HEADER TRANSPORT PROTEIN 21-JUN-19 6S2J TITLE SQUARE CONFORMATION OF KTRA R16K MUTANT RING WITH BOUND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: KTR SYSTEM POTASSIUM UPTAKE PROTEIN A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: K(+)-UPTAKE PROTEIN KTRA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: KTRA, YUAA, BSU31090; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RCK DOMAIN, POTASSIUM HOMEOSTASIS, CATION CHANNEL, MAGNESIUM, SQUARE KEYWDS 2 CONFORMATION OCTAMERIC RING, ATP, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.M.TEIXEIRA-DUARTE,F.FONSECA,J.H.MORAIS-CABRAL REVDAT 2 24-JAN-24 6S2J 1 REMARK LINK REVDAT 1 08-JAN-20 6S2J 0 JRNL AUTH C.M.TEIXEIRA-DUARTE,F.FONSECA,J.H.MORAIS CABRAL JRNL TITL ACTIVATION OF A NUCLEOTIDE-DEPENDENT RCK DOMAIN REQUIRES JRNL TITL 2 BINDING OF A CATION COFACTOR TO A CONSERVED SITE. JRNL REF ELIFE V. 8 2019 JRNL REFN ESSN 2050-084X JRNL PMID 31868587 JRNL DOI 10.7554/ELIFE.50661 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.730 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 17870 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.160 REMARK 3 FREE R VALUE TEST SET COUNT : 3506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1714 - 7.7944 0.98 1276 117 0.1479 0.1669 REMARK 3 2 7.7944 - 6.1914 0.98 1226 160 0.1848 0.1976 REMARK 3 3 6.1914 - 5.4102 0.97 1218 148 0.1792 0.2285 REMARK 3 4 5.4102 - 4.9161 0.97 1219 171 0.1546 0.1756 REMARK 3 5 4.9161 - 4.5641 0.98 1261 120 0.1310 0.1947 REMARK 3 6 4.5641 - 4.2952 0.99 1282 125 0.1464 0.1856 REMARK 3 7 4.2952 - 4.0802 0.97 1238 113 0.1756 0.2472 REMARK 3 8 4.0802 - 3.9027 0.98 1234 152 0.1815 0.2399 REMARK 3 9 3.9027 - 3.7525 0.97 1233 149 0.1974 0.2414 REMARK 3 10 3.7525 - 3.6231 0.98 1253 118 0.1963 0.2280 REMARK 3 11 3.6231 - 3.5099 0.99 1259 144 0.2072 0.2689 REMARK 3 12 3.5099 - 3.4096 0.98 1252 140 0.2077 0.3373 REMARK 3 13 3.4096 - 3.3198 0.98 1223 136 0.2410 0.3419 REMARK 3 14 3.3198 - 3.2388 0.99 1291 121 0.2660 0.2619 REMARK 3 15 3.2388 - 3.1652 0.98 1264 146 0.2760 0.3670 REMARK 3 16 3.1652 - 3.0979 0.99 1244 130 0.2535 0.3652 REMARK 3 17 3.0979 - 3.0359 0.98 1208 196 0.2575 0.3000 REMARK 3 18 3.0359 - 2.9787 0.98 1310 105 0.2632 0.3479 REMARK 3 19 2.9787 - 2.9255 0.99 1218 119 0.2951 0.2458 REMARK 3 20 2.9255 - 2.8759 0.98 1265 155 0.3162 0.3911 REMARK 3 21 2.8759 - 2.8295 0.99 1235 165 0.3347 0.4660 REMARK 3 22 2.8295 - 2.7860 0.98 1232 140 0.3477 0.3618 REMARK 3 23 2.7860 - 2.7450 0.98 1267 132 0.3534 0.4050 REMARK 3 24 2.7450 - 2.7063 0.98 1209 164 0.3807 0.3648 REMARK 3 25 2.7063 - 2.6698 0.85 1073 140 0.3897 0.4121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3532 REMARK 3 ANGLE : 1.086 4791 REMARK 3 CHIRALITY : 0.042 552 REMARK 3 PLANARITY : 0.004 598 REMARK 3 DIHEDRAL : 14.891 1318 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0449 80.8031 -22.6700 REMARK 3 T TENSOR REMARK 3 T11: 0.9495 T22: 0.7551 REMARK 3 T33: 0.6302 T12: 0.3026 REMARK 3 T13: -0.0435 T23: 0.0808 REMARK 3 L TENSOR REMARK 3 L11: 6.8444 L22: 5.1207 REMARK 3 L33: 8.1383 L12: 1.2841 REMARK 3 L13: -1.4383 L23: 3.7155 REMARK 3 S TENSOR REMARK 3 S11: 0.3468 S12: 1.3550 S13: -0.1269 REMARK 3 S21: -1.3582 S22: -0.2944 S23: -0.0674 REMARK 3 S31: -0.1031 S32: -0.1363 S33: -0.0985 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4671 89.1657 -9.7875 REMARK 3 T TENSOR REMARK 3 T11: 0.7995 T22: 0.7625 REMARK 3 T33: 0.8225 T12: 0.0364 REMARK 3 T13: -0.0111 T23: 0.1944 REMARK 3 L TENSOR REMARK 3 L11: 5.3743 L22: 4.2320 REMARK 3 L33: 2.7933 L12: 4.0893 REMARK 3 L13: -3.0354 L23: 1.2391 REMARK 3 S TENSOR REMARK 3 S11: 0.5538 S12: -0.2095 S13: 0.5660 REMARK 3 S21: -0.7363 S22: -0.8357 S23: -0.7241 REMARK 3 S31: -0.1826 S32: 0.1193 S33: 0.0768 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5701 77.5253 -0.2469 REMARK 3 T TENSOR REMARK 3 T11: 0.6007 T22: 0.7622 REMARK 3 T33: 0.7424 T12: 0.1015 REMARK 3 T13: -0.1541 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.9459 L22: 8.1025 REMARK 3 L33: 2.0833 L12: 3.9734 REMARK 3 L13: 1.3289 L23: -6.1465 REMARK 3 S TENSOR REMARK 3 S11: 0.6456 S12: 0.3285 S13: -0.1029 REMARK 3 S21: 0.1551 S22: -0.5182 S23: 0.8224 REMARK 3 S31: -0.8937 S32: -0.2843 S33: 0.0699 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3160 80.0188 -1.4610 REMARK 3 T TENSOR REMARK 3 T11: 0.8427 T22: 1.2401 REMARK 3 T33: 1.3159 T12: 0.2931 REMARK 3 T13: -0.0399 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 4.2370 L22: 9.2419 REMARK 3 L33: 8.2719 L12: 0.1167 REMARK 3 L13: -1.5487 L23: -5.5383 REMARK 3 S TENSOR REMARK 3 S11: -0.2264 S12: -0.8488 S13: -0.5462 REMARK 3 S21: 0.7372 S22: 0.5870 S23: 2.0320 REMARK 3 S31: -0.5796 S32: -1.9577 S33: -0.4504 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3065 82.8745 5.3348 REMARK 3 T TENSOR REMARK 3 T11: 1.0964 T22: 1.2083 REMARK 3 T33: 1.0290 T12: 0.3360 REMARK 3 T13: -0.0116 T23: -0.0755 REMARK 3 L TENSOR REMARK 3 L11: 2.7875 L22: 2.2598 REMARK 3 L33: 2.4928 L12: -0.1483 REMARK 3 L13: 5.5126 L23: -2.7984 REMARK 3 S TENSOR REMARK 3 S11: -0.6860 S12: -0.8611 S13: -1.0637 REMARK 3 S21: 1.2069 S22: 0.4680 S23: 0.4443 REMARK 3 S31: -1.3975 S32: -1.2592 S33: 0.3350 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.0744 73.4589 7.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.9014 T22: 0.6319 REMARK 3 T33: 0.7635 T12: -0.1078 REMARK 3 T13: -0.1598 T23: 0.1716 REMARK 3 L TENSOR REMARK 3 L11: 6.1046 L22: 2.6953 REMARK 3 L33: 9.3163 L12: -3.5030 REMARK 3 L13: -1.8888 L23: 3.6442 REMARK 3 S TENSOR REMARK 3 S11: 0.1004 S12: -0.4416 S13: -0.1296 REMARK 3 S21: 0.8611 S22: -0.5461 S23: -0.1664 REMARK 3 S31: -1.2050 S32: 0.3636 S33: 0.5110 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2888 66.2432 10.0883 REMARK 3 T TENSOR REMARK 3 T11: 0.8761 T22: 0.7790 REMARK 3 T33: 0.8233 T12: -0.2013 REMARK 3 T13: -0.2335 T23: 0.3539 REMARK 3 L TENSOR REMARK 3 L11: 5.8451 L22: 9.6754 REMARK 3 L33: 8.8587 L12: -1.2221 REMARK 3 L13: 0.0576 L23: 0.8628 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -1.0610 S13: -0.9865 REMARK 3 S21: 1.1191 S22: -0.2524 S23: -0.8488 REMARK 3 S31: 0.1958 S32: 0.7812 S33: 0.1320 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 82 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7881 59.2298 0.2354 REMARK 3 T TENSOR REMARK 3 T11: 0.5604 T22: 0.5893 REMARK 3 T33: 1.0950 T12: -0.0869 REMARK 3 T13: -0.2013 T23: 0.1990 REMARK 3 L TENSOR REMARK 3 L11: 2.5949 L22: 7.0764 REMARK 3 L33: 9.5127 L12: -2.8724 REMARK 3 L13: -4.2745 L23: 1.7438 REMARK 3 S TENSOR REMARK 3 S11: -0.2065 S12: -0.2588 S13: -0.7246 REMARK 3 S21: -0.0859 S22: -0.2731 S23: 0.7087 REMARK 3 S31: 0.3098 S32: 0.0825 S33: 0.5626 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5915 61.0405 -8.3620 REMARK 3 T TENSOR REMARK 3 T11: 0.6774 T22: 0.9143 REMARK 3 T33: 1.1521 T12: 0.1339 REMARK 3 T13: -0.3247 T23: -0.1052 REMARK 3 L TENSOR REMARK 3 L11: 2.2881 L22: 10.1825 REMARK 3 L33: 5.8304 L12: -3.1082 REMARK 3 L13: -5.6526 L23: 2.8572 REMARK 3 S TENSOR REMARK 3 S11: -0.2138 S12: 0.4533 S13: -1.1589 REMARK 3 S21: -0.9292 S22: -1.2247 S23: 1.2495 REMARK 3 S31: -0.7286 S32: -0.6826 S33: 1.5374 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0672 80.3485 -14.3233 REMARK 3 T TENSOR REMARK 3 T11: 0.7905 T22: 0.8171 REMARK 3 T33: 0.8505 T12: 0.2021 REMARK 3 T13: -0.2344 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 2.4029 L22: 2.4386 REMARK 3 L33: 8.4613 L12: -1.8493 REMARK 3 L13: 0.5623 L23: -8.1356 REMARK 3 S TENSOR REMARK 3 S11: 0.2038 S12: -0.1278 S13: 0.2960 REMARK 3 S21: -0.3585 S22: -0.2329 S23: -0.5918 REMARK 3 S31: 0.3666 S32: -0.8687 S33: -0.4102 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6729 86.2247 -14.3232 REMARK 3 T TENSOR REMARK 3 T11: 0.8693 T22: 0.9865 REMARK 3 T33: 0.8726 T12: 0.3223 REMARK 3 T13: -0.2907 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 7.1817 L22: 2.7855 REMARK 3 L33: 5.1073 L12: 3.6410 REMARK 3 L13: -0.7812 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.4036 S12: 1.5750 S13: -0.1469 REMARK 3 S21: -0.8600 S22: -0.4394 S23: 0.6696 REMARK 3 S31: 0.1604 S32: 0.3488 S33: 0.1400 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2659 100.8012 -18.0561 REMARK 3 T TENSOR REMARK 3 T11: 1.7787 T22: 1.1479 REMARK 3 T33: 1.1982 T12: 1.3255 REMARK 3 T13: -0.5112 T23: -0.2213 REMARK 3 L TENSOR REMARK 3 L11: 2.5509 L22: 3.6278 REMARK 3 L33: 3.2674 L12: -2.1538 REMARK 3 L13: 1.4117 L23: -1.6639 REMARK 3 S TENSOR REMARK 3 S11: 1.5011 S12: -0.1107 S13: 0.8723 REMARK 3 S21: -1.9070 S22: -1.1604 S23: 0.6952 REMARK 3 S31: -1.5850 S32: -2.9202 S33: -0.0417 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2276 101.0719 -7.1072 REMARK 3 T TENSOR REMARK 3 T11: 2.0200 T22: 0.8410 REMARK 3 T33: 0.8676 T12: 0.3986 REMARK 3 T13: -0.1605 T23: -0.0870 REMARK 3 L TENSOR REMARK 3 L11: 8.7925 L22: 5.7634 REMARK 3 L33: 8.1018 L12: 0.3192 REMARK 3 L13: -3.4097 L23: -3.6151 REMARK 3 S TENSOR REMARK 3 S11: 0.6278 S12: -0.4138 S13: 0.6714 REMARK 3 S21: 1.8036 S22: -0.0369 S23: 0.4630 REMARK 3 S31: -2.4108 S32: -0.0839 S33: -0.5451 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 204 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7334 91.4577 -19.6723 REMARK 3 T TENSOR REMARK 3 T11: 0.9490 T22: 1.2987 REMARK 3 T33: 0.7588 T12: 0.3378 REMARK 3 T13: -0.2050 T23: -0.1105 REMARK 3 L TENSOR REMARK 3 L11: 8.6857 L22: 2.7042 REMARK 3 L33: 7.0057 L12: 5.8327 REMARK 3 L13: 0.0903 L23: 6.9346 REMARK 3 S TENSOR REMARK 3 S11: -0.4742 S12: 2.0169 S13: 0.0087 REMARK 3 S21: 0.2311 S22: 0.7944 S23: -0.4060 REMARK 3 S31: -0.5938 S32: -0.0678 S33: -0.2774 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S2J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292102733. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954240 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17872 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 46.165 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.86800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4J90 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM TRIS-HCL PH 8.5; 8% POLYETHYLENE REMARK 280 GLYCOL 8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.63800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.63800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.22550 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.63800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.63800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.22550 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 61.63800 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 61.63800 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 42.22550 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 61.63800 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 61.63800 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 42.22550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 123.27600 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 123.27600 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 123.27600 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 123.27600 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 ILE A 4 REMARK 465 LYS A 5 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 ILE B 4 REMARK 465 LYS B 5 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 31 CB CG CD OE1 OE2 REMARK 480 GLU A 40 CB CG CD OE1 OE2 REMARK 480 ASN A 70 CB CG OD1 ND2 REMARK 480 GLU A 72 CB CG CD OE1 OE2 REMARK 480 GLU A 150 CB CG CD OE1 OE2 REMARK 480 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 480 LYS A 161 CG CD CE NZ REMARK 480 LYS A 165 CB CG CD CE NZ REMARK 480 ARG A 173 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS A 175 CB CG CD CE NZ REMARK 480 LYS A 184 CB CG CD CE NZ REMARK 480 ASP A 188 CB CG OD1 OD2 REMARK 480 GLU A 196 CB CG CD OE1 OE2 REMARK 480 ARG A 216 CD NE CZ NH1 NH2 REMARK 480 LYS B 23 CG CD CE NZ REMARK 480 GLU B 31 CB CG CD OE1 OE2 REMARK 480 LYS B 111 CD CE NZ REMARK 480 LYS B 115 CD CE NZ REMARK 480 GLU B 150 CB CG CD OE1 OE2 REMARK 480 ARG B 160 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 161 CD CE NZ REMARK 480 LYS B 165 CG CD CE NZ REMARK 480 LYS B 184 CB CG CD CE NZ REMARK 480 ARG B 200 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 211 CD CE NZ REMARK 480 LYS B 212 CG CD CE NZ REMARK 480 LYS B 215 CG CD CE NZ REMARK 480 GLU B 220 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB3 GLU A 150 HE1 HIS A 210 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 148 -168.70 -166.79 REMARK 500 HIS A 186 19.34 55.00 REMARK 500 SER B 148 -169.52 -164.83 REMARK 500 HIS B 186 19.09 54.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 125 OE2 REMARK 620 2 ATP A 601 O2G 101.9 REMARK 620 3 ATP A 602 O2G 91.7 160.4 REMARK 620 4 HOH A 701 O 160.7 62.1 101.6 REMARK 620 5 HOH A 702 O 96.2 92.9 71.4 75.2 REMARK 620 6 GLU B 125 OE2 99.3 98.4 93.2 94.0 158.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 603 DBREF 6S2J A 1 222 UNP O32080 KTRA_BACSU 1 222 DBREF 6S2J B 1 222 UNP O32080 KTRA_BACSU 1 222 SEQADV 6S2J LYS A 16 UNP O32080 ARG 16 ENGINEERED MUTATION SEQADV 6S2J LYS B 16 UNP O32080 ARG 16 ENGINEERED MUTATION SEQRES 1 A 222 MET GLY ARG ILE LYS ASN LYS GLN PHE ALA VAL ILE GLY SEQRES 2 A 222 LEU GLY LYS PHE GLY GLY SER ILE CYS LYS GLU LEU HIS SEQRES 3 A 222 ARG MET GLY HIS GLU VAL LEU ALA VAL ASP ILE ASN GLU SEQRES 4 A 222 GLU LYS VAL ASN ALA TYR ALA SER TYR ALA THR HIS ALA SEQRES 5 A 222 VAL ILE ALA ASN ALA THR GLU GLU ASN GLU LEU LEU SER SEQRES 6 A 222 LEU GLY ILE ARG ASN PHE GLU TYR VAL ILE VAL ALA ILE SEQRES 7 A 222 GLY ALA ASN ILE GLN ALA SER THR LEU THR THR LEU LEU SEQRES 8 A 222 LEU LYS GLU LEU ASP ILE PRO ASN ILE TRP VAL LYS ALA SEQRES 9 A 222 GLN ASN TYR TYR HIS HIS LYS VAL LEU GLU LYS ILE GLY SEQRES 10 A 222 ALA ASP ARG ILE ILE HIS PRO GLU LYS ASP MET GLY VAL SEQRES 11 A 222 LYS ILE ALA GLN SER LEU SER ASP GLU ASN VAL LEU ASN SEQRES 12 A 222 TYR ILE ASP LEU SER ASP GLU TYR SER ILE VAL GLU LEU SEQRES 13 A 222 LEU ALA THR ARG LYS LEU ASP SER LYS SER ILE ILE ASP SEQRES 14 A 222 LEU ASN VAL ARG ALA LYS TYR GLY CYS THR ILE LEU ALA SEQRES 15 A 222 ILE LYS HIS HIS GLY ASP ILE CYS LEU SER PRO ALA PRO SEQRES 16 A 222 GLU ASP ILE ILE ARG GLU GLN ASP CYS LEU VAL ILE MET SEQRES 17 A 222 GLY HIS LYS LYS ASP ILE LYS ARG PHE GLU ASN GLU GLY SEQRES 18 A 222 MET SEQRES 1 B 222 MET GLY ARG ILE LYS ASN LYS GLN PHE ALA VAL ILE GLY SEQRES 2 B 222 LEU GLY LYS PHE GLY GLY SER ILE CYS LYS GLU LEU HIS SEQRES 3 B 222 ARG MET GLY HIS GLU VAL LEU ALA VAL ASP ILE ASN GLU SEQRES 4 B 222 GLU LYS VAL ASN ALA TYR ALA SER TYR ALA THR HIS ALA SEQRES 5 B 222 VAL ILE ALA ASN ALA THR GLU GLU ASN GLU LEU LEU SER SEQRES 6 B 222 LEU GLY ILE ARG ASN PHE GLU TYR VAL ILE VAL ALA ILE SEQRES 7 B 222 GLY ALA ASN ILE GLN ALA SER THR LEU THR THR LEU LEU SEQRES 8 B 222 LEU LYS GLU LEU ASP ILE PRO ASN ILE TRP VAL LYS ALA SEQRES 9 B 222 GLN ASN TYR TYR HIS HIS LYS VAL LEU GLU LYS ILE GLY SEQRES 10 B 222 ALA ASP ARG ILE ILE HIS PRO GLU LYS ASP MET GLY VAL SEQRES 11 B 222 LYS ILE ALA GLN SER LEU SER ASP GLU ASN VAL LEU ASN SEQRES 12 B 222 TYR ILE ASP LEU SER ASP GLU TYR SER ILE VAL GLU LEU SEQRES 13 B 222 LEU ALA THR ARG LYS LEU ASP SER LYS SER ILE ILE ASP SEQRES 14 B 222 LEU ASN VAL ARG ALA LYS TYR GLY CYS THR ILE LEU ALA SEQRES 15 B 222 ILE LYS HIS HIS GLY ASP ILE CYS LEU SER PRO ALA PRO SEQRES 16 B 222 GLU ASP ILE ILE ARG GLU GLN ASP CYS LEU VAL ILE MET SEQRES 17 B 222 GLY HIS LYS LYS ASP ILE LYS ARG PHE GLU ASN GLU GLY SEQRES 18 B 222 MET HET ATP A 601 40 HET ATP A 602 40 HET MG A 603 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 ATP 2(C10 H16 N5 O13 P3) FORMUL 5 MG MG 2+ FORMUL 6 HOH *2(H2 O) HELIX 1 AA1 GLY A 15 MET A 28 1 14 HELIX 2 AA2 ASN A 38 ALA A 46 1 9 HELIX 3 AA3 SER A 47 ALA A 49 5 3 HELIX 4 AA4 GLU A 59 GLY A 67 1 9 HELIX 5 AA5 ILE A 68 PHE A 71 5 4 HELIX 6 AA6 ASN A 81 LEU A 95 1 15 HELIX 7 AA7 ASN A 106 ILE A 116 1 11 HELIX 8 AA8 HIS A 123 ASP A 138 1 16 HELIX 9 AA9 THR A 159 ASP A 163 5 5 HELIX 10 AB1 LYS A 211 GLY A 221 1 11 HELIX 11 AB2 GLY B 15 MET B 28 1 14 HELIX 12 AB3 ASN B 38 ALA B 46 1 9 HELIX 13 AB4 SER B 47 ALA B 49 5 3 HELIX 14 AB5 GLU B 59 LEU B 66 1 8 HELIX 15 AB6 GLY B 67 PHE B 71 5 5 HELIX 16 AB7 ASN B 81 LEU B 95 1 15 HELIX 17 AB8 ASN B 106 ILE B 116 1 11 HELIX 18 AB9 HIS B 123 ASP B 138 1 16 HELIX 19 AC1 THR B 159 ASP B 163 5 5 HELIX 20 AC2 LYS B 211 GLY B 221 1 11 SHEET 1 AA1 6 HIS A 51 ILE A 54 0 SHEET 2 AA1 6 GLU A 31 ASP A 36 1 N ALA A 34 O VAL A 53 SHEET 3 AA1 6 GLN A 8 ILE A 12 1 N VAL A 11 O LEU A 33 SHEET 4 AA1 6 TYR A 73 VAL A 76 1 O ILE A 75 N ALA A 10 SHEET 5 AA1 6 ASN A 99 LYS A 103 1 O TRP A 101 N VAL A 76 SHEET 6 AA1 6 ARG A 120 ILE A 122 1 O ILE A 122 N VAL A 102 SHEET 1 AA2 5 VAL A 141 ASP A 146 0 SHEET 2 AA2 5 TYR A 151 LEU A 157 -1 O GLU A 155 N LEU A 142 SHEET 3 AA2 5 CYS A 204 HIS A 210 -1 O LEU A 205 N LEU A 156 SHEET 4 AA2 5 THR A 179 HIS A 185 -1 N LEU A 181 O VAL A 206 SHEET 5 AA2 5 ASP A 188 LEU A 191 -1 O CYS A 190 N ILE A 183 SHEET 1 AA3 2 LYS A 165 SER A 166 0 SHEET 2 AA3 2 ILE A 198 ILE A 199 -1 O ILE A 199 N LYS A 165 SHEET 1 AA4 6 HIS B 51 ILE B 54 0 SHEET 2 AA4 6 GLU B 31 ASP B 36 1 N ALA B 34 O VAL B 53 SHEET 3 AA4 6 GLN B 8 ILE B 12 1 N VAL B 11 O LEU B 33 SHEET 4 AA4 6 TYR B 73 VAL B 76 1 O ILE B 75 N ALA B 10 SHEET 5 AA4 6 ASN B 99 LYS B 103 1 O TRP B 101 N VAL B 76 SHEET 6 AA4 6 ARG B 120 ILE B 122 1 O ARG B 120 N VAL B 102 SHEET 1 AA5 5 VAL B 141 ASP B 146 0 SHEET 2 AA5 5 TYR B 151 LEU B 157 -1 O ILE B 153 N ILE B 145 SHEET 3 AA5 5 CYS B 204 HIS B 210 -1 O LEU B 205 N LEU B 156 SHEET 4 AA5 5 THR B 179 HIS B 185 -1 N LEU B 181 O VAL B 206 SHEET 5 AA5 5 ASP B 188 LEU B 191 -1 O ASP B 188 N HIS B 185 SHEET 1 AA6 2 LYS B 165 SER B 166 0 SHEET 2 AA6 2 ILE B 198 ILE B 199 -1 O ILE B 199 N LYS B 165 LINK OE2 GLU A 125 MG MG A 603 1555 1555 2.24 LINK O2G ATP A 601 MG MG A 603 1555 1555 2.50 LINK O2G ATP A 602 MG MG A 603 1555 1555 2.47 LINK MG MG A 603 O HOH A 701 1555 1555 2.13 LINK MG MG A 603 O HOH A 702 1555 1555 2.11 LINK MG MG A 603 OE2 GLU B 125 1555 1555 2.26 SITE 1 AC1 21 GLY A 13 LEU A 14 GLY A 15 LYS A 16 SITE 2 AC1 21 PHE A 17 ASP A 36 ILE A 37 LYS A 41 SITE 3 AC1 21 ALA A 55 ASN A 56 ALA A 57 ILE A 78 SITE 4 AC1 21 GLY A 79 ALA A 80 LYS A 103 GLN A 105 SITE 5 AC1 21 GLU A 125 MG A 603 HOH A 701 HOH A 702 SITE 6 AC1 21 GLU B 125 SITE 1 AC2 20 GLU A 125 MG A 603 HOH A 702 GLY B 13 SITE 2 AC2 20 LEU B 14 GLY B 15 LYS B 16 PHE B 17 SITE 3 AC2 20 ASP B 36 ILE B 37 LYS B 41 ALA B 55 SITE 4 AC2 20 ASN B 56 ALA B 57 ALA B 77 GLY B 79 SITE 5 AC2 20 ALA B 80 LYS B 103 GLN B 105 GLU B 125 SITE 1 AC3 6 GLU A 125 ATP A 601 ATP A 602 HOH A 701 SITE 2 AC3 6 HOH A 702 GLU B 125 CRYST1 123.276 123.276 84.451 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008112 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011841 0.00000