HEADER VIRAL PROTEIN 21-JUN-19 6S2L TITLE FMDV 3D POLYMERASE CRYSTALLIZED IN PRESENCE OF (F)URIDYLYLATED VPG TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENOME POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.22.46,3.6.1.15,3.4.22.28,2.7.7.48; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS (ISOLATE - SOURCE 3 /SPAIN/S8C1SANTAPAU/1970 SEROTYPE C); SOURCE 4 ORGANISM_COMMON: FMDV; SOURCE 5 ORGANISM_TAXID: 12120; SOURCE 6 STRAIN: ISOLATE -/SPAIN/S8C1SANTAPAU/1970 SEROTYPE C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS RNA DEPENDENT RNA POLYMERASE 3D POLYMERASE VPG PICORNAVIRUS, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.VERDAGUER,C.FERRER-ORTA REVDAT 3 24-JAN-24 6S2L 1 REMARK REVDAT 2 10-JUL-19 6S2L 1 JRNL REVDAT 1 03-JUL-19 6S2L 0 JRNL AUTH S.DE CASTRO,C.FERRER-ORTA,A.MILLS,G.FERNANDEZ-CURESES, JRNL AUTH 2 F.GAGO,N.VERDAGUER,M.J.CAMARASA JRNL TITL (F)URIDYLYLATED PEPTIDES LINKED TO VPG1 OF FOOT-AND- MOUTH JRNL TITL 2 DISEASE VIRUS (FMDV): DESIGN, SYNTHESIS AND X-RAY JRNL TITL 3 CRYSTALLOGRAPHY OF THE COMPLEXES WITH FMDV RNA-DEPENDENT RNA JRNL TITL 4 POLYMERASE. JRNL REF MOLECULES V. 24 2019 JRNL REFN ESSN 1420-3049 JRNL PMID 31247979 JRNL DOI 10.3390/MOLECULES24132360 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 23429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1257 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3742 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.01000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 2.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.328 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.187 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3848 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3530 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5209 ; 1.243 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8165 ; 1.188 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 6.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;32.540 ;21.683 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;16.285 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;16.144 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 492 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4343 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 850 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1903 ; 1.164 ; 3.628 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1902 ; 1.164 ; 3.627 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2377 ; 2.056 ; 5.439 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2378 ; 2.055 ; 5.440 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1945 ; 1.103 ; 3.768 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1946 ; 1.103 ; 3.770 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2833 ; 1.927 ; 5.583 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4167 ; 4.290 ;41.441 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4168 ; 4.289 ;41.452 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 476 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3134 25.5544 30.9492 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.0982 REMARK 3 T33: 0.0136 T12: -0.0165 REMARK 3 T13: 0.0059 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.7070 L22: 0.4043 REMARK 3 L33: 0.4810 L12: -0.4958 REMARK 3 L13: 0.0879 L23: -0.0988 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: -0.0410 S13: -0.0501 REMARK 3 S21: -0.1484 S22: -0.0280 S23: 0.0089 REMARK 3 S31: -0.0211 S32: 0.0211 S33: -0.0730 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6S2L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1292103039. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97692 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24747 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 74.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.77700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 1U09 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 30% PEG 4K, REMARK 280 0.1M MES PH 6.0, 4 BUTYROLACTONE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.65500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.92500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.32750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.92500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.98250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.92500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.92500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.32750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.92500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.92500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.98250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.65500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 465 HIS A 481 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 11 93.10 71.10 REMARK 500 HIS A 14 89.71 -68.52 REMARK 500 GLU A 33 51.48 -93.66 REMARK 500 GLU A 286 -125.26 56.96 REMARK 500 CYS A 300 -69.37 -128.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 FMDV 3D POLYMERASE REMARK 900 RELATED ID: 2F8E RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN REMARK 900 COMPLEX WITH URIDYLYLATED VPG PROTEIN REMARK 900 RELATED ID: 2D7S RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN REMARK 900 COMPLEX WITH VPG PROTEIN DBREF 6S2L A 1 470 UNP P03311 POLG_FMDVS 1830 2299 SEQADV 6S2L ALA A 471 UNP P03311 EXPRESSION TAG SEQADV 6S2L ALA A 472 UNP P03311 EXPRESSION TAG SEQADV 6S2L ALA A 473 UNP P03311 EXPRESSION TAG SEQADV 6S2L LEU A 474 UNP P03311 EXPRESSION TAG SEQADV 6S2L GLU A 475 UNP P03311 EXPRESSION TAG SEQADV 6S2L HIS A 476 UNP P03311 EXPRESSION TAG SEQADV 6S2L HIS A 477 UNP P03311 EXPRESSION TAG SEQADV 6S2L HIS A 478 UNP P03311 EXPRESSION TAG SEQADV 6S2L HIS A 479 UNP P03311 EXPRESSION TAG SEQADV 6S2L HIS A 480 UNP P03311 EXPRESSION TAG SEQADV 6S2L HIS A 481 UNP P03311 EXPRESSION TAG SEQRES 1 A 481 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 A 481 HIS VAL MET ARG LYS THR LYS LEU ALA PRO THR VAL ALA SEQRES 3 A 481 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 A 481 SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 A 481 ASP GLU VAL ILE PHE SER LYS HIS LYS GLY ASP THR LYS SEQRES 6 A 481 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 A 481 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 A 481 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 A 481 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 A 481 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 A 481 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 A 481 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 A 481 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 A 481 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 A 481 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 A 481 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 A 481 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 A 481 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 A 481 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 A 481 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 A 481 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 A 481 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 A 481 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 A 481 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 A 481 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 A 481 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 A 481 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 A 481 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 A 481 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 A 481 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 A 481 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 A 481 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 A 481 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 A 481 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 A 481 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 A 481 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 A 481 ASP ALA ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 HOH *150(H2 O) HELIX 1 AA1 THR A 24 ASN A 31 1 8 HELIX 2 AA2 VAL A 51 ILE A 56 1 6 HELIX 3 AA3 SER A 67 GLY A 90 1 24 HELIX 4 AA4 SER A 97 GLY A 104 1 8 HELIX 5 AA5 ARG A 127 LEU A 131 1 5 HELIX 6 AA6 GLY A 140 LYS A 152 1 13 HELIX 7 AA7 MET A 170 ALA A 175 1 6 HELIX 8 AA8 PRO A 185 ASN A 206 1 22 HELIX 9 AA9 ASN A 218 ALA A 231 1 14 HELIX 10 AB1 CYS A 249 PHE A 261 1 13 HELIX 11 AB2 ARG A 262 GLY A 266 5 5 HELIX 12 AB3 PRO A 269 THR A 277 1 9 HELIX 13 AB4 CYS A 300 ALA A 302 5 3 HELIX 14 AB5 THR A 303 TYR A 323 1 21 HELIX 15 AB6 GLU A 327 TYR A 331 5 5 HELIX 16 AB7 ASP A 349 ALA A 352 5 4 HELIX 17 AB8 LEU A 353 SER A 359 1 7 HELIX 18 AB9 SER A 379 VAL A 383 5 5 HELIX 19 AC1 ALA A 404 SER A 413 1 10 HELIX 20 AC2 THR A 419 VAL A 432 1 14 HELIX 21 AC3 GLY A 435 GLU A 444 1 10 HELIX 22 AC4 PRO A 445 GLN A 447 5 3 HELIX 23 AC5 SER A 454 CYS A 467 1 14 HELIX 24 AC6 CYS A 467 LEU A 474 1 8 SHEET 1 AA1 4 LEU A 2 VAL A 13 0 SHEET 2 AA1 4 ASN A 280 GLU A 293 -1 O GLU A 293 N LEU A 2 SHEET 3 AA1 4 CYS A 159 LEU A 163 1 N CYS A 159 O GLU A 282 SHEET 4 AA1 4 ILE A 180 VAL A 183 -1 O VAL A 183 N GLN A 160 SHEET 1 AA2 2 LEU A 21 PRO A 23 0 SHEET 2 AA2 2 PHE A 414 ARG A 416 -1 O ALA A 415 N ALA A 22 SHEET 1 AA3 2 PHE A 34 PRO A 36 0 SHEET 2 AA3 2 ILE A 167 PRO A 169 -1 O ARG A 168 N GLY A 35 SHEET 1 AA4 2 ILE A 132 ASP A 133 0 SHEET 2 AA4 2 THR A 138 VAL A 139 -1 O THR A 138 N ASP A 133 SHEET 1 AA5 4 THR A 332 TYR A 336 0 SHEET 2 AA5 4 ASP A 339 SER A 344 -1 O ALA A 343 N THR A 332 SHEET 3 AA5 4 ASN A 235 TYR A 241 -1 N TRP A 237 O VAL A 342 SHEET 4 AA5 4 ILE A 364 PRO A 366 -1 O THR A 365 N ASP A 240 SHEET 1 AA6 2 ARG A 388 MET A 392 0 SHEET 2 AA6 2 TYR A 399 MET A 403 -1 O VAL A 402 N HIS A 389 CISPEP 1 LEU A 119 PRO A 120 0 -2.43 SITE 1 AC1 2 HIS A 322 HOH A 687 SITE 1 AC2 7 ARG A 84 PRO A 209 ASN A 312 LEU A 328 SITE 2 AC2 7 TYR A 331 THR A 332 MET A 333 SITE 1 AC3 6 MET A 111 GLU A 112 THR A 115 ARG A 128 SITE 2 AC3 6 ILE A 189 HOH A 717 CRYST1 93.850 93.850 121.310 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010655 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008243 0.00000