data_6S2O # _entry.id 6S2O # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.335 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6S2O WWPDB D_1292102995 EMDB EMD-10091 # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Granulovirus occlusion bodies by serial electron diffraction' _pdbx_database_related.db_id EMD-10091 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6S2O _pdbx_database_status.recvd_initial_deposition_date 2019-06-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Buecker, R.' 1 ? 'Mehrabi, P.' 2 ? 'Schulz, E.C.' 3 ? 'Hogan-Lamarre, P.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 11 _citation.language ? _citation.page_first 996 _citation.page_last 996 _citation.title 'Serial protein crystallography in an electron microscope.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-020-14793-0 _citation.pdbx_database_id_PubMed 32081905 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bucker, R.' 1 ? primary 'Hogan-Lamarre, P.' 2 ? primary 'Mehrabi, P.' 3 ? primary 'Schulz, E.C.' 4 ? primary 'Bultema, L.A.' 5 ? primary 'Gevorkov, Y.' 6 ? primary 'Brehm, W.' 7 ? primary 'Yefanov, O.' 8 ? primary 'Oberthur, D.' 9 ? primary 'Kassier, G.H.' 10 ? primary 'Dwayne Miller, R.J.' 11 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6S2O _cell.details ? _cell.formula_units_Z ? _cell.length_a 103.200 _cell.length_a_esd ? _cell.length_b 103.200 _cell.length_b_esd ? _cell.length_c 103.200 _cell.length_c_esd ? _cell.volume 1099104.768 _cell.volume_esd ? _cell.Z_PDB 24 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6S2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall 'I 2 2 3' _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Granulin 29378.559 1 ? ? ? ? 2 water nat water 18.015 90 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Matrix protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGYNKSLRYSRHDGTSCVIDNHHLKSLGAVLNDVRRKKDRIREAEYEPIIDIADQYMVTEDPFRGPGKNVRITLFKEIRR VHPDTMKLVCNWSGKEFLRETWTRFISEEFPITTDQEIMDLWFELQLRPMHPNRCYKFTMQYALGAHPDYVAHDVIRQQD PYYVGPNNIERINLSKKGFAFPLTCLQSVYNDNFERFFDDVLWPYFYRPLVYVGTTSAEIEEIMIEVSLLFKIKEFAPDV PLFTGPAY ; _entity_poly.pdbx_seq_one_letter_code_can ;MGYNKSLRYSRHDGTSCVIDNHHLKSLGAVLNDVRRKKDRIREAEYEPIIDIADQYMVTEDPFRGPGKNVRITLFKEIRR VHPDTMKLVCNWSGKEFLRETWTRFISEEFPITTDQEIMDLWFELQLRPMHPNRCYKFTMQYALGAHPDYVAHDVIRQQD PYYVGPNNIERINLSKKGFAFPLTCLQSVYNDNFERFFDDVLWPYFYRPLVYVGTTSAEIEEIMIEVSLLFKIKEFAPDV PLFTGPAY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 TYR n 1 4 ASN n 1 5 LYS n 1 6 SER n 1 7 LEU n 1 8 ARG n 1 9 TYR n 1 10 SER n 1 11 ARG n 1 12 HIS n 1 13 ASP n 1 14 GLY n 1 15 THR n 1 16 SER n 1 17 CYS n 1 18 VAL n 1 19 ILE n 1 20 ASP n 1 21 ASN n 1 22 HIS n 1 23 HIS n 1 24 LEU n 1 25 LYS n 1 26 SER n 1 27 LEU n 1 28 GLY n 1 29 ALA n 1 30 VAL n 1 31 LEU n 1 32 ASN n 1 33 ASP n 1 34 VAL n 1 35 ARG n 1 36 ARG n 1 37 LYS n 1 38 LYS n 1 39 ASP n 1 40 ARG n 1 41 ILE n 1 42 ARG n 1 43 GLU n 1 44 ALA n 1 45 GLU n 1 46 TYR n 1 47 GLU n 1 48 PRO n 1 49 ILE n 1 50 ILE n 1 51 ASP n 1 52 ILE n 1 53 ALA n 1 54 ASP n 1 55 GLN n 1 56 TYR n 1 57 MET n 1 58 VAL n 1 59 THR n 1 60 GLU n 1 61 ASP n 1 62 PRO n 1 63 PHE n 1 64 ARG n 1 65 GLY n 1 66 PRO n 1 67 GLY n 1 68 LYS n 1 69 ASN n 1 70 VAL n 1 71 ARG n 1 72 ILE n 1 73 THR n 1 74 LEU n 1 75 PHE n 1 76 LYS n 1 77 GLU n 1 78 ILE n 1 79 ARG n 1 80 ARG n 1 81 VAL n 1 82 HIS n 1 83 PRO n 1 84 ASP n 1 85 THR n 1 86 MET n 1 87 LYS n 1 88 LEU n 1 89 VAL n 1 90 CYS n 1 91 ASN n 1 92 TRP n 1 93 SER n 1 94 GLY n 1 95 LYS n 1 96 GLU n 1 97 PHE n 1 98 LEU n 1 99 ARG n 1 100 GLU n 1 101 THR n 1 102 TRP n 1 103 THR n 1 104 ARG n 1 105 PHE n 1 106 ILE n 1 107 SER n 1 108 GLU n 1 109 GLU n 1 110 PHE n 1 111 PRO n 1 112 ILE n 1 113 THR n 1 114 THR n 1 115 ASP n 1 116 GLN n 1 117 GLU n 1 118 ILE n 1 119 MET n 1 120 ASP n 1 121 LEU n 1 122 TRP n 1 123 PHE n 1 124 GLU n 1 125 LEU n 1 126 GLN n 1 127 LEU n 1 128 ARG n 1 129 PRO n 1 130 MET n 1 131 HIS n 1 132 PRO n 1 133 ASN n 1 134 ARG n 1 135 CYS n 1 136 TYR n 1 137 LYS n 1 138 PHE n 1 139 THR n 1 140 MET n 1 141 GLN n 1 142 TYR n 1 143 ALA n 1 144 LEU n 1 145 GLY n 1 146 ALA n 1 147 HIS n 1 148 PRO n 1 149 ASP n 1 150 TYR n 1 151 VAL n 1 152 ALA n 1 153 HIS n 1 154 ASP n 1 155 VAL n 1 156 ILE n 1 157 ARG n 1 158 GLN n 1 159 GLN n 1 160 ASP n 1 161 PRO n 1 162 TYR n 1 163 TYR n 1 164 VAL n 1 165 GLY n 1 166 PRO n 1 167 ASN n 1 168 ASN n 1 169 ILE n 1 170 GLU n 1 171 ARG n 1 172 ILE n 1 173 ASN n 1 174 LEU n 1 175 SER n 1 176 LYS n 1 177 LYS n 1 178 GLY n 1 179 PHE n 1 180 ALA n 1 181 PHE n 1 182 PRO n 1 183 LEU n 1 184 THR n 1 185 CYS n 1 186 LEU n 1 187 GLN n 1 188 SER n 1 189 VAL n 1 190 TYR n 1 191 ASN n 1 192 ASP n 1 193 ASN n 1 194 PHE n 1 195 GLU n 1 196 ARG n 1 197 PHE n 1 198 PHE n 1 199 ASP n 1 200 ASP n 1 201 VAL n 1 202 LEU n 1 203 TRP n 1 204 PRO n 1 205 TYR n 1 206 PHE n 1 207 TYR n 1 208 ARG n 1 209 PRO n 1 210 LEU n 1 211 VAL n 1 212 TYR n 1 213 VAL n 1 214 GLY n 1 215 THR n 1 216 THR n 1 217 SER n 1 218 ALA n 1 219 GLU n 1 220 ILE n 1 221 GLU n 1 222 GLU n 1 223 ILE n 1 224 MET n 1 225 ILE n 1 226 GLU n 1 227 VAL n 1 228 SER n 1 229 LEU n 1 230 LEU n 1 231 PHE n 1 232 LYS n 1 233 ILE n 1 234 LYS n 1 235 GLU n 1 236 PHE n 1 237 ALA n 1 238 PRO n 1 239 ASP n 1 240 VAL n 1 241 PRO n 1 242 LEU n 1 243 PHE n 1 244 THR n 1 245 GLY n 1 246 PRO n 1 247 ALA n 1 248 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 248 _entity_src_gen.gene_src_common_name CpGV _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'isolate Mexico/1963' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Cydia pomonella granulosis virus (isolate Mexico/1963)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 654905 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cydia pomonella granulosis virus (isolate Mexican)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 654905 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GRAN_GVCPM _struct_ref.pdbx_db_accession P87577 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGYNKSLRYSRHDGTSCVIDNHHLKSLGAVLNDVRRKKDRIREAEYEPIIDIADQYMVTEDPFRGPGKNVRITLFKEIRR VHPDTMKLVCNWSGKEFLRETWTRFISEEFPITTDQEIMDLWFELQLRPMHPNRCYKFTMQYALGAHPDYVAHDVIRQQD PYYVGPNNIERINLSKKGFAFPLTCLQSVYNDNFERFFDDVLWPYFYRPLVYVGTTSAEIEEIMIEVSLLFKIKEFAPDV PLFTGPAY ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6S2O _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 248 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P87577 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 248 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 248 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6S2O _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _reflns.B_iso_Wilson_estimate 16.07 _reflns.entry_id 6S2O _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high ? _reflns.d_resolution_low ? _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs ? _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs ? _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI ? _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 19.29 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6S2O _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.55 _refine.ls_d_res_low 72.97 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 26635 _refine.ls_number_reflns_R_free 1297 _refine.ls_number_reflns_R_work 25338 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.95 _refine.ls_percent_reflns_R_free 4.87 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1718 _refine.ls_R_factor_R_free 0.1965 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1705 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.1215 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1976 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON CRYSTALLOGRAPHY' ? 0.0116 ? 2099 ? f_bond_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 1.1313 ? 2854 ? f_angle_d ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.0767 ? 300 ? f_chiral_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 0.0072 ? 373 ? f_plane_restr ? ? 'ELECTRON CRYSTALLOGRAPHY' ? 6.1208 ? 278 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'ELECTRON CRYSTALLOGRAPHY' 1.55 1.61 . . 161 2770 99.59 . . . 0.3601 . 0.3242 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.61 1.69 . . 138 2783 99.97 . . . 0.3084 . 0.2844 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.69 1.77 . . 134 2800 100.00 . . . 0.2832 . 0.2365 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.77 1.89 . . 163 2770 100.00 . . . 0.2740 . 0.2134 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 1.89 2.03 . . 174 2790 100.00 . . . 0.2051 . 0.1754 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.03 2.24 . . 117 2817 99.97 . . . 0.2206 . 0.1661 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.24 2.56 . . 119 2844 100.00 . . . 0.1908 . 0.1696 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 2.56 3.22 . . 129 2858 100.00 . . . 0.1883 . 0.1556 . . . . . . . . . . . 'ELECTRON CRYSTALLOGRAPHY' 3.23 72.97 . . 162 2906 100.00 . . . 0.1383 . 0.1282 . . . . . . . . . . . # _struct.entry_id 6S2O _struct.title 'Granulovirus occlusion bodies by serial electron diffraction' _struct.pdbx_descriptor Granulin _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6S2O _struct_keywords.text 'granulovirus, occlusion body, serial crystallography, viral protein' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 26 ? ASP A 54 ? SER A 26 ASP A 54 1 ? 29 HELX_P HELX_P2 AA2 SER A 93 ? PHE A 110 ? SER A 93 PHE A 110 1 ? 18 HELX_P HELX_P3 AA3 ASN A 193 ? ASP A 200 ? ASN A 193 ASP A 200 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id disulf1 _struct_conn.conn_type_id disulf _struct_conn.pdbx_leaving_atom_flag ? _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 135 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 135 _struct_conn.ptnr2_label_atom_id SG _struct_conn.pdbx_ptnr2_label_alt_id A _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 135 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 135 _struct_conn.ptnr2_symmetry 2_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 2.245 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PHE 110 A . ? PHE 110 A PRO 111 A ? PRO 111 A 1 -2.45 2 GLY 245 A . ? GLY 245 A PRO 246 A ? PRO 246 A 1 -3.97 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 4 ? AA3 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 16 ? ILE A 19 ? SER A 16 ILE A 19 AA1 2 HIS A 22 ? LYS A 25 ? HIS A 22 LYS A 25 AA2 1 LYS A 68 ? VAL A 81 ? LYS A 68 VAL A 81 AA2 2 GLU A 221 ? PHE A 236 ? GLU A 221 PHE A 236 AA2 3 ASP A 115 ? PRO A 129 ? ASP A 115 PRO A 129 AA2 4 ILE A 169 ? LEU A 174 ? ILE A 169 LEU A 174 AA3 1 VAL A 155 ? ARG A 157 ? VAL A 155 ARG A 157 AA3 2 THR A 85 ? LEU A 88 ? THR A 85 LEU A 88 AA3 3 TYR A 207 ? THR A 215 ? TYR A 207 THR A 215 AA3 4 PHE A 138 ? GLY A 145 ? PHE A 138 GLY A 145 AA3 5 TYR A 162 ? TYR A 163 ? TYR A 162 TYR A 163 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N CYS A 17 ? N CYS A 17 O LEU A 24 ? O LEU A 24 AA2 1 2 N ILE A 72 ? N ILE A 72 O LEU A 229 ? O LEU A 229 AA2 2 3 O SER A 228 ? O SER A 228 N GLU A 124 ? N GLU A 124 AA2 3 4 N LEU A 121 ? N LEU A 121 O LEU A 174 ? O LEU A 174 AA3 1 2 O ILE A 156 ? O ILE A 156 N MET A 86 ? N MET A 86 AA3 2 3 N LYS A 87 ? N LYS A 87 O VAL A 213 ? O VAL A 213 AA3 3 4 O TYR A 212 ? O TYR A 212 N GLN A 141 ? N GLN A 141 AA3 4 5 N MET A 140 ? N MET A 140 O TYR A 162 ? O TYR A 162 # _atom_sites.entry_id 6S2O _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.009690 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009690 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009690 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLY 2 2 ? ? ? A . n A 1 3 TYR 3 3 ? ? ? A . n A 1 4 ASN 4 4 ? ? ? A . n A 1 5 LYS 5 5 ? ? ? A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 TYR 9 9 9 TYR TYR A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 HIS 12 12 12 HIS HIS A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 THR 15 15 15 THR THR A . n A 1 16 SER 16 16 16 SER SER A . n A 1 17 CYS 17 17 17 CYS CYS A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 HIS 23 23 23 HIS HIS A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 ILE 41 41 41 ILE ILE A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 GLU 43 43 43 GLU GLU A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 GLU 45 45 45 GLU GLU A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ILE 52 52 52 ILE ILE A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 GLN 55 55 55 GLN GLN A . n A 1 56 TYR 56 56 56 TYR TYR A . n A 1 57 MET 57 57 57 MET MET A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 THR 59 59 59 THR THR A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 PRO 62 62 62 PRO PRO A . n A 1 63 PHE 63 63 63 PHE PHE A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ASN 69 69 69 ASN ASN A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 PHE 75 75 75 PHE PHE A . n A 1 76 LYS 76 76 76 LYS LYS A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 ARG 80 80 80 ARG ARG A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 HIS 82 82 82 HIS HIS A . n A 1 83 PRO 83 83 83 PRO PRO A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 CYS 90 90 90 CYS CYS A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 TRP 92 92 92 TRP TRP A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 PHE 97 97 97 PHE PHE A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 THR 101 101 101 THR THR A . n A 1 102 TRP 102 102 102 TRP TRP A . n A 1 103 THR 103 103 103 THR THR A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 PHE 110 110 110 PHE PHE A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 ILE 112 112 112 ILE ILE A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 MET 119 119 119 MET MET A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 TRP 122 122 122 TRP TRP A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 GLN 126 126 126 GLN GLN A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 MET 130 130 130 MET MET A . n A 1 131 HIS 131 131 131 HIS HIS A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 CYS 135 135 135 CYS CYS A . n A 1 136 TYR 136 136 136 TYR TYR A . n A 1 137 LYS 137 137 137 LYS LYS A . n A 1 138 PHE 138 138 138 PHE PHE A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 MET 140 140 140 MET MET A . n A 1 141 GLN 141 141 141 GLN GLN A . n A 1 142 TYR 142 142 142 TYR TYR A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 GLY 145 145 145 GLY GLY A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 HIS 147 147 147 HIS HIS A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 ASP 149 149 149 ASP ASP A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 VAL 151 151 151 VAL VAL A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 HIS 153 153 153 HIS HIS A . n A 1 154 ASP 154 154 154 ASP ASP A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 ARG 157 157 157 ARG ARG A . n A 1 158 GLN 158 158 158 GLN GLN A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 ASP 160 160 160 ASP ASP A . n A 1 161 PRO 161 161 161 PRO PRO A . n A 1 162 TYR 162 162 162 TYR TYR A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 VAL 164 164 164 VAL VAL A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 PRO 166 166 166 PRO PRO A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 ASN 168 168 168 ASN ASN A . n A 1 169 ILE 169 169 169 ILE ILE A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ASN 173 173 173 ASN ASN A . n A 1 174 LEU 174 174 174 LEU LEU A . n A 1 175 SER 175 175 175 SER SER A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 GLY 178 178 178 GLY GLY A . n A 1 179 PHE 179 179 179 PHE PHE A . n A 1 180 ALA 180 180 180 ALA ALA A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 LEU 183 183 183 LEU LEU A . n A 1 184 THR 184 184 184 THR THR A . n A 1 185 CYS 185 185 185 CYS CYS A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 GLN 187 187 187 GLN GLN A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 VAL 189 189 189 VAL VAL A . n A 1 190 TYR 190 190 190 TYR TYR A . n A 1 191 ASN 191 191 191 ASN ASN A . n A 1 192 ASP 192 192 192 ASP ASP A . n A 1 193 ASN 193 193 193 ASN ASN A . n A 1 194 PHE 194 194 194 PHE PHE A . n A 1 195 GLU 195 195 195 GLU GLU A . n A 1 196 ARG 196 196 196 ARG ARG A . n A 1 197 PHE 197 197 197 PHE PHE A . n A 1 198 PHE 198 198 198 PHE PHE A . n A 1 199 ASP 199 199 199 ASP ASP A . n A 1 200 ASP 200 200 200 ASP ASP A . n A 1 201 VAL 201 201 201 VAL VAL A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 TRP 203 203 203 TRP TRP A . n A 1 204 PRO 204 204 204 PRO PRO A . n A 1 205 TYR 205 205 205 TYR TYR A . n A 1 206 PHE 206 206 206 PHE PHE A . n A 1 207 TYR 207 207 207 TYR TYR A . n A 1 208 ARG 208 208 208 ARG ARG A . n A 1 209 PRO 209 209 209 PRO PRO A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 VAL 211 211 211 VAL VAL A . n A 1 212 TYR 212 212 212 TYR TYR A . n A 1 213 VAL 213 213 213 VAL VAL A . n A 1 214 GLY 214 214 214 GLY GLY A . n A 1 215 THR 215 215 215 THR THR A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 SER 217 217 217 SER SER A . n A 1 218 ALA 218 218 218 ALA ALA A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 ILE 220 220 220 ILE ILE A . n A 1 221 GLU 221 221 221 GLU GLU A . n A 1 222 GLU 222 222 222 GLU GLU A . n A 1 223 ILE 223 223 223 ILE ILE A . n A 1 224 MET 224 224 224 MET MET A . n A 1 225 ILE 225 225 225 ILE ILE A . n A 1 226 GLU 226 226 226 GLU GLU A . n A 1 227 VAL 227 227 227 VAL VAL A . n A 1 228 SER 228 228 228 SER SER A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 LEU 230 230 230 LEU LEU A . n A 1 231 PHE 231 231 231 PHE PHE A . n A 1 232 LYS 232 232 232 LYS LYS A . n A 1 233 ILE 233 233 233 ILE ILE A . n A 1 234 LYS 234 234 234 LYS LYS A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 PHE 236 236 236 PHE PHE A . n A 1 237 ALA 237 237 237 ALA ALA A . n A 1 238 PRO 238 238 238 PRO PRO A . n A 1 239 ASP 239 239 239 ASP ASP A . n A 1 240 VAL 240 240 240 VAL VAL A . n A 1 241 PRO 241 241 241 PRO PRO A . n A 1 242 LEU 242 242 242 LEU LEU A . n A 1 243 PHE 243 243 243 PHE PHE A . n A 1 244 THR 244 244 244 THR THR A . n A 1 245 GLY 245 245 245 GLY GLY A . n A 1 246 PRO 246 246 246 PRO PRO A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 TYR 248 248 248 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 301 75 HOH HOH A . B 2 HOH 2 302 63 HOH HOH A . B 2 HOH 3 303 39 HOH HOH A . B 2 HOH 4 304 11 HOH HOH A . B 2 HOH 5 305 85 HOH HOH A . B 2 HOH 6 306 41 HOH HOH A . B 2 HOH 7 307 70 HOH HOH A . B 2 HOH 8 308 77 HOH HOH A . B 2 HOH 9 309 35 HOH HOH A . B 2 HOH 10 310 5 HOH HOH A . B 2 HOH 11 311 82 HOH HOH A . B 2 HOH 12 312 38 HOH HOH A . B 2 HOH 13 313 88 HOH HOH A . B 2 HOH 14 314 76 HOH HOH A . B 2 HOH 15 315 26 HOH HOH A . B 2 HOH 16 316 29 HOH HOH A . B 2 HOH 17 317 40 HOH HOH A . B 2 HOH 18 318 57 HOH HOH A . B 2 HOH 19 319 6 HOH HOH A . B 2 HOH 20 320 64 HOH HOH A . B 2 HOH 21 321 25 HOH HOH A . B 2 HOH 22 322 37 HOH HOH A . B 2 HOH 23 323 23 HOH HOH A . B 2 HOH 24 324 48 HOH HOH A . B 2 HOH 25 325 53 HOH HOH A . B 2 HOH 26 326 87 HOH HOH A . B 2 HOH 27 327 42 HOH HOH A . B 2 HOH 28 328 22 HOH HOH A . B 2 HOH 29 329 73 HOH HOH A . B 2 HOH 30 330 33 HOH HOH A . B 2 HOH 31 331 2 HOH HOH A . B 2 HOH 32 332 81 HOH HOH A . B 2 HOH 33 333 60 HOH HOH A . B 2 HOH 34 334 71 HOH HOH A . B 2 HOH 35 335 10 HOH HOH A . B 2 HOH 36 336 80 HOH HOH A . B 2 HOH 37 337 7 HOH HOH A . B 2 HOH 38 338 14 HOH HOH A . B 2 HOH 39 339 1 HOH HOH A . B 2 HOH 40 340 20 HOH HOH A . B 2 HOH 41 341 65 HOH HOH A . B 2 HOH 42 342 16 HOH HOH A . B 2 HOH 43 343 56 HOH HOH A . B 2 HOH 44 344 30 HOH HOH A . B 2 HOH 45 345 27 HOH HOH A . B 2 HOH 46 346 15 HOH HOH A . B 2 HOH 47 347 67 HOH HOH A . B 2 HOH 48 348 12 HOH HOH A . B 2 HOH 49 349 55 HOH HOH A . B 2 HOH 50 350 4 HOH HOH A . B 2 HOH 51 351 95 HOH HOH A . B 2 HOH 52 352 31 HOH HOH A . B 2 HOH 53 353 59 HOH HOH A . B 2 HOH 54 354 94 HOH HOH A . B 2 HOH 55 355 79 HOH HOH A . B 2 HOH 56 356 96 HOH HOH A . B 2 HOH 57 357 9 HOH HOH A . B 2 HOH 58 358 17 HOH HOH A . B 2 HOH 59 359 36 HOH HOH A . B 2 HOH 60 360 93 HOH HOH A . B 2 HOH 61 361 54 HOH HOH A . B 2 HOH 62 362 72 HOH HOH A . B 2 HOH 63 363 8 HOH HOH A . B 2 HOH 64 364 68 HOH HOH A . B 2 HOH 65 365 43 HOH HOH A . B 2 HOH 66 366 19 HOH HOH A . B 2 HOH 67 367 3 HOH HOH A . B 2 HOH 68 368 44 HOH HOH A . B 2 HOH 69 369 34 HOH HOH A . B 2 HOH 70 370 61 HOH HOH A . B 2 HOH 71 371 32 HOH HOH A . B 2 HOH 72 372 24 HOH HOH A . B 2 HOH 73 373 50 HOH HOH A . B 2 HOH 74 374 21 HOH HOH A . B 2 HOH 75 375 13 HOH HOH A . B 2 HOH 76 376 62 HOH HOH A . B 2 HOH 77 377 49 HOH HOH A . B 2 HOH 78 378 83 HOH HOH A . B 2 HOH 79 379 51 HOH HOH A . B 2 HOH 80 380 66 HOH HOH A . B 2 HOH 81 381 58 HOH HOH A . B 2 HOH 82 382 46 HOH HOH A . B 2 HOH 83 383 18 HOH HOH A . B 2 HOH 84 384 74 HOH HOH A . B 2 HOH 85 385 69 HOH HOH A . B 2 HOH 86 386 52 HOH HOH A . B 2 HOH 87 387 92 HOH HOH A . B 2 HOH 88 388 47 HOH HOH A . B 2 HOH 89 389 45 HOH HOH A . B 2 HOH 90 390 28 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 74910 ? 1 MORE -442 ? 1 'SSA (A^2)' 126610 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 6 'crystal symmetry operation' 6_555 z,-x,-y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 7 'crystal symmetry operation' 7_555 -z,-x,y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 8 'crystal symmetry operation' 8_555 -z,x,-y 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 9 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 10 'crystal symmetry operation' 10_555 -y,z,-x 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 11 'crystal symmetry operation' 11_555 y,-z,-x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 12 'crystal symmetry operation' 12_555 -y,-z,x 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-04-29 2 'Structure model' 1 1 2020-11-11 3 'Structure model' 1 2 2020-11-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.pdbx_database_id_DOI' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 3 'Structure model' '_citation.journal_volume' 9 3 'Structure model' '_citation.page_first' 10 3 'Structure model' '_citation.page_last' 11 3 'Structure model' '_citation.pdbx_database_id_PubMed' 12 3 'Structure model' '_citation.title' 13 3 'Structure model' '_citation_author.name' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? phenix.refine ? ? ? 1.17_3644 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.17_3644 2 # _em_3d_fitting.entry_id 6S2O _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.ref_space ? _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.id 1 _em_3d_fitting_list.details ? _em_3d_fitting_list.pdb_chain_id A _em_3d_fitting_list.pdb_chain_residue_range 6-248 _em_3d_fitting_list.pdb_entry_id 5G0Z # _em_3d_reconstruction.entry_id 6S2O _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution 1.6 _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Cydia pomonella granulosis virus (isolate Mexican)' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 6S2O _em_image_scans.id 1 _em_image_scans.dimension_height 512 _em_image_scans.dimension_width 1536 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size 50 _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 6S2O _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure OTHER _em_imaging.c2_aperture_diameter 5 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode OTHER _em_imaging.microscope_model 'FEI TECNAI F20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum 100 _em_imaging.recording_temperature_minimum 93 _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material ? _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type ? _em_sample_support.method ? _em_sample_support.film_material ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate OTHER _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 6S2O _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 6S2O _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 10 ? ? 58.58 -123.25 2 1 ASN A 21 ? ? 77.98 -14.87 3 1 CYS A 185 ? ? -110.68 -161.51 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 176 ? CG ? A LYS 176 CG 2 1 Y 1 A LYS 176 ? CD ? A LYS 176 CD 3 1 Y 1 A LYS 176 ? CE ? A LYS 176 CE 4 1 Y 1 A LYS 176 ? NZ ? A LYS 176 NZ 5 1 Y 1 A LYS 177 ? CG ? A LYS 177 CG 6 1 Y 1 A LYS 177 ? CD ? A LYS 177 CD 7 1 Y 1 A LYS 177 ? CE ? A LYS 177 CE 8 1 Y 1 A LYS 177 ? NZ ? A LYS 177 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLY 2 ? A GLY 2 3 1 Y 1 A TYR 3 ? A TYR 3 4 1 Y 1 A ASN 4 ? A ASN 4 5 1 Y 1 A LYS 5 ? A LYS 5 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 103.2 _em_3d_crystal_entity.length_b 103.2 _em_3d_crystal_entity.length_c 103.2 _em_3d_crystal_entity.space_group_name I23 _em_3d_crystal_entity.space_group_num 197 # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details 'Data reduction and structure solution using X-ray crystallography codes (CrystFEL, Phaser, cctbx.xfel, Coot)' # _em_diffraction.id 1 _em_diffraction.camera_length 2580 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list 0 # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 1 _em_diffraction_shell.high_resolution 10 _em_diffraction_shell.low_resolution 1.55 _em_diffraction_shell.multiplicity 1 _em_diffraction_shell.num_structure_factors 1 _em_diffraction_shell.phase_residual 1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details ? _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 100 _em_diffraction_stats.high_resolution 1.6 _em_diffraction_stats.num_intensities_measured 9650574 _em_diffraction_stats.num_structure_factors 23422 _em_diffraction_stats.overall_phase_error 13.64 _em_diffraction_stats.overall_phase_residual 1 _em_diffraction_stats.phase_error_rejection_criteria 0 _em_diffraction_stats.r_merge 0.093 _em_diffraction_stats.r_sym 0.093 # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 654905 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Cydia pomonella granulosis virus (isolate Mexican)' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 4.7 _em_image_recording.average_exposure_time 0.01 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model OTHER _em_image_recording.num_diffraction_images 32000 _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' 'custom software' ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot 0.8.9.2 ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? PHENIX 1.17 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? ? ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' CrystFEL ? ? 1 ? ? 12 RECONSTRUCTION ? Coot ? 1 ? ? 13 'MODEL REFINEMENT' ? PHENIX 1.17 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #