HEADER TRANSPORT PROTEIN 10-JUL-19 6S8G TITLE CRYO-EM STRUCTURE OF LPTB2FGC IN COMPLEX WITH AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE ABC TRANSPORTER, ATP-BINDING PROTEIN COMPND 3 LPTB; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LPS EXPORT ABC TRANSPORTER PERMEASE LPTF; COMPND 8 CHAIN: F; COMPND 9 SYNONYM: LIPOPOLYSACCHARIDE ABC TRANSPORTER PERMEASE LPTF; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: INNER MEMBRANE PROTEIN YJGQ; COMPND 13 CHAIN: G; COMPND 14 SYNONYM: LPS EXPORT ABC TRANSPORTER PERMEASE LPTG; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: SGF_01136; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 9 ORGANISM_TAXID: 623; SOURCE 10 GENE: YJGP, CEG98_18960, CQA91_25115, DOU91_08970, NCTC9783_00310, SOURCE 11 SAMEA3710568_03583; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 16 ORGANISM_TAXID: 623; SOURCE 17 GENE: YJGQ, S4488, CQA91_25110, NCTC9783_00309, SAMEA3710568_03584; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LIPOPOLYSACCHARIDE TRANSPORTER, LPS, LPTB2FGC, LPTB, LPTBFG, OUTER KEYWDS 2 MEMBRANE, GRAM-NEGATIVE BACTERIA, ABC TRANSPORTER, INNER MEMBRANE KEYWDS 3 PROTEIN COMPLEX, TRANSPORT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.D.TANG,S.H.CHANG,Q.H.LUO,Z.Y.ZHANG,W.QIAO,C.H.XU,C.B.ZHANG,Y.NIU, AUTHOR 2 W.X.YANG,T.WANG,Z.B.ZHANG,X.F.ZHU,C.J.DONG,X.ZHANG,H.H.DONG REVDAT 2 22-MAY-24 6S8G 1 REMARK REVDAT 1 25-SEP-19 6S8G 0 JRNL AUTH X.TANG,S.CHANG,Q.LUO,Z.ZHANG,W.QIAO,C.XU,C.ZHANG,Y.NIU, JRNL AUTH 2 W.YANG,T.WANG,Z.ZHANG,X.ZHU,X.WEI,C.DONG,X.ZHANG,H.DONG JRNL TITL CRYO-EM STRUCTURES OF LIPOPOLYSACCHARIDE TRANSPORTER JRNL TITL 2 LPTB2FGC IN LIPOPOLYSACCHARIDE OR AMP-PNP-BOUND STATES JRNL TITL 3 REVEAL ITS TRANSPORT MECHANISM. JRNL REF NAT COMMUN V. 10 4175 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31519889 JRNL DOI 10.1038/S41467-019-11977-1 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH X.TANG,S.CHANG,Q.LUO,Z.ZHANG,W.QIAO,C.XU,C.ZHANG,Y.NIU, REMARK 1 AUTH 2 W.YANG,T.WANG,Z.ZHANG,X.ZHU,X.WEI,C.DONG,X.ZHANG,H.DONG REMARK 1 TITL CRYO-EM STRUCTURES OF LIPOPOLYSACCHARIDE TRANSPORTER REMARK 1 TITL 2 LPTB2FGC IN LIPOPOLYSACCHARIDE OR AMP-PNP-BOUND STATES REMARK 1 TITL 3 REVEAL ITS TRANSPORT MECHANISM. REMARK 1 REF NAT COMMUN V. 10 4175 2019 REMARK 1 REFN ESSN 2041-1723 REMARK 1 PMID 31519889 REMARK 1 DOI 10.1038/S41467-019-11977-1 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : SERIALEM, EMAN2, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.500 REMARK 3 NUMBER OF PARTICLES : 149178 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6S8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103274. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : LPTB2FGC REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : LPS TRANSPORTER LPTB2FGC REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : DIFFRACTION REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 240 REMARK 465 LEU A 241 REMARK 465 MET B 1 REMARK 465 LEU B 241 REMARK 465 MET F 1 REMARK 465 GLU F 134 REMARK 465 ALA F 135 REMARK 465 LYS F 136 REMARK 465 ALA F 137 REMARK 465 ASN F 138 REMARK 465 PRO F 139 REMARK 465 GLY F 140 REMARK 465 MET F 141 REMARK 465 ALA F 142 REMARK 465 ALA F 143 REMARK 465 LEU F 144 REMARK 465 ALA F 145 REMARK 465 GLN F 146 REMARK 465 GLY F 147 REMARK 465 GLN F 148 REMARK 465 PHE F 149 REMARK 465 GLN F 150 REMARK 465 GLN F 151 REMARK 465 ALA F 152 REMARK 465 THR F 153 REMARK 465 ASN F 154 REMARK 465 GLY F 155 REMARK 465 SER F 156 REMARK 465 SER F 157 REMARK 465 VAL F 158 REMARK 465 LEU F 159 REMARK 465 PHE F 160 REMARK 465 ILE F 161 REMARK 465 GLU F 162 REMARK 465 SER F 163 REMARK 465 VAL F 164 REMARK 465 ASP F 165 REMARK 465 GLY F 166 REMARK 465 SER F 167 REMARK 465 ASP F 168 REMARK 465 PHE F 169 REMARK 465 LYS F 170 REMARK 465 ASP F 171 REMARK 465 VAL F 172 REMARK 465 PHE F 173 REMARK 465 LEU F 174 REMARK 465 ALA F 175 REMARK 465 GLN F 176 REMARK 465 ILE F 177 REMARK 465 ARG F 178 REMARK 465 PRO F 179 REMARK 465 LYS F 180 REMARK 465 GLY F 181 REMARK 465 ASN F 182 REMARK 465 ALA F 183 REMARK 465 ARG F 184 REMARK 465 PRO F 185 REMARK 465 SER F 186 REMARK 465 VAL F 187 REMARK 465 VAL F 188 REMARK 465 VAL F 189 REMARK 465 ALA F 190 REMARK 465 ASP F 191 REMARK 465 SER F 192 REMARK 465 GLY F 193 REMARK 465 HIS F 194 REMARK 465 LEU F 195 REMARK 465 THR F 196 REMARK 465 GLN F 197 REMARK 465 LEU F 198 REMARK 465 ARG F 199 REMARK 465 ASP F 200 REMARK 465 GLY F 201 REMARK 465 SER F 202 REMARK 465 GLN F 203 REMARK 465 VAL F 204 REMARK 465 VAL F 205 REMARK 465 THR F 206 REMARK 465 LEU F 207 REMARK 465 ASN F 208 REMARK 465 GLN F 209 REMARK 465 GLY F 210 REMARK 465 THR F 211 REMARK 465 ARG F 212 REMARK 465 PHE F 213 REMARK 465 GLU F 214 REMARK 465 GLY F 215 REMARK 465 THR F 216 REMARK 465 ALA F 217 REMARK 465 LEU F 218 REMARK 465 LEU F 219 REMARK 465 ARG F 220 REMARK 465 ASP F 221 REMARK 465 PHE F 222 REMARK 465 ARG F 223 REMARK 465 ILE F 224 REMARK 465 THR F 225 REMARK 465 ASP F 226 REMARK 465 PHE F 227 REMARK 465 GLN F 228 REMARK 465 ASP F 229 REMARK 465 TYR F 230 REMARK 465 GLN F 231 REMARK 465 ALA F 232 REMARK 465 ILE F 233 REMARK 465 ILE F 234 REMARK 465 GLY F 235 REMARK 465 HIS F 236 REMARK 465 GLN F 237 REMARK 465 ALA F 238 REMARK 465 VAL F 239 REMARK 465 ALA F 240 REMARK 465 LEU F 241 REMARK 465 ASP F 242 REMARK 465 PRO F 243 REMARK 465 ASN F 244 REMARK 465 ASP F 245 REMARK 465 THR F 246 REMARK 465 ASP F 247 REMARK 465 GLN F 248 REMARK 465 VAL F 353 REMARK 465 ARG F 354 REMARK 465 ARG F 355 REMARK 465 LEU F 356 REMARK 465 ARG F 357 REMARK 465 ALA F 358 REMARK 465 SER F 359 REMARK 465 PHE F 360 REMARK 465 SER F 361 REMARK 465 ARG F 362 REMARK 465 LYS F 363 REMARK 465 GLY F 364 REMARK 465 ALA F 365 REMARK 465 VAL F 366 REMARK 465 TYR G 141 REMARK 465 GLY G 142 REMARK 465 GLY G 143 REMARK 465 SER G 144 REMARK 465 LEU G 145 REMARK 465 LEU G 146 REMARK 465 SER G 147 REMARK 465 THR G 148 REMARK 465 GLN G 149 REMARK 465 GLN G 150 REMARK 465 GLY G 151 REMARK 465 LEU G 152 REMARK 465 TRP G 153 REMARK 465 ALA G 154 REMARK 465 LYS G 155 REMARK 465 ASP G 156 REMARK 465 GLY G 157 REMARK 465 ASN G 158 REMARK 465 ASN G 159 REMARK 465 PHE G 160 REMARK 465 VAL G 161 REMARK 465 TYR G 162 REMARK 465 ILE G 163 REMARK 465 GLU G 164 REMARK 465 ARG G 165 REMARK 465 VAL G 166 REMARK 465 LYS G 167 REMARK 465 GLY G 168 REMARK 465 ASP G 169 REMARK 465 GLU G 170 REMARK 465 VAL G 171 REMARK 465 LEU G 172 REMARK 465 GLY G 173 REMARK 465 GLY G 174 REMARK 465 ILE G 175 REMARK 465 SER G 176 REMARK 465 ILE G 177 REMARK 465 TYR G 178 REMARK 465 ALA G 179 REMARK 465 PHE G 180 REMARK 465 ASN G 181 REMARK 465 GLU G 182 REMARK 465 ASN G 183 REMARK 465 ARG G 184 REMARK 465 ARG G 185 REMARK 465 LEU G 186 REMARK 465 GLN G 187 REMARK 465 SER G 188 REMARK 465 VAL G 189 REMARK 465 ARG G 190 REMARK 465 TYR G 191 REMARK 465 ALA G 192 REMARK 465 ALA G 193 REMARK 465 THR G 194 REMARK 465 ALA G 195 REMARK 465 LYS G 196 REMARK 465 PHE G 197 REMARK 465 ASP G 198 REMARK 465 PRO G 199 REMARK 465 GLU G 200 REMARK 465 HIS G 201 REMARK 465 LYS G 202 REMARK 465 VAL G 203 REMARK 465 TRP G 204 REMARK 465 ARG G 205 REMARK 465 LEU G 206 REMARK 465 SER G 207 REMARK 465 GLN G 208 REMARK 465 VAL G 209 REMARK 465 ASP G 210 REMARK 465 GLU G 211 REMARK 465 SER G 212 REMARK 465 ASP G 213 REMARK 465 LEU G 214 REMARK 465 THR G 215 REMARK 465 ASN G 216 REMARK 465 PRO G 217 REMARK 465 LYS G 218 REMARK 465 GLN G 219 REMARK 465 ILE G 220 REMARK 465 THR G 221 REMARK 465 GLY G 222 REMARK 465 SER G 223 REMARK 465 GLN G 224 REMARK 465 THR G 225 REMARK 465 VAL G 226 REMARK 465 SER G 227 REMARK 465 GLY G 228 REMARK 465 THR G 229 REMARK 465 TRP G 230 REMARK 465 LYS G 231 REMARK 465 THR G 232 REMARK 465 ASP G 233 REMARK 465 LEU G 234 REMARK 465 THR G 235 REMARK 465 PRO G 236 REMARK 465 ASP G 237 REMARK 465 LYS G 238 REMARK 465 LEU G 239 REMARK 465 GLY G 240 REMARK 465 VAL G 241 REMARK 465 VAL G 242 REMARK 465 ALA G 243 REMARK 465 LEU G 244 REMARK 465 ASP G 245 REMARK 465 PRO G 246 REMARK 465 ASP G 247 REMARK 465 ALA G 248 REMARK 465 SER G 263 REMARK 465 SER G 264 REMARK 465 GLY G 265 REMARK 465 GLN G 266 REMARK 465 ASP G 267 REMARK 465 ALA G 268 REMARK 465 LYS G 359 REMARK 465 SER G 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA B 2 N REMARK 470 LEU F 132 CG CD1 CD2 REMARK 470 TYR G 271 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN G 272 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 63 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 63 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 20 -160.94 -121.20 REMARK 500 ASP A 21 84.75 -67.67 REMARK 500 ASN A 38 46.76 -81.67 REMARK 500 ALA A 57 17.77 -143.05 REMARK 500 ASP A 63 -23.34 67.68 REMARK 500 ASP A 64 -5.77 -151.30 REMARK 500 ASP A 65 -166.74 -102.86 REMARK 500 GLU A 86 45.03 -93.07 REMARK 500 ARG A 91 -10.90 70.42 REMARK 500 ARG A 106 72.82 61.10 REMARK 500 ASP A 108 -2.58 -141.22 REMARK 500 LEU A 130 41.27 -102.37 REMARK 500 SER A 133 -73.89 -97.75 REMARK 500 MET A 134 175.43 176.38 REMARK 500 GLU A 163 72.27 52.28 REMARK 500 PHE A 165 34.60 -99.03 REMARK 500 VAL A 168 -70.13 -101.64 REMARK 500 THR A 193 48.43 -140.09 REMARK 500 ARG A 198 -28.35 -144.75 REMARK 500 GLN A 212 -39.23 -36.41 REMARK 500 GLN A 226 42.94 -94.05 REMARK 500 GLU B 20 -160.98 -121.25 REMARK 500 ASP B 21 84.75 -67.69 REMARK 500 ASN B 38 46.80 -81.68 REMARK 500 ALA B 57 17.84 -143.11 REMARK 500 ASP B 63 -23.31 67.70 REMARK 500 ASP B 64 -5.79 -151.30 REMARK 500 ASP B 65 -166.72 -102.88 REMARK 500 GLU B 86 45.11 -93.07 REMARK 500 ARG B 91 -10.99 70.41 REMARK 500 ARG B 106 72.78 61.13 REMARK 500 ASP B 108 -2.57 -141.19 REMARK 500 LEU B 130 41.20 -102.28 REMARK 500 SER B 133 -73.92 -97.69 REMARK 500 MET B 134 175.44 176.40 REMARK 500 GLU B 163 72.27 52.35 REMARK 500 PHE B 165 34.69 -99.07 REMARK 500 VAL B 168 -70.18 -101.60 REMARK 500 THR B 193 48.49 -140.01 REMARK 500 ARG B 198 -28.34 -144.69 REMARK 500 GLN B 212 -39.35 -36.31 REMARK 500 GLN B 226 42.97 -94.08 REMARK 500 ALA F 60 48.79 -88.07 REMARK 500 LEU F 266 -2.61 65.83 REMARK 500 PRO F 327 42.45 -86.33 REMARK 500 THR F 328 -30.23 -130.60 REMARK 500 LEU F 347 78.85 -100.01 REMARK 500 ASP G 48 -158.86 -148.48 REMARK 500 ALA G 139 17.06 -143.51 REMARK 500 LEU G 273 57.41 -91.62 REMARK 500 REMARK 500 THIS ENTRY HAS 58 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LMD F 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMD F 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-10121 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF LPTB2FGC IN COMPLEX WITH AMP-PNP DBREF 6S8G A 1 241 UNP E7T9E6 E7T9E6_SHIFL 1 241 DBREF 6S8G B 1 241 UNP E7T9E6 E7T9E6_SHIFL 1 241 DBREF1 6S8G F 1 366 UNP A0A1W2MGV2_SHIFL DBREF2 6S8G F A0A1W2MGV2 1 366 DBREF1 6S8G G 1 360 UNP A0A2S4N3I3_SHIFL DBREF2 6S8G G A0A2S4N3I3 1 360 SEQADV 6S8G GLU F 133 UNP A0A1W2MGV ALA 133 CONFLICT SEQADV 6S8G VAL F 274 UNP A0A1W2MGV PHE 274 CONFLICT SEQADV 6S8G PHE F 352 UNP A0A1W2MGV PRO 352 CONFLICT SEQRES 1 A 241 MET ALA THR LEU THR ALA LYS ASN LEU ALA LYS ALA TYR SEQRES 2 A 241 LYS GLY ARG ARG VAL VAL GLU ASP VAL SER LEU THR VAL SEQRES 3 A 241 ASN SER GLY GLU ILE VAL GLY LEU LEU GLY PRO ASN GLY SEQRES 4 A 241 ALA GLY LYS THR THR THR PHE TYR MET VAL VAL GLY ILE SEQRES 5 A 241 VAL PRO ARG ASP ALA GLY ASN ILE ILE ILE ASP ASP ASP SEQRES 6 A 241 ASP ILE SER LEU LEU PRO LEU HIS ALA ARG ALA ARG ARG SEQRES 7 A 241 GLY ILE GLY TYR LEU PRO GLN GLU ALA SER ILE PHE ARG SEQRES 8 A 241 ARG LEU SER VAL TYR ASP ASN LEU MET ALA VAL LEU GLN SEQRES 9 A 241 ILE ARG ASP ASP LEU SER ALA GLU GLN ARG GLU ASP ARG SEQRES 10 A 241 ALA ASN GLU LEU MET GLU GLU PHE HIS ILE GLU HIS LEU SEQRES 11 A 241 ARG ASP SER MET GLY GLN SER LEU SER GLY GLY GLU ARG SEQRES 12 A 241 ARG ARG VAL GLU ILE ALA ARG ALA LEU ALA ALA ASN PRO SEQRES 13 A 241 LYS PHE ILE LEU LEU ASP GLU PRO PHE ALA GLY VAL ASP SEQRES 14 A 241 PRO ILE SER VAL ILE ASP ILE LYS ARG ILE ILE GLU HIS SEQRES 15 A 241 LEU ARG ASP SER GLY LEU GLY VAL LEU ILE THR ASP HIS SEQRES 16 A 241 ASN VAL ARG GLU THR LEU ALA VAL CYS GLU ARG ALA TYR SEQRES 17 A 241 ILE VAL SER GLN GLY HIS LEU ILE ALA HIS GLY THR PRO SEQRES 18 A 241 THR GLU ILE LEU GLN ASP GLU HIS VAL LYS ARG VAL TYR SEQRES 19 A 241 LEU GLY GLU ASP PHE ARG LEU SEQRES 1 B 241 MET ALA THR LEU THR ALA LYS ASN LEU ALA LYS ALA TYR SEQRES 2 B 241 LYS GLY ARG ARG VAL VAL GLU ASP VAL SER LEU THR VAL SEQRES 3 B 241 ASN SER GLY GLU ILE VAL GLY LEU LEU GLY PRO ASN GLY SEQRES 4 B 241 ALA GLY LYS THR THR THR PHE TYR MET VAL VAL GLY ILE SEQRES 5 B 241 VAL PRO ARG ASP ALA GLY ASN ILE ILE ILE ASP ASP ASP SEQRES 6 B 241 ASP ILE SER LEU LEU PRO LEU HIS ALA ARG ALA ARG ARG SEQRES 7 B 241 GLY ILE GLY TYR LEU PRO GLN GLU ALA SER ILE PHE ARG SEQRES 8 B 241 ARG LEU SER VAL TYR ASP ASN LEU MET ALA VAL LEU GLN SEQRES 9 B 241 ILE ARG ASP ASP LEU SER ALA GLU GLN ARG GLU ASP ARG SEQRES 10 B 241 ALA ASN GLU LEU MET GLU GLU PHE HIS ILE GLU HIS LEU SEQRES 11 B 241 ARG ASP SER MET GLY GLN SER LEU SER GLY GLY GLU ARG SEQRES 12 B 241 ARG ARG VAL GLU ILE ALA ARG ALA LEU ALA ALA ASN PRO SEQRES 13 B 241 LYS PHE ILE LEU LEU ASP GLU PRO PHE ALA GLY VAL ASP SEQRES 14 B 241 PRO ILE SER VAL ILE ASP ILE LYS ARG ILE ILE GLU HIS SEQRES 15 B 241 LEU ARG ASP SER GLY LEU GLY VAL LEU ILE THR ASP HIS SEQRES 16 B 241 ASN VAL ARG GLU THR LEU ALA VAL CYS GLU ARG ALA TYR SEQRES 17 B 241 ILE VAL SER GLN GLY HIS LEU ILE ALA HIS GLY THR PRO SEQRES 18 B 241 THR GLU ILE LEU GLN ASP GLU HIS VAL LYS ARG VAL TYR SEQRES 19 B 241 LEU GLY GLU ASP PHE ARG LEU SEQRES 1 F 366 MET ILE ILE ILE ARG TYR LEU VAL ARG GLU THR LEU LYS SEQRES 2 F 366 SER GLN LEU ALA ILE LEU PHE ILE LEU LEU LEU ILE PHE SEQRES 3 F 366 PHE CYS GLN LYS LEU VAL ARG ILE LEU GLY ALA ALA VAL SEQRES 4 F 366 ASP GLY ASP ILE PRO ALA ASN LEU VAL LEU SER LEU LEU SEQRES 5 F 366 GLY LEU GLY VAL PRO GLU MET ALA GLN LEU ILE LEU PRO SEQRES 6 F 366 LEU SER LEU PHE LEU GLY LEU LEU MET THR LEU GLY LYS SEQRES 7 F 366 LEU TYR THR GLU SER GLU ILE THR VAL MET HIS ALA CYS SEQRES 8 F 366 GLY LEU SER LYS ALA VAL LEU VAL LYS ALA ALA MET ILE SEQRES 9 F 366 LEU ALA VAL PHE THR ALA ILE VAL ALA ALA VAL ASN VAL SEQRES 10 F 366 MET TRP ALA GLY PRO TRP SER SER ARG HIS GLN ASP GLU SEQRES 11 F 366 VAL LEU GLU GLU ALA LYS ALA ASN PRO GLY MET ALA ALA SEQRES 12 F 366 LEU ALA GLN GLY GLN PHE GLN GLN ALA THR ASN GLY SER SEQRES 13 F 366 SER VAL LEU PHE ILE GLU SER VAL ASP GLY SER ASP PHE SEQRES 14 F 366 LYS ASP VAL PHE LEU ALA GLN ILE ARG PRO LYS GLY ASN SEQRES 15 F 366 ALA ARG PRO SER VAL VAL VAL ALA ASP SER GLY HIS LEU SEQRES 16 F 366 THR GLN LEU ARG ASP GLY SER GLN VAL VAL THR LEU ASN SEQRES 17 F 366 GLN GLY THR ARG PHE GLU GLY THR ALA LEU LEU ARG ASP SEQRES 18 F 366 PHE ARG ILE THR ASP PHE GLN ASP TYR GLN ALA ILE ILE SEQRES 19 F 366 GLY HIS GLN ALA VAL ALA LEU ASP PRO ASN ASP THR ASP SEQRES 20 F 366 GLN MET ASP MET ARG THR LEU TRP ASN THR ASP THR ASP SEQRES 21 F 366 ARG ALA ARG ALA GLU LEU ASN TRP ARG ILE THR LEU VAL SEQRES 22 F 366 VAL THR VAL PHE MET MET ALA LEU MET VAL VAL PRO LEU SEQRES 23 F 366 SER VAL VAL ASN PRO ARG GLN GLY ARG VAL LEU SER MET SEQRES 24 F 366 LEU PRO ALA MET LEU LEU TYR LEU LEU PHE PHE LEU ILE SEQRES 25 F 366 GLN THR SER LEU LYS SER ASN GLY GLY LYS GLY LYS LEU SEQRES 26 F 366 ASP PRO THR LEU TRP MET TRP THR VAL ASN LEU ILE TYR SEQRES 27 F 366 LEU ALA LEU ALA ILE VAL LEU ASN LEU TRP ASP THR VAL SEQRES 28 F 366 PHE VAL ARG ARG LEU ARG ALA SER PHE SER ARG LYS GLY SEQRES 29 F 366 ALA VAL SEQRES 1 G 360 MET GLN PRO PHE GLY VAL LEU ASP ARG TYR ILE GLY LYS SEQRES 2 G 360 THR ILE PHE THR THR ILE MET MET THR LEU PHE MET LEU SEQRES 3 G 360 VAL SER LEU SER GLY ILE ILE LYS PHE VAL ASP GLN LEU SEQRES 4 G 360 LYS LYS ALA GLY GLN GLY SER TYR ASP ALA LEU GLY ALA SEQRES 5 G 360 GLY MET TYR THR LEU LEU SER VAL PRO LYS ASP VAL GLN SEQRES 6 G 360 ILE PHE PHE PRO MET ALA ALA LEU LEU GLY ALA LEU LEU SEQRES 7 G 360 GLY LEU GLY MET LEU ALA GLN ARG SER GLU LEU VAL VAL SEQRES 8 G 360 MET GLN ALA SER GLY PHE THR ARG MET GLN VAL ALA LEU SEQRES 9 G 360 SER VAL MET LYS THR ALA ILE PRO LEU VAL LEU LEU THR SEQRES 10 G 360 MET ALA ILE GLY GLU TRP VAL ALA PRO GLN GLY GLU GLN SEQRES 11 G 360 MET ALA ARG ASN TYR ARG ALA GLN ALA MET TYR GLY GLY SEQRES 12 G 360 SER LEU LEU SER THR GLN GLN GLY LEU TRP ALA LYS ASP SEQRES 13 G 360 GLY ASN ASN PHE VAL TYR ILE GLU ARG VAL LYS GLY ASP SEQRES 14 G 360 GLU VAL LEU GLY GLY ILE SER ILE TYR ALA PHE ASN GLU SEQRES 15 G 360 ASN ARG ARG LEU GLN SER VAL ARG TYR ALA ALA THR ALA SEQRES 16 G 360 LYS PHE ASP PRO GLU HIS LYS VAL TRP ARG LEU SER GLN SEQRES 17 G 360 VAL ASP GLU SER ASP LEU THR ASN PRO LYS GLN ILE THR SEQRES 18 G 360 GLY SER GLN THR VAL SER GLY THR TRP LYS THR ASP LEU SEQRES 19 G 360 THR PRO ASP LYS LEU GLY VAL VAL ALA LEU ASP PRO ASP SEQRES 20 G 360 ALA LEU SER ILE SER GLY LEU HIS ASN TYR VAL LYS TYR SEQRES 21 G 360 LEU LYS SER SER GLY GLN ASP ALA GLY ARG TYR GLN LEU SEQRES 22 G 360 ASN MET TRP SER LYS ILE PHE GLN PRO LEU SER VAL ALA SEQRES 23 G 360 VAL MET MET LEU MET ALA LEU SER PHE ILE PHE GLY PRO SEQRES 24 G 360 LEU ARG SER VAL PRO MET GLY VAL ARG VAL VAL THR GLY SEQRES 25 G 360 ILE SER PHE GLY PHE VAL PHE TYR VAL LEU ASP GLN ILE SEQRES 26 G 360 PHE GLY PRO LEU THR LEU VAL TYR GLY ILE PRO PRO ILE SEQRES 27 G 360 ILE GLY ALA LEU LEU PRO SER ALA SER PHE PHE LEU ILE SEQRES 28 G 360 SER LEU TRP LEU LEU MET ARG LYS SER HET ANP A 401 31 HET ANP B 401 31 HET LMD F 501 24 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM LMD TETRADECYL 4-O-ALPHA-D-GLUCOPYRANOSYL-BETA-D- HETNAM 2 LMD GLUCOPYRANOSIDE HETSYN LMD N-TETRADECYL-B-D-MALTOPYRANOSID FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 7 LMD C26 H50 O11 HELIX 1 AA1 THR A 43 GLY A 51 1 9 HELIX 2 AA2 PRO A 71 GLY A 79 1 9 HELIX 3 AA3 SER A 94 ALA A 101 1 8 HELIX 4 AA4 ARG A 114 MET A 122 1 9 HELIX 5 AA5 ILE A 127 ARG A 131 5 5 HELIX 6 AA6 GLY A 140 LEU A 152 1 13 HELIX 7 AA7 ALA A 153 ASN A 155 5 3 HELIX 8 AA8 PRO A 170 ILE A 180 1 11 HELIX 9 AA9 THR A 220 LEU A 225 1 6 HELIX 10 AB1 ASP A 227 TYR A 234 1 8 HELIX 11 AB2 THR B 43 GLY B 51 1 9 HELIX 12 AB3 PRO B 71 GLY B 79 1 9 HELIX 13 AB4 SER B 94 ALA B 101 1 8 HELIX 14 AB5 ARG B 114 MET B 122 1 9 HELIX 15 AB6 ILE B 127 ARG B 131 5 5 HELIX 16 AB7 GLY B 140 LEU B 152 1 13 HELIX 17 AB8 ALA B 153 ASN B 155 5 3 HELIX 18 AB9 PRO B 170 ILE B 180 1 11 HELIX 19 AC1 THR B 220 LEU B 225 1 6 HELIX 20 AC2 ASP B 227 TYR B 234 1 8 HELIX 21 AC3 ILE F 3 ARG F 33 1 31 HELIX 22 AC4 ILE F 34 ALA F 38 5 5 HELIX 23 AC5 LEU F 47 GLY F 55 1 9 HELIX 24 AC6 GLY F 55 ALA F 60 1 6 HELIX 25 AC7 LEU F 62 GLU F 82 1 21 HELIX 26 AC8 ILE F 85 ALA F 90 1 6 HELIX 27 AC9 ILE F 104 TRP F 119 1 16 HELIX 28 AD1 ALA F 120 ARG F 126 1 7 HELIX 29 AD2 VAL F 273 MET F 282 1 10 HELIX 30 AD3 SER F 298 LEU F 311 1 14 HELIX 31 AD4 LEU F 329 VAL F 334 1 6 HELIX 32 AD5 LEU F 336 LEU F 345 1 10 HELIX 33 AD6 VAL G 6 ILE G 15 1 10 HELIX 34 AD7 ILE G 15 LYS G 41 1 27 HELIX 35 AD8 GLY G 53 LEU G 58 1 6 HELIX 36 AD9 PRO G 61 ILE G 66 1 6 HELIX 37 AE1 PHE G 67 ARG G 86 1 20 HELIX 38 AE2 LEU G 89 ALA G 94 1 6 HELIX 39 AE3 THR G 98 GLY G 121 1 24 HELIX 40 AE4 VAL G 124 ARG G 133 1 10 HELIX 41 AE5 ILE G 251 VAL G 258 5 8 HELIX 42 AE6 GLN G 281 LEU G 293 1 13 HELIX 43 AE7 ARG G 308 GLY G 316 1 9 HELIX 44 AE8 PHE G 317 LEU G 322 1 6 HELIX 45 AE9 PRO G 336 ALA G 341 1 6 HELIX 46 AF1 LEU G 342 LEU G 356 1 15 SHEET 1 AA1 3 VAL A 19 VAL A 26 0 SHEET 2 AA1 3 LEU A 4 LYS A 11 -1 N LEU A 4 O VAL A 26 SHEET 3 AA1 3 ASN A 59 ILE A 62 -1 O ILE A 61 N THR A 5 SHEET 1 AA2 4 LEU A 191 ILE A 192 0 SHEET 2 AA2 4 VAL A 32 LEU A 35 1 N LEU A 34 O ILE A 192 SHEET 3 AA2 4 ARG A 206 VAL A 210 1 O VAL A 210 N LEU A 35 SHEET 4 AA2 4 LEU A 215 GLY A 219 -1 O ILE A 216 N ILE A 209 SHEET 1 AA3 2 ILE A 80 LEU A 83 0 SHEET 2 AA3 2 LYS A 157 LEU A 161 1 O LEU A 160 N LEU A 83 SHEET 1 AA4 3 VAL B 19 VAL B 26 0 SHEET 2 AA4 3 LEU B 4 LYS B 11 -1 N LEU B 4 O VAL B 26 SHEET 3 AA4 3 ASN B 59 ILE B 62 -1 O ILE B 61 N THR B 5 SHEET 1 AA5 4 LEU B 191 ILE B 192 0 SHEET 2 AA5 4 VAL B 32 LEU B 35 1 N LEU B 34 O ILE B 192 SHEET 3 AA5 4 ARG B 206 VAL B 210 1 O VAL B 210 N LEU B 35 SHEET 4 AA5 4 LEU B 215 GLY B 219 -1 O ILE B 216 N ILE B 209 SHEET 1 AA6 2 ILE B 80 LEU B 83 0 SHEET 2 AA6 2 LYS B 157 LEU B 161 1 O LEU B 160 N LEU B 83 SITE 1 AC1 15 TYR A 13 ARG A 16 VAL A 18 ASN A 38 SITE 2 AC1 15 GLY A 39 GLY A 41 LYS A 42 THR A 43 SITE 3 AC1 15 THR A 44 GLN A 85 SER B 137 SER B 139 SITE 4 AC1 15 GLY B 141 GLU B 142 ARG G 301 SITE 1 AC2 15 SER A 137 SER A 139 GLY A 141 GLU A 142 SITE 2 AC2 15 TYR B 13 ARG B 16 VAL B 18 ASN B 38 SITE 3 AC2 15 GLY B 39 GLY B 41 LYS B 42 THR B 43 SITE 4 AC2 15 THR B 44 GLN B 85 ARG F 292 SITE 1 AC3 1 LYS F 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000