HEADER DNA BINDING PROTEIN 03-JUL-19 6S6H TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF THE CHROMOSOME- TITLE 2 PARTITIONING PROTEIN PARB COMPLEXED TO THE CENTROMERIC PARS SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMOSOME-PARTITIONING PROTEIN PARB; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: THE EXPRESSED PROTEIN COMPRISED RESIDUES 126-254 OF COMPND 6 THE WILD-TYPE SEQUENCE WITH AN ADDITIONAL N-TERMINAL MET RESIDUE AND COMPND 7 A C-TERMINAL NICKEL AFFINITY TAG OF SEQUENCE KLAAALEHHHHHH FROM THE COMPND 8 PET21B EXPRESSION PLASMID.; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: DNA (5'- COMPND 11 D(*GP*AP*TP*GP*TP*TP*TP*CP*AP*CP*GP*TP*GP*AP*AP*AP*CP*AP*TP*C)-3'); COMPND 12 CHAIN: C, D; COMPND 13 ENGINEERED: YES; COMPND 14 OTHER_DETAILS: CHAINS C AND D FORM A SYMMETRICAL DNA DUPLEX WHICH IS COMPND 15 SIMILAR TO THE PARS SEQUENCE FROM CAULOBACTER VIBRIOIDES WITHOUT 5' COMPND 16 PHOSPHATES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES NA1000; SOURCE 3 ORGANISM_TAXID: 565050; SOURCE 4 GENE: PARB, CCNA_03868; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA SOLU; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 12 ORGANISM_TAXID: 155892 KEYWDS CHROMOSOME SEGREGATION, CHROMOSOME MAINTENANCE, PROTEIN-DNA KEYWDS 2 RECOGNITION, EVOLUTION, DNA-BINDING PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.S.B.JALAL,N.T.TRAN,C.E.M.STEVENSON,E.X.TAN,D.M.LAWSON,T.B.K.LE REVDAT 3 24-JAN-24 6S6H 1 REMARK REVDAT 2 27-JAN-21 6S6H 1 JRNL REVDAT 1 15-JUL-20 6S6H 0 JRNL AUTH A.S.B.JALAL,N.T.TRAN,C.E.STEVENSON,E.W.CHAN,R.LO,X.TAN, JRNL AUTH 2 A.NOY,D.M.LAWSON,T.B.K.LE JRNL TITL DIVERSIFICATION OF DNA-BINDING SPECIFICITY BY PERMISSIVE AND JRNL TITL 2 SPECIFICITY-SWITCHING MUTATIONS IN THE PARB/NOC PROTEIN JRNL TITL 3 FAMILY. JRNL REF CELL REP V. 32 07928 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 32698006 JRNL DOI 10.1016/J.CELREP.2020.107928 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 15480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 826 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1096 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1917 REMARK 3 NUCLEIC ACID ATOMS : 814 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.09000 REMARK 3 B22 (A**2) : 2.82000 REMARK 3 B33 (A**2) : 1.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.86000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.435 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.243 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.210 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.018 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2857 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2357 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4034 ; 1.087 ; 1.475 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5461 ; 1.193 ; 1.852 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 5.104 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;32.980 ;21.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 333 ;14.037 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.987 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.044 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2660 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 556 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 125 249 B 125 249 3462 0.070 0.050 REMARK 3 2 C 1 20 D 1 20 1758 0.010 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1413 -4.9248 15.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.0389 T22: 0.2261 REMARK 3 T33: 0.1145 T12: 0.0197 REMARK 3 T13: -0.0025 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.1252 L22: 1.4335 REMARK 3 L33: 3.0199 L12: 0.0867 REMARK 3 L13: 0.4046 L23: -0.4529 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: -0.0273 S13: -0.3298 REMARK 3 S21: -0.1148 S22: -0.0222 S23: -0.0274 REMARK 3 S31: 0.2594 S32: 0.1504 S33: 0.0750 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 125 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -18.6275 6.3940 18.0931 REMARK 3 T TENSOR REMARK 3 T11: 0.0931 T22: 0.3799 REMARK 3 T33: 0.0714 T12: 0.0251 REMARK 3 T13: -0.0789 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.4866 L22: 0.6882 REMARK 3 L33: 0.9218 L12: -0.0623 REMARK 3 L13: -0.5520 L23: -0.6350 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: -0.0751 S13: 0.0341 REMARK 3 S21: 0.0455 S22: -0.0260 S23: 0.0053 REMARK 3 S31: -0.1138 S32: -0.0920 S33: 0.0254 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 20 REMARK 3 ORIGIN FOR THE GROUP (A): 0.2783 -0.0869 25.2741 REMARK 3 T TENSOR REMARK 3 T11: 0.0338 T22: 0.1338 REMARK 3 T33: 0.0304 T12: -0.0007 REMARK 3 T13: 0.0205 T23: 0.0355 REMARK 3 L TENSOR REMARK 3 L11: 5.7159 L22: 1.0966 REMARK 3 L33: 1.3866 L12: 0.1187 REMARK 3 L13: 0.1244 L23: 0.2908 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.4296 S13: -0.2715 REMARK 3 S21: 0.1872 S22: -0.0537 S23: 0.1136 REMARK 3 S31: 0.0060 S32: -0.0736 S33: 0.0395 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 20 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3286 0.2428 25.2625 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.1137 REMARK 3 T33: 0.0070 T12: -0.0029 REMARK 3 T13: -0.0065 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 6.1018 L22: 0.8941 REMARK 3 L33: 1.2633 L12: 0.8792 REMARK 3 L13: 0.1285 L23: -0.0801 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.3138 S13: -0.0569 REMARK 3 S21: 0.1823 S22: -0.0415 S23: -0.0337 REMARK 3 S31: -0.0131 S32: 0.0160 S33: 0.0494 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6S6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.11.4 REMARK 200 DATA SCALING SOFTWARE : DIALS 1.11.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16317 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.80100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 4UMK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL, PH 8.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 63.54950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.35850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 63.54950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.35850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 238 REMARK 465 LEU A 239 REMARK 465 SER A 240 REMARK 465 ALA A 241 REMARK 465 GLY A 242 REMARK 465 ARG A 251 REMARK 465 VAL A 252 REMARK 465 LYS A 253 REMARK 465 ASP A 254 REMARK 465 LYS A 255 REMARK 465 LEU A 256 REMARK 465 ALA A 257 REMARK 465 ALA A 258 REMARK 465 ALA A 259 REMARK 465 LEU A 260 REMARK 465 GLU A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 465 HIS A 265 REMARK 465 HIS A 266 REMARK 465 HIS A 267 REMARK 465 HIS B 265 REMARK 465 HIS B 266 REMARK 465 HIS B 267 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 243 CG CD CE NZ REMARK 470 LYS B 217 CE NZ REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 ASN B 238 CG OD1 ND2 REMARK 470 LEU B 239 CG CD1 CD2 REMARK 470 SER B 240 OG REMARK 470 LYS B 243 CG CD CE NZ REMARK 470 ARG B 251 CD NE CZ NH1 NH2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 LYS B 255 CG CD CE NZ REMARK 470 HIS B 263 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 264 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 235 44.35 -97.40 REMARK 500 LYS B 235 42.11 -97.34 REMARK 500 ALA B 236 53.08 -171.51 REMARK 500 LEU B 239 4.97 -66.22 REMARK 500 SER B 240 22.40 -79.02 REMARK 500 ASP B 254 96.25 71.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 DBREF 6S6H A 126 254 UNP B8GW30 PARB_CAUVN 126 254 DBREF 6S6H B 126 254 UNP B8GW30 PARB_CAUVN 126 254 DBREF 6S6H C 1 20 PDB 6S6H 6S6H 1 20 DBREF 6S6H D 1 20 PDB 6S6H 6S6H 1 20 SEQADV 6S6H MET A 125 UNP B8GW30 INITIATING METHIONINE SEQADV 6S6H LYS A 255 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H LEU A 256 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H ALA A 257 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H ALA A 258 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H ALA A 259 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H LEU A 260 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H GLU A 261 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS A 262 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS A 263 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS A 264 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS A 265 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS A 266 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS A 267 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H MET B 125 UNP B8GW30 INITIATING METHIONINE SEQADV 6S6H LYS B 255 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H LEU B 256 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H ALA B 257 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H ALA B 258 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H ALA B 259 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H LEU B 260 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H GLU B 261 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS B 262 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS B 263 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS B 264 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS B 265 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS B 266 UNP B8GW30 EXPRESSION TAG SEQADV 6S6H HIS B 267 UNP B8GW30 EXPRESSION TAG SEQRES 1 A 143 MET LEU ALA VAL LEU GLU ILE GLY ILE ILE GLU ASN VAL SEQRES 2 A 143 GLN ARG ALA ASP LEU ASN VAL LEU GLU GLU ALA LEU SER SEQRES 3 A 143 TYR LYS VAL LEU MET GLU LYS PHE GLU ARG THR GLN GLU SEQRES 4 A 143 ASN ILE ALA GLN THR ILE GLY LYS SER ARG SER HIS VAL SEQRES 5 A 143 ALA ASN THR MET ARG LEU LEU ALA LEU PRO ASP GLU VAL SEQRES 6 A 143 GLN SER TYR LEU VAL SER GLY GLU LEU THR ALA GLY HIS SEQRES 7 A 143 ALA ARG ALA ILE ALA ALA ALA ALA ASP PRO VAL ALA LEU SEQRES 8 A 143 ALA LYS GLN ILE ILE GLU GLY GLY LEU SER VAL ARG GLU SEQRES 9 A 143 THR GLU ALA LEU ALA ARG LYS ALA PRO ASN LEU SER ALA SEQRES 10 A 143 GLY LYS SER LYS GLY GLY ARG PRO PRO ARG VAL LYS ASP SEQRES 11 A 143 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 143 MET LEU ALA VAL LEU GLU ILE GLY ILE ILE GLU ASN VAL SEQRES 2 B 143 GLN ARG ALA ASP LEU ASN VAL LEU GLU GLU ALA LEU SER SEQRES 3 B 143 TYR LYS VAL LEU MET GLU LYS PHE GLU ARG THR GLN GLU SEQRES 4 B 143 ASN ILE ALA GLN THR ILE GLY LYS SER ARG SER HIS VAL SEQRES 5 B 143 ALA ASN THR MET ARG LEU LEU ALA LEU PRO ASP GLU VAL SEQRES 6 B 143 GLN SER TYR LEU VAL SER GLY GLU LEU THR ALA GLY HIS SEQRES 7 B 143 ALA ARG ALA ILE ALA ALA ALA ALA ASP PRO VAL ALA LEU SEQRES 8 B 143 ALA LYS GLN ILE ILE GLU GLY GLY LEU SER VAL ARG GLU SEQRES 9 B 143 THR GLU ALA LEU ALA ARG LYS ALA PRO ASN LEU SER ALA SEQRES 10 B 143 GLY LYS SER LYS GLY GLY ARG PRO PRO ARG VAL LYS ASP SEQRES 11 B 143 LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 20 DG DA DT DG DT DT DT DC DA DC DG DT DG SEQRES 2 C 20 DA DA DA DC DA DT DC SEQRES 1 D 20 DG DA DT DG DT DT DT DC DA DC DG DT DG SEQRES 2 D 20 DA DA DA DC DA DT DC HET GOL A 301 6 HET GOL A 302 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *82(H2 O) HELIX 1 AA1 ALA A 127 ASN A 136 1 10 HELIX 2 AA2 ASN A 143 GLU A 159 1 17 HELIX 3 AA3 THR A 161 GLY A 170 1 10 HELIX 4 AA4 SER A 172 LEU A 182 1 11 HELIX 5 AA5 LEU A 183 LEU A 185 5 3 HELIX 6 AA6 PRO A 186 GLY A 196 1 11 HELIX 7 AA7 THR A 199 ILE A 206 1 8 HELIX 8 AA8 ASP A 211 GLY A 223 1 13 HELIX 9 AA9 SER A 225 LYS A 235 1 11 HELIX 10 AB1 ALA B 127 ASN B 136 1 10 HELIX 11 AB2 ASN B 143 GLU B 159 1 17 HELIX 12 AB3 THR B 161 GLY B 170 1 10 HELIX 13 AB4 SER B 172 LEU B 182 1 11 HELIX 14 AB5 LEU B 183 LEU B 185 5 3 HELIX 15 AB6 PRO B 186 GLY B 196 1 11 HELIX 16 AB7 THR B 199 ILE B 206 1 8 HELIX 17 AB8 ASP B 211 GLY B 223 1 13 HELIX 18 AB9 SER B 225 LYS B 235 1 11 HELIX 19 AC1 ASP B 254 HIS B 264 1 11 SITE 1 AC1 5 ASN A 143 VAL A 144 THR A 199 ALA A 200 SITE 2 AC1 5 DT D 12 SITE 1 AC2 5 HIS A 175 THR A 179 ALA A 200 ARG A 204 SITE 2 AC2 5 DG D 13 CRYST1 127.099 40.717 94.004 90.00 121.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007868 0.000000 0.004803 0.00000 SCALE2 0.000000 0.024560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012463 0.00000