASN PHE THR TRP TYR LEU SER ASN VAL TYR PRO GLU ALA SEQRES 39 A 631 TYR VAL PRO ASP LEU ASN PRO LEU PHE SER GLY TYR LEU SEQRES 40 A 631 LYS ASN ILE GLY ASN ARG MET CYS LEU ASP VAL GLY GLU SEQRES 41 A 631 ASN ASN HIS GLY GLY LYS PRO LEU ILE MET TYR SER CYS SEQRES 42 A 631 HIS GLY LEU GLY GLY ASN GLN TYR PHE GLU TYR SER ALA SEQRES 43 A 631 HIS HIS GLU ILE ARG HIS ASN ILE GLN LYS GLU LEU CYS SEQRES 44 A 631 LEU HIS ALA SER LYS GLY PRO VAL GLN LEU ARG GLU CYS SEQRES 45 A 631 THR TYR LYS GLY GLN LYS THR PHE ALA VAL GLY GLU GLU SEQRES 46 A 631 GLN TRP LEU HIS GLN LYS ASP GLN THR LEU TYR ASN GLU SEQRES 47 A 631 ALA LEU HIS MET CYS LEU THR GLY ASN GLY GLU HIS PRO SEQRES 48 A 631 SER LEU ALA SER CYS ASN PRO SER ASP PRO PHE GLN LYS SEQRES 49 A 631 TRP ILE PHE GLY GLN ASN ASP SEQRES 1 F 12 ASN THR PRO ILE PRO ARG ARG HIS THR ARG SER ALA HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HET EDO A 708 4 HET EDO A 709 4 HET EDO A 710 4 HET EDO A 711 4 HET EDO A 712 4 HET EDO A 713 4 HET EDO A 714 4 HET SO4 A 715 5 HET UDP A 716 25 HET MN A 717 1 HET NAG A 718 14 HET GOL A 719 6 HET NGA F 201 14 HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 3 EDO 14(C2 H6 O2) FORMUL 17 SO4 O4 S 2- FORMUL 18 UDP C9 H14 N2 O12 P2 FORMUL 19 MN MN 2+ FORMUL 20 NAG C8 H15 N O6 FORMUL 21 GOL C3 H8 O3 FORMUL 22 NGA C8 H15 N O6 FORMUL 23 HOH *303(H2 O) HELIX 1 AA1 GLY A 120 LYS A 124 5 5 HELIX 2 AA2 ASN A 132 CYS A 147 1 16 HELIX 3 AA3 ASN A 149 ASP A 154 1 6 HELIX 4 AA4 PRO A 168 GLU A 173 1 6 HELIX 5 AA5 ALA A 195 SER A 210 1 16 HELIX 6 AA6 ASP A 227 LEU A 230 5 4 HELIX 7 AA7 HIS A 231 GLN A 240 1 10 HELIX 8 AA8 GLY A 254 ALA A 266 1 13 HELIX 9 AA9 TRP A 284 ASN A 295 1 12 HELIX 10 AB1 PRO A 341 ARG A 348 1 8 HELIX 11 AB2 LYS A 369 ILE A 375 1 7 HELIX 12 AB3 GLY A 387 CYS A 399 1 13 HELIX 13 AB4 THR A 427 MET A 442 1 16 HELIX 14 AB5 TYR A 445 ASN A 453 1 9 HELIX 15 AB6 ASN A 453 GLN A 462 1 10 HELIX 16 AB7 ILE A 468 LEU A 478 1 11 HELIX 17 AB8 ASN A 482 VAL A 490 1 9 HELIX 18 AB9 GLY A 537 TYR A 541 5 5 HELIX 19 AC1 VAL A 582 GLU A 585 5 4 HELIX 20 AC2 ASP A 620 GLN A 623 5 4 SHEET 1 AA1 5 VAL A 244 GLN A 249 0 SHEET 2 AA1 5 LEU A 215 ASP A 223 1 N ASP A 222 O GLN A 249 SHEET 3 AA1 5 THR A 185 PHE A 191 1 N ILE A 187 O ILE A 219 SHEET 4 AA1 5 THR A 270 LEU A 274 1 O THR A 272 N SER A 186 SHEET 5 AA1 5 PHE A 365 SER A 368 -1 O ILE A 367 N LEU A 271 SHEET 1 AA2 3 CYS A 278 CYS A 280 0 SHEET 2 AA2 3 GLN A 402 VAL A 414 -1 O GLY A 412 N GLU A 279 SHEET 3 AA2 3 ALA A 298 ILE A 307 1 N ASP A 303 O SER A 409 SHEET 1 AA3 3 CYS A 278 CYS A 280 0 SHEET 2 AA3 3 GLN A 402 VAL A 414 -1 O GLY A 412 N GLU A 279 SHEET 3 AA3 3 ILE A 355 ARG A 356 -1 N ILE A 355 O ILE A 405 SHEET 1 AA4 2 ASN A 325 PHE A 329 0 SHEET 2 AA4 2 PHE A 335 SER A 339 -1 O GLY A 336 N ASN A 328 SHEET 1 AA5 6 GLN A 568 GLU A 571 0 SHEET 2 AA5 6 LEU A 558 HIS A 561 -1 N HIS A 561 O GLN A 568 SHEET 3 AA5 6 ILE A 550 HIS A 552 -1 N ILE A 550 O LEU A 560 SHEET 4 AA5 6 PHE A 542 TYR A 544 -1 N GLU A 543 O ARG A 551 SHEET 5 AA5 6 PHE A 503 ASN A 509 -1 N GLY A 505 O PHE A 542 SHEET 6 AA5 6 TRP A 625 GLY A 628 -1 O ILE A 626 N LYS A 508 SHEET 1 AA6 2 CYS A 515 ASP A 517 0 SHEET 2 AA6 2 ILE A 529 TYR A 531 -1 O TYR A 531 N CYS A 515 SHEET 1 AA7 4 TRP A 587 HIS A 589 0 SHEET 2 AA7 4 LEU A 595 ASN A 597 -1 O TYR A 596 N LEU A 588 SHEET 3 AA7 4 MET A 602 THR A 605 -1 O MET A 602 N ASN A 597 SHEET 4 AA7 4 SER A 612 ALA A 614 -1 O SER A 612 N THR A 605 SSBOND 1 CYS A 95 CYS A 179 1555 1555 2.04 SSBOND 2 CYS A 171 CYS A 408 1555 1555 2.16 SSBOND 3 CYS A 399 CYS A 480 1555 1555 2.10 SSBOND 4 CYS A 515 CYS A 533 1555 1555 2.17 SSBOND 5 CYS A 559 CYS A 572 1555 1555 2.12 SSBOND 6 CYS A 603 CYS A 616 1555 1555 2.17 LINK ND2 ASN A 482 C1 NAG A 718 1555 1555 1.43 LINK OG1 THR F 171 C1 NGA F 201 1555 1555 1.43 LINK OD2 ASP A 275 MN MN A 717 1555 1555 2.03 LINK NE2 HIS A 277 MN MN A 717 1555 1555 2.08 LINK NE2 HIS A 413 MN MN A 717 1555 1555 2.16 LINK O2A UDP A 716 MN MN A 717 1555 1555 2.13 LINK O3B UDP A 716 MN MN A 717 1555 1555 2.13 LINK MN MN A 717 O HOH A 963 1555 1555 2.54 CISPEP 1 CYS A 179 PRO A 180 0 -2.45 CRYST1 50.957 104.823 143.466 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019624 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006970 0.00000