HEADER TRANSFERASE 15-JUL-19 6SA1 TITLE POST CATALYTIC COMPLEX OF PRIM-POLC FROM MYCOBACTERIUM SMEGMATIS WITH TITLE 2 GAPPED DNA AND 3'-DUTP CAVEAT 6SA1 U3H A 403 HAS WRONG CHIRALITY AT ATOM C2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE LIGD, POLYMERASE DOMAIN; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(P*GP*CP*GP*AP*GP*CP*G)-3'); COMPND 7 CHAIN: B, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (5'-D(*CP*GP*CP*TP*CP*GP*CP*AP*AP*CP*GP*CP*A)-3'); COMPND 11 CHAIN: C, F; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: DNA (5'-D(P*TP*GP*CP*GP*(DUI))-3'); COMPND 15 CHAIN: H, G; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 VARIANT: ATCC 700084 / MC(2)155; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630; SOURCE 17 MOL_ID: 4; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630 KEYWDS NUCLEOTIDYL TRANSFERASE, POLYMERASE, BASE EXCISION REPAIR, KEYWDS 2 TRANSFERASE, PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.C.BRISSETT,A.J.DOHERTY REVDAT 2 24-JAN-24 6SA1 1 REMARK REVDAT 1 18-NOV-20 6SA1 0 JRNL AUTH N.C.BRISSETT,K.ZABRADY,P.PLOCINSKI,J.BIANCHI, JRNL AUTH 2 M.KORYCKA-MACHALA,A.BRZOSTEK,J.DZIADEK,A.J.DOHERTY JRNL TITL MOLECULAR BASIS FOR DNA REPAIR SYNTHESIS ON SHORT GAPS BY JRNL TITL 2 MYCOBACTERIAL PRIMASE-POLYMERASE C. JRNL REF NAT COMMUN V. 11 4196 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32826907 JRNL DOI 10.1038/S41467-020-18012-8 REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 88.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 112714 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 88.6600 - 6.2449 0.99 3842 225 0.1669 0.1606 REMARK 3 2 6.2449 - 4.9568 1.00 3680 206 0.1564 0.1875 REMARK 3 3 4.9568 - 4.3303 1.00 3662 183 0.1360 0.1537 REMARK 3 4 4.3303 - 3.9344 1.00 3648 177 0.1440 0.1766 REMARK 3 5 3.9344 - 3.6524 1.00 3581 209 0.1645 0.1807 REMARK 3 6 3.6524 - 3.4370 1.00 3610 168 0.1801 0.1890 REMARK 3 7 3.4370 - 3.2649 1.00 3596 185 0.1944 0.2401 REMARK 3 8 3.2649 - 3.1227 1.00 3577 199 0.2078 0.2074 REMARK 3 9 3.1227 - 3.0025 1.00 3579 176 0.2144 0.2258 REMARK 3 10 3.0025 - 2.8989 1.00 3567 207 0.2331 0.2758 REMARK 3 11 2.8989 - 2.8083 1.00 3535 202 0.2162 0.2591 REMARK 3 12 2.8083 - 2.7280 1.00 3553 184 0.2050 0.2245 REMARK 3 13 2.7280 - 2.6562 1.00 3551 181 0.1995 0.2218 REMARK 3 14 2.6562 - 2.5914 1.00 3548 191 0.2024 0.2345 REMARK 3 15 2.5914 - 2.5324 1.00 3582 174 0.2004 0.2297 REMARK 3 16 2.5324 - 2.4785 1.00 3532 187 0.1995 0.2569 REMARK 3 17 2.4785 - 2.4290 1.00 3563 178 0.2084 0.2736 REMARK 3 18 2.4290 - 2.3831 1.00 3514 197 0.2084 0.2190 REMARK 3 19 2.3831 - 2.3406 1.00 3555 172 0.2088 0.2419 REMARK 3 20 2.3406 - 2.3009 1.00 3520 196 0.2211 0.2366 REMARK 3 21 2.3009 - 2.2638 1.00 3540 188 0.2192 0.2464 REMARK 3 22 2.2638 - 2.2289 1.00 3510 197 0.2283 0.2540 REMARK 3 23 2.2289 - 2.1961 1.00 3543 177 0.2346 0.2495 REMARK 3 24 2.1961 - 2.1652 1.00 3581 162 0.2451 0.2468 REMARK 3 25 2.1652 - 2.1359 1.00 3466 186 0.2523 0.2705 REMARK 3 26 2.1359 - 2.1082 1.00 3538 209 0.2603 0.2860 REMARK 3 27 2.1082 - 2.0819 1.00 3533 176 0.2717 0.2370 REMARK 3 28 2.0819 - 2.0568 1.00 3556 160 0.2839 0.3130 REMARK 3 29 2.0568 - 2.0328 1.00 3474 199 0.2964 0.2968 REMARK 3 30 2.0328 - 2.0100 1.00 3542 185 0.3311 0.3164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6648 REMARK 3 ANGLE : 1.016 9261 REMARK 3 CHIRALITY : 0.059 1004 REMARK 3 PLANARITY : 0.007 1022 REMARK 3 DIHEDRAL : 20.458 3792 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0960 -10.3177 6.5796 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.5893 REMARK 3 T33: 0.4697 T12: 0.0022 REMARK 3 T13: 0.0109 T23: -0.1147 REMARK 3 L TENSOR REMARK 3 L11: 1.8419 L22: 2.0415 REMARK 3 L33: 4.2541 L12: -0.3673 REMARK 3 L13: 1.1700 L23: 0.3812 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: -0.1151 S13: -0.0881 REMARK 3 S21: -0.0928 S22: -0.1829 S23: 0.4557 REMARK 3 S31: 0.0590 S32: -0.6854 S33: 0.2370 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 87 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5402 -19.5730 8.2564 REMARK 3 T TENSOR REMARK 3 T11: 0.3833 T22: 0.5244 REMARK 3 T33: 0.4711 T12: -0.0729 REMARK 3 T13: 0.0543 T23: -0.0625 REMARK 3 L TENSOR REMARK 3 L11: 1.2900 L22: 1.5825 REMARK 3 L33: 2.7104 L12: -0.9053 REMARK 3 L13: 1.1350 L23: 0.3189 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.0665 S13: -0.2013 REMARK 3 S21: 0.0406 S22: -0.1661 S23: 0.4399 REMARK 3 S31: 0.3639 S32: -0.4531 S33: 0.0974 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0136 -16.1682 19.5615 REMARK 3 T TENSOR REMARK 3 T11: 0.3786 T22: 0.4769 REMARK 3 T33: 0.4274 T12: 0.0839 REMARK 3 T13: 0.0441 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 0.7030 L22: 1.9806 REMARK 3 L33: 2.6774 L12: -0.1482 REMARK 3 L13: 0.1307 L23: 1.8694 REMARK 3 S TENSOR REMARK 3 S11: -0.2101 S12: -0.2304 S13: -0.0654 REMARK 3 S21: -0.0107 S22: 0.0613 S23: 0.2754 REMARK 3 S31: -0.0164 S32: -0.2603 S33: 0.0377 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 149 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3378 -10.1134 24.5410 REMARK 3 T TENSOR REMARK 3 T11: 0.2818 T22: 0.4421 REMARK 3 T33: 0.3551 T12: 0.1013 REMARK 3 T13: 0.0409 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.9339 L22: 2.2481 REMARK 3 L33: 2.5164 L12: 0.6727 REMARK 3 L13: 0.6872 L23: -0.0986 REMARK 3 S TENSOR REMARK 3 S11: -0.1762 S12: -0.3039 S13: -0.0041 REMARK 3 S21: 0.1104 S22: 0.0589 S23: 0.0219 REMARK 3 S31: 0.0015 S32: -0.0341 S33: 0.1219 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 211 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6857 -12.7655 36.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.4688 T22: 0.6854 REMARK 3 T33: 0.3560 T12: 0.1295 REMARK 3 T13: 0.0666 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 8.0229 L22: 6.2769 REMARK 3 L33: 3.4005 L12: -2.6772 REMARK 3 L13: -4.0457 L23: 3.9262 REMARK 3 S TENSOR REMARK 3 S11: -0.5132 S12: -0.9632 S13: -0.3503 REMARK 3 S21: 0.9926 S22: 0.1113 S23: 0.3401 REMARK 3 S31: 0.5910 S32: -0.5302 S33: 0.5050 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5453 -9.8787 18.1502 REMARK 3 T TENSOR REMARK 3 T11: 0.4267 T22: 0.5733 REMARK 3 T33: 0.3818 T12: 0.0253 REMARK 3 T13: 0.0067 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 0.5483 L22: 2.1965 REMARK 3 L33: 1.5331 L12: 0.0912 REMARK 3 L13: 0.4887 L23: -0.8162 REMARK 3 S TENSOR REMARK 3 S11: -0.1139 S12: -0.3345 S13: -0.0289 REMARK 3 S21: 0.0558 S22: -0.0012 S23: 0.0976 REMARK 3 S31: 0.2048 S32: -0.5814 S33: 0.1607 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 256 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4524 -3.8964 17.4533 REMARK 3 T TENSOR REMARK 3 T11: 0.2805 T22: 0.3666 REMARK 3 T33: 0.3583 T12: 0.0415 REMARK 3 T13: 0.0116 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 1.6419 L22: 1.6842 REMARK 3 L33: 3.0092 L12: -0.4556 REMARK 3 L13: 0.3320 L23: -0.3732 REMARK 3 S TENSOR REMARK 3 S11: -0.0988 S12: 0.0220 S13: 0.1710 REMARK 3 S21: -0.1288 S22: -0.0856 S23: -0.0560 REMARK 3 S31: -0.1472 S32: -0.0768 S33: 0.2022 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5037 -27.5614 30.6904 REMARK 3 T TENSOR REMARK 3 T11: 0.8252 T22: 0.7351 REMARK 3 T33: 0.7187 T12: -0.0980 REMARK 3 T13: 0.2185 T23: 0.0705 REMARK 3 L TENSOR REMARK 3 L11: 8.2467 L22: 4.7104 REMARK 3 L33: 8.6278 L12: 2.5293 REMARK 3 L13: 4.9909 L23: 2.8551 REMARK 3 S TENSOR REMARK 3 S11: -0.2888 S12: 0.1739 S13: -1.6778 REMARK 3 S21: 0.0335 S22: 0.4124 S23: 0.4340 REMARK 3 S31: 1.7052 S32: -0.4523 S33: -0.0027 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.3867 -25.7629 6.8279 REMARK 3 T TENSOR REMARK 3 T11: 0.8627 T22: 0.9695 REMARK 3 T33: 1.3252 T12: -0.3505 REMARK 3 T13: -0.1452 T23: -0.0644 REMARK 3 L TENSOR REMARK 3 L11: 2.4370 L22: 8.3485 REMARK 3 L33: 3.6084 L12: 4.0323 REMARK 3 L13: -0.3383 L23: 1.6689 REMARK 3 S TENSOR REMARK 3 S11: -0.0407 S12: -0.2092 S13: -1.3077 REMARK 3 S21: -0.2040 S22: 0.2780 S23: 0.2552 REMARK 3 S31: 1.6249 S32: -1.0725 S33: -0.2334 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.0303 -25.6478 18.5117 REMARK 3 T TENSOR REMARK 3 T11: 0.9878 T22: 1.3517 REMARK 3 T33: 1.0030 T12: -0.3815 REMARK 3 T13: 0.1761 T23: 0.1472 REMARK 3 L TENSOR REMARK 3 L11: 2.6081 L22: 6.2027 REMARK 3 L33: 5.3801 L12: 0.2177 REMARK 3 L13: -3.4582 L23: 1.8579 REMARK 3 S TENSOR REMARK 3 S11: -0.0829 S12: -2.8244 S13: -0.9927 REMARK 3 S21: 0.3010 S22: -0.2117 S23: 0.7231 REMARK 3 S31: 1.4616 S32: -0.8037 S33: 0.3469 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 4 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9124 -25.6224 30.9397 REMARK 3 T TENSOR REMARK 3 T11: 1.5204 T22: 3.0031 REMARK 3 T33: 2.1213 T12: -0.0272 REMARK 3 T13: 0.6187 T23: 0.8034 REMARK 3 L TENSOR REMARK 3 L11: 3.2729 L22: 6.2943 REMARK 3 L33: 4.5390 L12: 0.8303 REMARK 3 L13: -2.7728 L23: -1.9987 REMARK 3 S TENSOR REMARK 3 S11: 1.9893 S12: 2.3532 S13: 3.3529 REMARK 3 S21: 0.7913 S22: 0.7066 S23: 4.8931 REMARK 3 S31: -1.5831 S32: 0.0160 S33: -2.3319 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 4 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.4553 18.3624 -2.6585 REMARK 3 T TENSOR REMARK 3 T11: 0.4172 T22: 0.7040 REMARK 3 T33: 0.5112 T12: 0.2420 REMARK 3 T13: -0.1054 T23: -0.1423 REMARK 3 L TENSOR REMARK 3 L11: 2.0924 L22: 2.5187 REMARK 3 L33: 2.8875 L12: 1.1287 REMARK 3 L13: -0.1601 L23: 0.5511 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: -0.1463 S13: 0.2053 REMARK 3 S21: -0.0245 S22: -0.1008 S23: 0.4267 REMARK 3 S31: -0.1817 S32: -0.5178 S33: 0.1528 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 87 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.7532 25.2489 -11.7494 REMARK 3 T TENSOR REMARK 3 T11: 0.5696 T22: 0.6006 REMARK 3 T33: 0.5153 T12: 0.2470 REMARK 3 T13: -0.1299 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 1.1832 L22: 0.8501 REMARK 3 L33: 1.5094 L12: -0.3047 REMARK 3 L13: 0.0288 L23: 0.4912 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: 0.0376 S13: 0.1177 REMARK 3 S21: -0.2064 S22: -0.0759 S23: 0.2121 REMARK 3 S31: -0.4200 S32: -0.4287 S33: 0.0356 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 149 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8958 14.3750 -22.2100 REMARK 3 T TENSOR REMARK 3 T11: 0.4484 T22: 0.4433 REMARK 3 T33: 0.4131 T12: 0.1781 REMARK 3 T13: -0.1112 T23: -0.1121 REMARK 3 L TENSOR REMARK 3 L11: 1.6129 L22: 1.4614 REMARK 3 L33: 2.0125 L12: 0.4106 REMARK 3 L13: -0.6673 L23: -0.1253 REMARK 3 S TENSOR REMARK 3 S11: -0.0334 S12: 0.1836 S13: -0.0362 REMARK 3 S21: -0.2325 S22: -0.0274 S23: 0.1178 REMARK 3 S31: -0.1471 S32: -0.2990 S33: 0.0757 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 312 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.5080 33.2238 -31.4510 REMARK 3 T TENSOR REMARK 3 T11: 1.1012 T22: 0.8026 REMARK 3 T33: 0.7452 T12: 0.3291 REMARK 3 T13: -0.2081 T23: -0.1277 REMARK 3 L TENSOR REMARK 3 L11: 6.3186 L22: 1.9790 REMARK 3 L33: 5.1349 L12: -1.8030 REMARK 3 L13: -3.4212 L23: 1.4499 REMARK 3 S TENSOR REMARK 3 S11: -0.1318 S12: -0.5251 S13: 1.2657 REMARK 3 S21: -0.2073 S22: 0.2294 S23: 0.1648 REMARK 3 S31: -1.3508 S32: -0.1649 S33: 0.2296 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -60.0270 33.5788 -2.7607 REMARK 3 T TENSOR REMARK 3 T11: 1.0082 T22: 1.2273 REMARK 3 T33: 1.3154 T12: 0.6855 REMARK 3 T13: 0.0964 T23: -0.1787 REMARK 3 L TENSOR REMARK 3 L11: 3.5062 L22: 4.5388 REMARK 3 L33: 0.1650 L12: -1.7499 REMARK 3 L13: -0.3069 L23: 0.8678 REMARK 3 S TENSOR REMARK 3 S11: 0.3146 S12: 0.3419 S13: 1.2677 REMARK 3 S21: -0.0998 S22: -0.1677 S23: 0.4531 REMARK 3 S31: -1.2398 S32: -0.9041 S33: -0.1793 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.2105 32.5469 -17.7119 REMARK 3 T TENSOR REMARK 3 T11: 1.4427 T22: 1.9171 REMARK 3 T33: 1.3941 T12: 0.7449 REMARK 3 T13: -0.2361 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 4.6830 L22: 3.0628 REMARK 3 L33: 3.3984 L12: 0.8949 REMARK 3 L13: -0.5647 L23: 1.3512 REMARK 3 S TENSOR REMARK 3 S11: -0.4239 S12: 1.9294 S13: 0.5204 REMARK 3 S21: -0.5941 S22: -0.2627 S23: 1.4519 REMARK 3 S31: -0.4016 S32: -0.6071 S33: 0.6376 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.1272 34.4077 -27.9012 REMARK 3 T TENSOR REMARK 3 T11: 2.0454 T22: 2.1988 REMARK 3 T33: 2.3565 T12: 0.6534 REMARK 3 T13: -0.5489 T23: 0.5012 REMARK 3 L TENSOR REMARK 3 L11: 3.4345 L22: 3.3197 REMARK 3 L33: 8.0489 L12: 2.4008 REMARK 3 L13: -2.9104 L23: 0.9746 REMARK 3 S TENSOR REMARK 3 S11: 1.3029 S12: 1.4308 S13: 0.8066 REMARK 3 S21: 0.2586 S22: -0.1610 S23: 2.4103 REMARK 3 S31: -1.0735 S32: -0.2789 S33: -0.9635 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 3 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN D AND (RESID 4 THROUGH 323 OR REMARK 3 (RESID 324 THROUGH 325 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 326 THROUGH 331)) REMARK 3 ATOM PAIRS NUMBER : 3202 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN C REMARK 3 SELECTION : (CHAIN F AND RESID 1 THROUGH 13) REMARK 3 ATOM PAIRS NUMBER : 252 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 3 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : CHAIN E REMARK 3 ATOM PAIRS NUMBER : 134 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : KB BIMORPH MIRROR PAIR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.7.3 REMARK 200 DATA SCALING SOFTWARE : XIA2 0.5.438 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 112811 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 99.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.17 REMARK 200 STARTING MODEL: 5OP0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM SODIUM CACODYLATE, 2M AMMONIUM REMARK 280 SULPHATE, 10MM MANGANESE CHLORIDE, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 285.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 99.12500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 99.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 99.12500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 99.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 99.12500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 99.12500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 99.12500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 99.12500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 684 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 ALA A 3 REMARK 465 VAL A 332 REMARK 465 GLN A 333 REMARK 465 PRO A 334 REMARK 465 SER A 335 REMARK 465 LYS A 336 REMARK 465 LYS A 337 REMARK 465 VAL A 338 REMARK 465 ALA A 339 REMARK 465 GLU A 340 REMARK 465 HIS A 341 REMARK 465 TRP A 342 REMARK 465 ASP A 343 REMARK 465 GLU A 344 REMARK 465 GLN A 345 REMARK 465 GLY A 346 REMARK 465 ASN A 347 REMARK 465 ARG A 348 REMARK 465 LYS A 349 REMARK 465 GLN A 350 REMARK 465 DC C 14 REMARK 465 DG C 15 REMARK 465 DC H -1 REMARK 465 DG H 0 REMARK 465 MET D 1 REMARK 465 MET D 2 REMARK 465 ALA D 3 REMARK 465 SER D 335 REMARK 465 LYS D 336 REMARK 465 LYS D 337 REMARK 465 VAL D 338 REMARK 465 ALA D 339 REMARK 465 GLU D 340 REMARK 465 HIS D 341 REMARK 465 TRP D 342 REMARK 465 ASP D 343 REMARK 465 GLU D 344 REMARK 465 GLN D 345 REMARK 465 GLY D 346 REMARK 465 ASN D 347 REMARK 465 ARG D 348 REMARK 465 LYS D 349 REMARK 465 GLN D 350 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 MET A 325 CG SD CE REMARK 470 GLU A 328 CG CD OE1 OE2 REMARK 470 GLU D 328 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN D 295 O HOH D 501 1.86 REMARK 500 OE1 GLU D 136 O HOH D 502 1.88 REMARK 500 O HOH D 502 O HOH D 505 1.89 REMARK 500 O HOH A 656 O HOH A 668 1.95 REMARK 500 O ARG D 239 O HOH D 503 1.98 REMARK 500 O11 PPV D 403 O HOH D 504 1.99 REMARK 500 NH2 ARG D 138 O HOH D 505 2.10 REMARK 500 O HOH A 597 O HOH A 665 2.13 REMARK 500 O HOH A 617 O HOH A 666 2.16 REMARK 500 O HOH D 503 O HOH D 633 2.18 REMARK 500 OE2 GLU D 132 O HOH D 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 1 P DG B 1 OP3 -0.113 REMARK 500 DG E 1 P DG E 1 OP3 -0.116 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG C 11 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 L2B H 5 O3' - P - OP2 ANGL. DEV. = 42.3 DEGREES REMARK 500 L2B H 5 O3' - P - OP1 ANGL. DEV. = -27.8 DEGREES REMARK 500 DC F 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC F 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 L2B G 7 O3' - P - OP2 ANGL. DEV. = -18.4 DEGREES REMARK 500 L2B G 7 O3' - P - OP1 ANGL. DEV. = 28.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 189 48.52 -76.12 REMARK 500 PRO A 323 -177.16 -67.45 REMARK 500 PRO D 189 49.34 -76.83 REMARK 500 PRO D 323 -151.40 -69.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 105 N REMARK 620 2 THR A 105 OG1 67.9 REMARK 620 3 SER A 109 OG 83.9 151.7 REMARK 620 4 HOH A 517 O 103.2 96.3 87.9 REMARK 620 5 HOH A 549 O 168.2 120.2 88.0 85.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 140 OD2 REMARK 620 2 ASP A 142 OD2 106.6 REMARK 620 3 ASP A 231 OD2 101.3 115.4 REMARK 620 4 U3H A 403 O1A 74.9 87.2 156.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 140 OD1 REMARK 620 2 U3H A 403 O1A 113.6 REMARK 620 3 U3H A 403 O2G 164.2 78.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 140 OD2 REMARK 620 2 ASP D 142 OD2 113.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 140 OD1 REMARK 620 2 PPV D 403 O21 109.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue U3H A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PPV D 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 D 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DG G 6 and L2B G REMARK 800 7 DBREF 6SA1 A 1 350 UNP A0R5T1 A0R5T1_MYCS2 1 350 DBREF 6SA1 B 1 7 PDB 6SA1 6SA1 1 7 DBREF 6SA1 C 1 15 PDB 6SA1 6SA1 1 15 DBREF 6SA1 H -1 5 PDB 6SA1 6SA1 -1 5 DBREF 6SA1 D 1 350 UNP A0R5T1 A0R5T1_MYCS2 1 350 DBREF 6SA1 E 1 7 PDB 6SA1 6SA1 1 7 DBREF 6SA1 F 1 15 PDB 6SA1 6SA1 1 15 DBREF 6SA1 G 1 7 PDB 6SA1 6SA1 1 7 SEQRES 1 A 350 MET MET ALA SER ALA ALA THR GLU LEU ASP VAL ASP GLY SEQRES 2 A 350 VAL LYS VAL ARG PHE THR ASN PRO ASP LYS VAL TYR PHE SEQRES 3 A 350 PRO LYS LEU GLY LYS ASN GLY THR LYS GLY LYS LEU VAL SEQRES 4 A 350 GLU TYR TYR LEU SER VAL ALA SER GLY PRO MET LEU ALA SEQRES 5 A 350 LEU LEU ARG ASP ARG PRO VAL HIS LEU GLN ARG PHE PRO SEQRES 6 A 350 ASP GLY ILE GLU GLY GLU GLU ILE TYR GLN LYS ARG VAL SEQRES 7 A 350 PRO GLN LYS HIS PRO ASP TYR LEU GLU THR CYS VAL VAL SEQRES 8 A 350 THR PHE PRO SER GLY ARG THR ALA ASP ALA LEU LYS ILE SEQRES 9 A 350 THR HIS PRO SER SER ILE ILE TRP ALA ALA GLN MET GLY SEQRES 10 A 350 THR VAL THR LEU HIS PRO TRP GLN VAL ARG CYS PRO ASP SEQRES 11 A 350 THR GLU HIS PRO ASP GLU LEU ARG VAL ASP LEU ASP PRO SEQRES 12 A 350 GLN PRO GLY THR GLY PHE LYS GLU ALA ARG THR VAL ALA SEQRES 13 A 350 CYS ASP VAL LEU LYS PRO LEU LEU ASP GLU LEU GLY LEU SEQRES 14 A 350 VAL GLY TYR PRO LYS THR SER GLY GLY ARG GLY VAL HIS SEQRES 15 A 350 VAL PHE LEU ARG ILE LYS PRO GLN TRP ASP PHE ILE GLU SEQRES 16 A 350 VAL ARG ARG ALA GLY ILE ALA LEU ALA ARG GLU VAL GLU SEQRES 17 A 350 ARG ARG ALA PRO ASP ALA VAL THR THR SER TRP TRP LYS SEQRES 18 A 350 GLU GLU ARG GLY GLU ARG LEU PHE ILE ASP TYR ASN GLN SEQRES 19 A 350 ASN ALA ARG ASP ARG THR PHE ALA SER ALA TYR SER VAL SEQRES 20 A 350 ARG LYS THR PRO ILE ALA THR VAL SER MET PRO LEU SER SEQRES 21 A 350 TRP ASP GLU LEU ARG ASN ALA ASP PRO ASP ASP TYR THR SEQRES 22 A 350 MET ASN THR VAL PRO ASP LEU LEU ALA GLY ARG ASP ASP SEQRES 23 A 350 PRO TRP ALA ASP ILE ASP SER VAL GLN GLN SER LEU GLY SEQRES 24 A 350 PRO LEU LEU ASP LEU VAL ALA ALA ASP GLU GLU ARG GLY SEQRES 25 A 350 LEU GLY ASP LEU PRO TYR PRO PRO ASN TYR PRO LYS MET SEQRES 26 A 350 PRO GLY GLU PRO PRO ARG VAL GLN PRO SER LYS LYS VAL SEQRES 27 A 350 ALA GLU HIS TRP ASP GLU GLN GLY ASN ARG LYS GLN SEQRES 1 B 7 DG DC DG DA DG DC DG SEQRES 1 C 15 DC DG DC DT DC DG DC DA DA DC DG DC DA SEQRES 2 C 15 DC DG SEQRES 1 H 7 DC DG DT DG DC DG L2B SEQRES 1 D 350 MET MET ALA SER ALA ALA THR GLU LEU ASP VAL ASP GLY SEQRES 2 D 350 VAL LYS VAL ARG PHE THR ASN PRO ASP LYS VAL TYR PHE SEQRES 3 D 350 PRO LYS LEU GLY LYS ASN GLY THR LYS GLY LYS LEU VAL SEQRES 4 D 350 GLU TYR TYR LEU SER VAL ALA SER GLY PRO MET LEU ALA SEQRES 5 D 350 LEU LEU ARG ASP ARG PRO VAL HIS LEU GLN ARG PHE PRO SEQRES 6 D 350 ASP GLY ILE GLU GLY GLU GLU ILE TYR GLN LYS ARG VAL SEQRES 7 D 350 PRO GLN LYS HIS PRO ASP TYR LEU GLU THR CYS VAL VAL SEQRES 8 D 350 THR PHE PRO SER GLY ARG THR ALA ASP ALA LEU LYS ILE SEQRES 9 D 350 THR HIS PRO SER SER ILE ILE TRP ALA ALA GLN MET GLY SEQRES 10 D 350 THR VAL THR LEU HIS PRO TRP GLN VAL ARG CYS PRO ASP SEQRES 11 D 350 THR GLU HIS PRO ASP GLU LEU ARG VAL ASP LEU ASP PRO SEQRES 12 D 350 GLN PRO GLY THR GLY PHE LYS GLU ALA ARG THR VAL ALA SEQRES 13 D 350 CYS ASP VAL LEU LYS PRO LEU LEU ASP GLU LEU GLY LEU SEQRES 14 D 350 VAL GLY TYR PRO LYS THR SER GLY GLY ARG GLY VAL HIS SEQRES 15 D 350 VAL PHE LEU ARG ILE LYS PRO GLN TRP ASP PHE ILE GLU SEQRES 16 D 350 VAL ARG ARG ALA GLY ILE ALA LEU ALA ARG GLU VAL GLU SEQRES 17 D 350 ARG ARG ALA PRO ASP ALA VAL THR THR SER TRP TRP LYS SEQRES 18 D 350 GLU GLU ARG GLY GLU ARG LEU PHE ILE ASP TYR ASN GLN SEQRES 19 D 350 ASN ALA ARG ASP ARG THR PHE ALA SER ALA TYR SER VAL SEQRES 20 D 350 ARG LYS THR PRO ILE ALA THR VAL SER MET PRO LEU SER SEQRES 21 D 350 TRP ASP GLU LEU ARG ASN ALA ASP PRO ASP ASP TYR THR SEQRES 22 D 350 MET ASN THR VAL PRO ASP LEU LEU ALA GLY ARG ASP ASP SEQRES 23 D 350 PRO TRP ALA ASP ILE ASP SER VAL GLN GLN SER LEU GLY SEQRES 24 D 350 PRO LEU LEU ASP LEU VAL ALA ALA ASP GLU GLU ARG GLY SEQRES 25 D 350 LEU GLY ASP LEU PRO TYR PRO PRO ASN TYR PRO LYS MET SEQRES 26 D 350 PRO GLY GLU PRO PRO ARG VAL GLN PRO SER LYS LYS VAL SEQRES 27 D 350 ALA GLU HIS TRP ASP GLU GLN GLY ASN ARG LYS GLN SEQRES 1 E 7 DG DC DG DA DG DC DG SEQRES 1 F 15 DC DG DC DT DC DG DC DA DA DC DG DC DA SEQRES 2 F 15 DC DG SEQRES 1 G 7 DC DG DT DG DC DG L2B HET L2B H 5 19 HET L2B G 7 19 HET MN A 401 1 HET MN A 402 1 HET U3H A 403 39 HET SO4 A 404 5 HET MG A 405 1 HET EDO A 406 10 HET EDO A 407 10 HET EDO A 408 10 HET EDO A 409 10 HET EDO A 410 10 HET MN D 401 1 HET MN D 402 1 HET PPV D 403 9 HET SO4 D 404 5 HET EDO D 405 10 HET EDO D 406 10 HET EDO D 407 10 HET EDO D 408 10 HET EDO D 409 10 HET EDO D 410 10 HETNAM L2B 3'-DEOXYURIDINE-5'-MONOPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM U3H 3'-DEOXY-URIDINE 5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PPV PYROPHOSPHATE HETSYN L2B [(2~{S},4~{R},5~{R})-5-[2,4-BIS(OXIDANYLIDENE) HETSYN 2 L2B PYRIMIDIN-1-YL]-4-OXIDANYL-OXOLAN-2-YL]METHYL HETSYN 3 L2B DIHYDROGEN PHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 L2B 2(C9 H13 N2 O8 P) FORMUL 9 MN 4(MN 2+) FORMUL 11 U3H C9 H17 N2 O14 P3 FORMUL 12 SO4 2(O4 S 2-) FORMUL 13 MG MG 2+ FORMUL 14 EDO 11(C2 H6 O2) FORMUL 21 PPV H4 O7 P2 FORMUL 29 HOH *362(H2 O) HELIX 1 AA1 PHE A 26 GLY A 33 5 8 HELIX 2 AA2 THR A 34 SER A 47 1 14 HELIX 3 AA3 GLY A 48 ARG A 55 1 8 HELIX 4 AA4 HIS A 106 MET A 116 1 11 HELIX 5 AA5 GLY A 148 VAL A 159 1 12 HELIX 6 AA6 VAL A 159 GLY A 168 1 10 HELIX 7 AA7 ASP A 192 ALA A 211 1 20 HELIX 8 AA8 TRP A 220 ARG A 224 5 5 HELIX 9 AA9 TYR A 232 ALA A 236 5 5 HELIX 10 AB1 SER A 260 ARG A 265 1 6 HELIX 11 AB2 ASN A 266 ALA A 267 5 2 HELIX 12 AB3 ASP A 268 TYR A 272 5 5 HELIX 13 AB4 THR A 276 ALA A 282 1 7 HELIX 14 AB5 ASP A 290 VAL A 294 5 5 HELIX 15 AB6 LEU A 298 ARG A 311 1 14 HELIX 16 AB7 PHE D 26 GLY D 33 5 8 HELIX 17 AB8 THR D 34 ALA D 46 1 13 HELIX 18 AB9 GLY D 48 ARG D 55 1 8 HELIX 19 AC1 HIS D 106 MET D 116 1 11 HELIX 20 AC2 GLY D 148 VAL D 159 1 12 HELIX 21 AC3 VAL D 159 GLY D 168 1 10 HELIX 22 AC4 ASP D 192 ALA D 211 1 20 HELIX 23 AC5 TRP D 220 ARG D 224 5 5 HELIX 24 AC6 TYR D 232 ALA D 236 5 5 HELIX 25 AC7 SER D 260 ASN D 266 1 7 HELIX 26 AC8 ALA D 267 TYR D 272 5 6 HELIX 27 AC9 THR D 276 ALA D 282 1 7 HELIX 28 AD1 ASP D 290 VAL D 294 5 5 HELIX 29 AD2 LEU D 298 GLY D 312 1 15 SHEET 1 AA1 2 THR A 7 VAL A 11 0 SHEET 2 AA1 2 VAL A 14 PHE A 18 -1 O VAL A 14 N VAL A 11 SHEET 1 AA2 4 ILE A 73 GLN A 75 0 SHEET 2 AA2 4 PRO A 58 ARG A 63 -1 N ARG A 63 O ILE A 73 SHEET 3 AA2 4 THR A 98 LYS A 103 -1 O LEU A 102 N VAL A 59 SHEET 4 AA2 4 GLU A 87 THR A 92 -1 N CYS A 89 O ALA A 101 SHEET 1 AA3 3 ILE A 73 GLN A 75 0 SHEET 2 AA3 3 PRO A 58 ARG A 63 -1 N ARG A 63 O ILE A 73 SHEET 3 AA3 3 THR A 118 PRO A 123 -1 O THR A 120 N GLN A 62 SHEET 1 AA4 5 TYR A 172 THR A 175 0 SHEET 2 AA4 5 VAL A 181 ARG A 186 -1 O HIS A 182 N LYS A 174 SHEET 3 AA4 5 GLU A 136 PRO A 143 -1 N LEU A 141 O VAL A 181 SHEET 4 AA4 5 LEU A 228 ILE A 230 -1 O PHE A 229 N ASP A 142 SHEET 5 AA4 5 VAL A 215 THR A 216 1 N THR A 216 O LEU A 228 SHEET 1 AA5 2 THR D 7 VAL D 11 0 SHEET 2 AA5 2 VAL D 14 PHE D 18 -1 O VAL D 14 N VAL D 11 SHEET 1 AA6 4 ILE D 73 GLN D 75 0 SHEET 2 AA6 4 PRO D 58 ARG D 63 -1 N LEU D 61 O GLN D 75 SHEET 3 AA6 4 THR D 98 LYS D 103 -1 O LEU D 102 N VAL D 59 SHEET 4 AA6 4 GLU D 87 THR D 92 -1 N CYS D 89 O ALA D 101 SHEET 1 AA7 3 ILE D 73 GLN D 75 0 SHEET 2 AA7 3 PRO D 58 ARG D 63 -1 N LEU D 61 O GLN D 75 SHEET 3 AA7 3 THR D 118 PRO D 123 -1 O HIS D 122 N HIS D 60 SHEET 1 AA8 5 TYR D 172 THR D 175 0 SHEET 2 AA8 5 VAL D 181 ARG D 186 -1 O HIS D 182 N LYS D 174 SHEET 3 AA8 5 GLU D 136 PRO D 143 -1 N LEU D 141 O VAL D 181 SHEET 4 AA8 5 LEU D 228 ILE D 230 -1 O PHE D 229 N ASP D 142 SHEET 5 AA8 5 VAL D 215 THR D 216 1 N THR D 216 O LEU D 228 SSBOND 1 CYS A 89 CYS A 128 1555 1555 2.03 SSBOND 2 CYS D 89 CYS D 128 1555 1555 2.04 LINK O3' DG H 4 P L2B H 5 1555 1555 1.56 LINK O3' DG G 6 P L2B G 7 1555 1555 1.56 LINK N THR A 105 MG MG A 405 1555 1555 2.81 LINK OG1 THR A 105 MG MG A 405 1555 1555 2.38 LINK OG SER A 109 MG MG A 405 1555 1555 2.93 LINK OD2 ASP A 140 MN MN A 401 1555 1555 2.77 LINK OD1 ASP A 140 MN MN A 402 1555 1555 2.33 LINK OD2 ASP A 142 MN MN A 401 1555 1555 2.66 LINK OD2 ASP A 231 MN MN A 401 1555 1555 2.75 LINK MN MN A 401 O1A U3H A 403 1555 1555 2.46 LINK MN MN A 402 O1A U3H A 403 1555 1555 2.62 LINK MN MN A 402 O2G U3H A 403 1555 1555 2.73 LINK MG MG A 405 O HOH A 517 1555 1555 2.75 LINK MG MG A 405 O HOH A 549 1555 1555 2.81 LINK OD2 ASP D 140 MN MN D 401 1555 1555 2.68 LINK OD1 ASP D 140 MN MN D 402 1555 1555 2.61 LINK OD2 ASP D 142 MN MN D 401 1555 1555 2.65 LINK MN MN D 402 O21 PPV D 403 1555 1555 2.69 CISPEP 1 CYS A 128 PRO A 129 0 -0.19 CISPEP 2 CYS D 128 PRO D 129 0 -0.09 SITE 1 AC1 4 ASP A 140 ASP A 142 ASP A 231 U3H A 403 SITE 1 AC2 3 ASP A 140 ASP A 142 U3H A 403 SITE 1 AC3 20 HIS A 122 ASP A 140 ASP A 142 SER A 176 SITE 2 AC3 20 GLY A 178 ARG A 179 GLY A 180 HIS A 182 SITE 3 AC3 20 GLN A 234 ASP A 238 ARG A 239 THR A 240 SITE 4 AC3 20 PHE A 241 ALA A 242 ARG A 248 MN A 401 SITE 5 AC3 20 MN A 402 HOH A 610 DA C 8 L2B H 5 SITE 1 AC4 4 ALA A 282 GLY A 283 HOH A 559 HOH A 619 SITE 1 AC5 6 LYS A 103 THR A 105 HIS A 106 SER A 109 SITE 2 AC5 6 HOH A 517 HOH A 549 SITE 1 AC6 6 LYS A 161 VAL A 170 GLY A 171 TYR A 172 SITE 2 AC6 6 TRP A 261 HOH A 504 SITE 1 AC7 3 ALA A 5 ALA A 6 ARG A 17 SITE 1 AC8 3 PRO A 83 ASP A 84 HOH A 511 SITE 1 AC9 1 ARG A 97 SITE 1 AD1 3 PHE A 149 LYS A 150 ARG A 179 SITE 1 AD2 3 ASP D 140 ASP D 142 ASP D 231 SITE 1 AD3 3 ASP D 140 ASP D 142 PPV D 403 SITE 1 AD4 8 SER D 176 GLY D 178 ARG D 179 GLY D 180 SITE 2 AD4 8 HIS D 182 ARG D 248 MN D 402 HOH D 504 SITE 1 AD5 2 ARG D 311 HOH D 514 SITE 1 AD6 4 LYS D 161 SER D 260 TRP D 261 ASP D 262 SITE 1 AD7 4 GLU D 263 TYR D 272 ARG D 284 HOH D 561 SITE 1 AD8 3 GLY D 148 PHE D 149 LYS D 150 SITE 1 AD9 2 ALA D 6 ARG D 17 SITE 1 AE1 4 GLN D 62 ARG D 248 LYS D 249 HOH D 566 SITE 1 AE2 8 PRO D 49 LEU D 53 ASP D 286 TRP D 288 SITE 2 AE2 8 ALA D 289 ILE D 291 HOH D 508 HOH D 553 SITE 1 AE3 6 ASN D 321 DA F 8 DA F 9 DC F 10 SITE 2 AE3 6 DG F 11 DC G 5 CRYST1 198.250 198.250 85.300 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005044 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005044 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011723 0.00000