HEADER STRUCTURAL PROTEIN 02-JUL-19 6S5X TITLE STRUCTURE OF RIBR, THE MOST N-TERMINAL RIB DOMAIN FROM GROUP B TITLE 2 STREPTOCOCCUS SPECIES STREPTOCOCCUS AGALACTIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP B STREPTOCOCCAL R4 SURFACE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SURFACE PROTEIN RIB; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: 3C PROTEASE-CLEAVED RIB (RESIDUES 230-308; RIBR) FROM COMPND 7 STREPTOCOCCUS AGALACTIAE RIB, EXPRESSED AND PURIFIED AS A N-HIS-GST- COMPND 8 3C FUSION IN E. COLI BL21 (DE3) CELLS SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: RIB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS RIB DOMAIN, BACTERIAL CELL SURFACE, IMMUNOGLOBULIN FOLD, PROFILE-HMM, KEYWDS 2 DOMAIN ATROPHY, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.WHELAN,J.P.TURKENBURG,S.C.GRIFFITHS,A.BATEMAN,J.R.POTTS REVDAT 4 19-JUN-24 6S5X 1 REMARK REVDAT 3 21-DEC-22 6S5X 1 JRNL LINK REVDAT 2 18-DEC-19 6S5X 1 JRNL REVDAT 1 11-DEC-19 6S5X 0 JRNL AUTH F.WHELAN,A.LAFITA,S.C.GRIFFITHS,R.E.M.COOPER, JRNL AUTH 2 J.L.WHITTINGHAM,J.P.TURKENBURG,I.W.MANFIELD,A.N.ST JOHN, JRNL AUTH 3 E.PACI,A.BATEMAN,J.R.POTTS JRNL TITL DEFINING THE REMARKABLE STRUCTURAL MALLEABILITY OF A JRNL TITL 2 BACTERIAL SURFACE PROTEIN RIB DOMAIN IMPLICATED IN JRNL TITL 3 INFECTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 26540 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31818940 JRNL DOI 10.1073/PNAS.1911776116 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 981 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3222 - 3.2517 0.99 2934 148 0.1517 0.1589 REMARK 3 2 3.2517 - 2.5810 1.00 2783 129 0.1559 0.1802 REMARK 3 3 2.5810 - 2.2548 1.00 2750 124 0.1515 0.2057 REMARK 3 4 2.2548 - 2.0486 1.00 2685 151 0.1434 0.2045 REMARK 3 5 2.0486 - 1.9018 1.00 2704 127 0.1543 0.1763 REMARK 3 6 1.9018 - 1.7896 1.00 2655 163 0.1934 0.2469 REMARK 3 7 1.7896 - 1.7000 1.00 2664 139 0.2238 0.2606 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1272 REMARK 3 ANGLE : 1.056 1757 REMARK 3 CHIRALITY : 0.065 209 REMARK 3 PLANARITY : 0.008 244 REMARK 3 DIHEDRAL : 11.438 800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5490 3.5840 46.8152 REMARK 3 T TENSOR REMARK 3 T11: 0.0761 T22: 0.1762 REMARK 3 T33: 0.1129 T12: 0.0025 REMARK 3 T13: 0.0023 T23: 0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.0350 L22: 1.5556 REMARK 3 L33: 6.4062 L12: 0.1713 REMARK 3 L13: -0.4181 L23: -3.0625 REMARK 3 S TENSOR REMARK 3 S11: 0.2347 S12: -0.0518 S13: 0.0420 REMARK 3 S21: 0.1680 S22: 0.1197 S23: 0.3030 REMARK 3 S31: -0.2858 S32: -0.4338 S33: -0.1103 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6083 10.0060 20.3511 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.1247 REMARK 3 T33: 0.1008 T12: 0.0367 REMARK 3 T13: 0.0226 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.5160 L22: -0.0308 REMARK 3 L33: 2.4455 L12: -0.1668 REMARK 3 L13: -1.0777 L23: 0.0437 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.1425 S13: 0.0206 REMARK 3 S21: -0.0663 S22: -0.0422 S23: -0.0026 REMARK 3 S31: -0.1515 S32: -0.3503 S33: -0.0425 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.9531 11.1039 31.9194 REMARK 3 T TENSOR REMARK 3 T11: 0.0663 T22: 0.1076 REMARK 3 T33: 0.1156 T12: 0.0174 REMARK 3 T13: 0.0054 T23: -0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.5439 L22: 0.2657 REMARK 3 L33: 1.3034 L12: -0.0586 REMARK 3 L13: 0.4379 L23: -0.0400 REMARK 3 S TENSOR REMARK 3 S11: -0.0478 S12: -0.1009 S13: 0.0984 REMARK 3 S21: -0.1026 S22: 0.0902 S23: -0.1546 REMARK 3 S31: -0.1446 S32: -0.0683 S33: 0.0088 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 270 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0237 1.0342 14.1024 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.1001 REMARK 3 T33: 0.0881 T12: -0.0064 REMARK 3 T13: 0.0291 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.6106 L22: 0.9607 REMARK 3 L33: 3.5657 L12: -0.6582 REMARK 3 L13: 0.9710 L23: -0.6123 REMARK 3 S TENSOR REMARK 3 S11: 0.0701 S12: 0.1127 S13: -0.2415 REMARK 3 S21: -0.1138 S22: -0.1350 S23: 0.1343 REMARK 3 S31: 0.3413 S32: -0.3545 S33: -0.1110 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8138 2.5247 22.8323 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1165 REMARK 3 T33: 0.0861 T12: 0.0066 REMARK 3 T13: 0.0095 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 2.3700 L22: 0.5009 REMARK 3 L33: 2.9475 L12: 0.5244 REMARK 3 L13: 2.5642 L23: 0.5846 REMARK 3 S TENSOR REMARK 3 S11: 0.1152 S12: 0.1056 S13: -0.1391 REMARK 3 S21: -0.0564 S22: 0.0475 S23: 0.0582 REMARK 3 S31: 0.2165 S32: -0.0689 S33: -0.0762 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2375 4.9480 25.6159 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.1381 REMARK 3 T33: 0.0896 T12: 0.0099 REMARK 3 T13: 0.0047 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.7347 L22: 0.4386 REMARK 3 L33: 3.8683 L12: -0.1549 REMARK 3 L13: 0.5823 L23: -0.5847 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.0110 S13: -0.0213 REMARK 3 S21: -0.0886 S22: -0.0746 S23: -0.0420 REMARK 3 S31: 0.2332 S32: -0.3600 S33: -0.0262 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 225 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1904 -4.4605 11.4482 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.1250 REMARK 3 T33: 0.1147 T12: -0.0156 REMARK 3 T13: 0.0084 T23: -0.0387 REMARK 3 L TENSOR REMARK 3 L11: 0.6121 L22: 1.0209 REMARK 3 L33: 4.7417 L12: 0.7779 REMARK 3 L13: 1.6985 L23: 2.1574 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: 0.0907 S13: -0.0126 REMARK 3 S21: -0.2161 S22: 0.3126 S23: -0.3456 REMARK 3 S31: -0.2265 S32: 0.4869 S33: -0.1292 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3793 -0.8976 28.1663 REMARK 3 T TENSOR REMARK 3 T11: 0.0855 T22: 0.1560 REMARK 3 T33: 0.1021 T12: 0.0434 REMARK 3 T13: -0.0222 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 0.5569 L22: 0.1673 REMARK 3 L33: 2.0688 L12: 0.2410 REMARK 3 L13: 0.9485 L23: 0.2941 REMARK 3 S TENSOR REMARK 3 S11: 0.1494 S12: -0.0670 S13: -0.1629 REMARK 3 S21: 0.0280 S22: 0.2557 S23: -0.0741 REMARK 3 S31: 0.0090 S32: 0.6399 S33: -0.0373 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 241 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9469 5.5106 36.3585 REMARK 3 T TENSOR REMARK 3 T11: 0.0632 T22: 0.0596 REMARK 3 T33: 0.0921 T12: 0.0036 REMARK 3 T13: 0.0117 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.6528 L22: 0.0812 REMARK 3 L33: 2.0098 L12: 0.2198 REMARK 3 L13: -0.8508 L23: 0.1873 REMARK 3 S TENSOR REMARK 3 S11: 0.0378 S12: 0.0541 S13: 0.0560 REMARK 3 S21: 0.0110 S22: -0.0002 S23: -0.0745 REMARK 3 S31: -0.2157 S32: -0.0600 S33: -0.0243 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 261 THROUGH 293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2883 -0.6089 31.7640 REMARK 3 T TENSOR REMARK 3 T11: 0.0753 T22: 0.0570 REMARK 3 T33: 0.0835 T12: -0.0038 REMARK 3 T13: -0.0056 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1669 L22: 0.0774 REMARK 3 L33: 2.5436 L12: 0.0540 REMARK 3 L13: 0.2129 L23: 0.0792 REMARK 3 S TENSOR REMARK 3 S11: 0.0099 S12: -0.0020 S13: -0.0222 REMARK 3 S21: 0.0368 S22: 0.0065 S23: 0.0532 REMARK 3 S31: 0.0591 S32: -0.1463 S33: 0.0001 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 294 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.0978 -1.0046 39.6031 REMARK 3 T TENSOR REMARK 3 T11: 0.0601 T22: 0.0419 REMARK 3 T33: 0.0839 T12: 0.0016 REMARK 3 T13: -0.0002 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.9732 L22: 1.0863 REMARK 3 L33: 3.6508 L12: -0.2580 REMARK 3 L13: 0.3879 L23: 0.5736 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: -0.0528 S13: -0.0105 REMARK 3 S21: 0.1222 S22: 0.0045 S23: 0.0252 REMARK 3 S31: 0.2197 S32: 0.0563 S33: -0.0628 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6S5X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292102451. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9778 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20225 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.17300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CRANK2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 3.5, 2 M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.28650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.44000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.44000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.14325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.44000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.44000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.42975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.44000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.44000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.14325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.44000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.44000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 108.42975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 72.28650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 616 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 307 REMARK 465 THR A 308 REMARK 465 THR B 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 294 O HOH A 502 1.52 REMARK 500 O HOH A 577 O HOH A 619 1.86 REMARK 500 O HOH A 524 O HOH A 603 1.98 REMARK 500 O HOH B 541 O HOH B 599 2.02 REMARK 500 O HOH B 505 O HOH B 622 2.05 REMARK 500 O HOH A 620 O HOH B 611 2.07 REMARK 500 O HOH B 511 O HOH B 595 2.15 REMARK 500 O HOH A 596 O HOH B 642 2.16 REMARK 500 NZ LYS B 294 O HOH B 501 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 598 O HOH A 601 4554 2.11 REMARK 500 O HOH A 606 O HOH B 584 8565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 231 O REMARK 620 2 ASN A 234 O 80.8 REMARK 620 3 ASP A 295 OD1 112.3 144.0 REMARK 620 4 ASP A 295 OD2 96.5 96.3 50.4 REMARK 620 5 HOH A 551 O 154.9 92.2 87.4 108.3 REMARK 620 6 HOH A 578 O 77.7 136.5 79.4 123.3 91.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 231 O REMARK 620 2 ASN B 234 O 81.9 REMARK 620 3 ASP B 295 OD1 109.7 151.2 REMARK 620 4 ASP B 295 OD2 102.7 103.2 49.3 REMARK 620 5 HOH B 520 O 80.0 68.3 138.4 170.8 REMARK 620 6 HOH B 600 O 82.4 141.2 67.5 114.7 74.2 REMARK 620 7 HOH B 627 O 161.4 95.4 81.4 95.8 81.9 88.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 401 DBREF 6S5X A 230 308 UNP P72362 P72362_STRAG 309 387 DBREF 6S5X B 230 308 UNP P72362 P72362_STRAG 309 387 SEQADV 6S5X GLY A 225 UNP P72362 EXPRESSION TAG SEQADV 6S5X PRO A 226 UNP P72362 EXPRESSION TAG SEQADV 6S5X LEU A 227 UNP P72362 EXPRESSION TAG SEQADV 6S5X GLY A 228 UNP P72362 EXPRESSION TAG SEQADV 6S5X SER A 229 UNP P72362 EXPRESSION TAG SEQADV 6S5X GLY B 225 UNP P72362 EXPRESSION TAG SEQADV 6S5X PRO B 226 UNP P72362 EXPRESSION TAG SEQADV 6S5X LEU B 227 UNP P72362 EXPRESSION TAG SEQADV 6S5X GLY B 228 UNP P72362 EXPRESSION TAG SEQADV 6S5X SER B 229 UNP P72362 EXPRESSION TAG SEQRES 1 A 84 GLY PRO LEU GLY SER ASP ALA ASP LYS ASN ASP PRO ALA SEQRES 2 A 84 GLY LYS ASP GLN GLN VAL ASN VAL GLY GLU THR PRO LYS SEQRES 3 A 84 ALA GLU ASP SER ILE GLY ASN LEU PRO ASP LEU PRO LYS SEQRES 4 A 84 GLY THR THR VAL ALA PHE GLU THR PRO VAL ASP THR ALA SEQRES 5 A 84 THR PRO GLY ASP LYS PRO ALA LYS VAL VAL VAL THR TYR SEQRES 6 A 84 PRO ASP GLY SER LYS ASP THR VAL ASP VAL THR VAL LYS SEQRES 7 A 84 VAL VAL ASP PRO ARG THR SEQRES 1 B 84 GLY PRO LEU GLY SER ASP ALA ASP LYS ASN ASP PRO ALA SEQRES 2 B 84 GLY LYS ASP GLN GLN VAL ASN VAL GLY GLU THR PRO LYS SEQRES 3 B 84 ALA GLU ASP SER ILE GLY ASN LEU PRO ASP LEU PRO LYS SEQRES 4 B 84 GLY THR THR VAL ALA PHE GLU THR PRO VAL ASP THR ALA SEQRES 5 B 84 THR PRO GLY ASP LYS PRO ALA LYS VAL VAL VAL THR TYR SEQRES 6 B 84 PRO ASP GLY SER LYS ASP THR VAL ASP VAL THR VAL LYS SEQRES 7 B 84 VAL VAL ASP PRO ARG THR HET NA A 401 1 HET NA B 401 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *291(H2 O) HELIX 1 AA1 ASP A 230 ASN A 234 5 5 HELIX 2 AA2 LYS A 250 ILE A 255 5 6 HELIX 3 AA3 ASN A 257 LEU A 261 5 5 HELIX 4 AA4 SER B 229 ASN B 234 1 6 HELIX 5 AA5 LYS B 250 ILE B 255 5 6 HELIX 6 AA6 ASN B 257 LEU B 261 5 5 SHEET 1 AA1 4 GLN A 241 ASN A 244 0 SHEET 2 AA1 4 LYS A 294 VAL A 304 1 O LYS A 302 N GLN A 241 SHEET 3 AA1 4 GLY A 279 THR A 288 -1 N VAL A 287 O ASP A 295 SHEET 4 AA1 4 THR A 266 PHE A 269 -1 N ALA A 268 O VAL A 286 SHEET 1 AA2 4 GLN B 241 ASN B 244 0 SHEET 2 AA2 4 LYS B 294 VAL B 304 1 O LYS B 302 N GLN B 241 SHEET 3 AA2 4 GLY B 279 THR B 288 -1 N VAL B 287 O ASP B 295 SHEET 4 AA2 4 THR B 266 PHE B 269 -1 N ALA B 268 O VAL B 286 LINK O ALA A 231 NA NA A 401 1555 1555 2.36 LINK O ASN A 234 NA NA A 401 1555 1555 2.32 LINK OD1 ASP A 295 NA NA A 401 1555 1555 2.75 LINK OD2 ASP A 295 NA NA A 401 1555 1555 2.33 LINK NA NA A 401 O HOH A 551 1555 1555 2.32 LINK NA NA A 401 O HOH A 578 1555 1555 2.34 LINK O ALA B 231 NA NA B 401 1555 1555 2.28 LINK O ASN B 234 NA NA B 401 1555 1555 2.27 LINK OD1 ASP B 295 NA NA B 401 1555 1555 2.85 LINK OD2 ASP B 295 NA NA B 401 1555 1555 2.31 LINK NA NA B 401 O HOH B 520 1555 1555 2.77 LINK NA NA B 401 O HOH B 600 1555 1555 2.40 LINK NA NA B 401 O HOH B 627 1555 1555 2.42 SITE 1 AC1 5 ALA A 231 ASN A 234 ASP A 295 HOH A 551 SITE 2 AC1 5 HOH A 578 SITE 1 AC2 6 ALA B 231 ASN B 234 ASP B 295 HOH B 520 SITE 2 AC2 6 HOH B 600 HOH B 627 CRYST1 48.880 48.880 144.573 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020458 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020458 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006917 0.00000