HEADER HYDROLASE 21-JUL-19 6SBK TITLE THERMOLYSIN IN COMPLEX WITH FRAGMENT J13 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOLYSIN; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: THERMOSTABLE NEUTRAL PROTEINASE; COMPND 5 EC: 3.4.24.27; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: BACILLUS THERMOPROTEOLYTICUS; SOURCE 4 ORGANISM_TAXID: 1427 KEYWDS THERMOLYSIN, HYDROLASE, METALLOPROTEASE, FRAGMENT COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.MAGARI,A.HEINE,G.KLEBE REVDAT 2 15-MAY-24 6SBK 1 REMARK REVDAT 1 26-AUG-20 6SBK 0 JRNL AUTH F.MAGARI,A.HEINE,G.KLEBE JRNL TITL THERMOLYSIN IN COMPLEX WITH FRAGMENT J13 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 54619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2731 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2800 - 4.0200 1.00 2875 152 0.1786 0.1905 REMARK 3 2 4.0200 - 3.1900 1.00 2699 142 0.1520 0.1671 REMARK 3 3 3.1900 - 2.7900 1.00 2670 140 0.1473 0.1741 REMARK 3 4 2.7900 - 2.5300 1.00 2653 140 0.1404 0.1594 REMARK 3 5 2.5300 - 2.3500 1.00 2624 138 0.1341 0.1307 REMARK 3 6 2.3500 - 2.2100 1.00 2599 137 0.1277 0.1538 REMARK 3 7 2.2100 - 2.1000 1.00 2602 137 0.1373 0.1498 REMARK 3 8 2.1000 - 2.0100 1.00 2589 136 0.1381 0.1676 REMARK 3 9 2.0100 - 1.9300 1.00 2582 136 0.1410 0.1952 REMARK 3 10 1.9300 - 1.8600 0.99 2577 136 0.1438 0.1571 REMARK 3 11 1.8600 - 1.8100 0.99 2566 135 0.1458 0.1633 REMARK 3 12 1.8100 - 1.7500 0.99 2577 135 0.1375 0.1640 REMARK 3 13 1.7500 - 1.7100 0.99 2538 134 0.1456 0.1417 REMARK 3 14 1.7100 - 1.6700 0.99 2556 134 0.1497 0.1554 REMARK 3 15 1.6700 - 1.6300 0.99 2539 134 0.1475 0.1878 REMARK 3 16 1.6300 - 1.5900 0.99 2544 134 0.1522 0.1815 REMARK 3 17 1.5900 - 1.5600 0.99 2523 133 0.1595 0.1876 REMARK 3 18 1.5600 - 1.5300 0.98 2542 134 0.1677 0.1854 REMARK 3 19 1.5300 - 1.5100 0.98 2507 131 0.1794 0.2118 REMARK 3 20 1.5100 - 1.4800 0.98 2526 133 0.2033 0.2417 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.117 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.651 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2581 REMARK 3 ANGLE : 0.750 3523 REMARK 3 CHIRALITY : 0.069 369 REMARK 3 PLANARITY : 0.004 481 REMARK 3 DIHEDRAL : 16.058 895 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8938 31.3519 2.9845 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: 0.0518 REMARK 3 T33: -0.0033 T12: 0.0227 REMARK 3 T13: 0.0195 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 0.3324 L22: 0.1474 REMARK 3 L33: 0.1485 L12: 0.0960 REMARK 3 L13: 0.0437 L23: -0.0469 REMARK 3 S TENSOR REMARK 3 S11: 0.0812 S12: 0.0578 S13: -0.0911 REMARK 3 S21: 0.0287 S22: -0.0263 S23: -0.0409 REMARK 3 S31: -0.0265 S32: -0.0031 S33: 0.1893 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 123 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8842 35.1732 -4.3540 REMARK 3 T TENSOR REMARK 3 T11: 0.0999 T22: 0.1342 REMARK 3 T33: 0.1046 T12: 0.0189 REMARK 3 T13: 0.0133 T23: -0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.0179 L22: 0.0095 REMARK 3 L33: 0.0045 L12: 0.0109 REMARK 3 L13: 0.0092 L23: 0.0015 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: 0.0411 S13: 0.0419 REMARK 3 S21: -0.0318 S22: 0.0260 S23: -0.0197 REMARK 3 S31: -0.0184 S32: -0.0072 S33: 0.0074 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 159 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1088 28.9771 -6.1673 REMARK 3 T TENSOR REMARK 3 T11: 0.0735 T22: 0.1089 REMARK 3 T33: 0.0895 T12: 0.0144 REMARK 3 T13: 0.0050 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.0013 L22: 0.0130 REMARK 3 L33: 0.0113 L12: -0.0007 REMARK 3 L13: -0.0024 L23: 0.0128 REMARK 3 S TENSOR REMARK 3 S11: 0.0224 S12: -0.0209 S13: -0.0320 REMARK 3 S21: -0.0289 S22: -0.0261 S23: 0.0497 REMARK 3 S31: -0.0117 S32: -0.0086 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 181 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4953 35.2797 5.3527 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1832 REMARK 3 T33: 0.1367 T12: 0.0117 REMARK 3 T13: 0.0269 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.0106 L22: 0.0067 REMARK 3 L33: 0.0054 L12: -0.0003 REMARK 3 L13: -0.0078 L23: 0.0057 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.0489 S13: 0.0294 REMARK 3 S21: 0.0216 S22: -0.0401 S23: 0.0091 REMARK 3 S31: -0.0367 S32: -0.0836 S33: -0.0015 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 212 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9905 40.5202 -12.0984 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1493 REMARK 3 T33: 0.1622 T12: 0.0440 REMARK 3 T13: -0.0200 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.0065 L22: 0.0132 REMARK 3 L33: 0.0163 L12: 0.0035 REMARK 3 L13: 0.0088 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: 0.0001 S13: 0.0164 REMARK 3 S21: -0.0444 S22: -0.0128 S23: 0.0367 REMARK 3 S31: -0.1116 S32: -0.0814 S33: -0.0049 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 233 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2906 22.6135 -11.1824 REMARK 3 T TENSOR REMARK 3 T11: 0.1080 T22: 0.1569 REMARK 3 T33: 0.1658 T12: -0.0026 REMARK 3 T13: -0.0022 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.0354 L22: 0.0457 REMARK 3 L33: 0.0407 L12: 0.0122 REMARK 3 L13: 0.0344 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0685 S12: -0.0211 S13: -0.1499 REMARK 3 S21: -0.0731 S22: -0.0406 S23: 0.0951 REMARK 3 S31: 0.0671 S32: -0.1293 S33: 0.0048 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 297 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.5222 19.4975 -13.0452 REMARK 3 T TENSOR REMARK 3 T11: 0.1095 T22: 0.1766 REMARK 3 T33: 0.2240 T12: -0.0313 REMARK 3 T13: -0.0274 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 0.0111 L22: 0.0027 REMARK 3 L33: 0.0019 L12: -0.0021 REMARK 3 L13: -0.0016 L23: -0.0001 REMARK 3 S TENSOR REMARK 3 S11: 0.0454 S12: 0.0120 S13: -0.0466 REMARK 3 S21: 0.0088 S22: -0.0060 S23: 0.0052 REMARK 3 S31: 0.0159 S32: -0.1222 S33: 0.0080 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SBK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54619 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 46.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 20.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47800 REMARK 200 FOR SHELL : 3.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS/HCL, 1.9 M CSCL, 50% DMSO, REMARK 280 PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.09100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.18200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.63650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.72750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.54550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.09100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.18200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 107.72750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.63650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.54550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH E 708 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 728 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE E 1 CG2 REMARK 470 GLN E 128 CG CD OE1 NE2 REMARK 470 GLN E 158 CD OE1 NE2 REMARK 470 LYS E 182 CG CD CE NZ REMARK 470 GLN E 225 CG CD OE1 NE2 REMARK 470 LYS E 265 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR E 26 -60.20 71.55 REMARK 500 SER E 92 -172.67 59.67 REMARK 500 SER E 107 -163.93 61.29 REMARK 500 ASN E 111 53.64 -92.11 REMARK 500 THR E 152 -101.69 -120.45 REMARK 500 ASN E 159 -142.10 56.94 REMARK 500 THR E 194 76.92 42.23 REMARK 500 ILE E 232 -61.39 -104.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH E 769 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH E 770 DISTANCE = 6.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 57 OD1 REMARK 620 2 ASP E 57 OD2 52.8 REMARK 620 3 ASP E 59 OD2 122.1 69.7 REMARK 620 4 GLN E 61 O 95.4 89.1 88.8 REMARK 620 5 HOH E 542 O 157.2 146.1 77.2 97.1 REMARK 620 6 HOH E 582 O 82.1 133.6 155.4 84.5 80.2 REMARK 620 7 HOH E 711 O 85.2 88.7 88.1 176.7 83.4 98.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP E 138 OD2 REMARK 620 2 GLU E 177 OE1 77.6 REMARK 620 3 GLU E 177 OE2 126.5 49.4 REMARK 620 4 ASP E 185 OD1 159.8 122.5 73.3 REMARK 620 5 GLU E 187 O 84.5 147.0 144.0 78.6 REMARK 620 6 GLU E 187 O 83.5 142.8 142.6 80.4 4.4 REMARK 620 7 GLU E 190 OE1 83.4 128.4 121.0 81.8 75.6 79.9 REMARK 620 8 GLU E 190 OE2 97.2 83.6 73.0 84.4 126.4 130.7 51.6 REMARK 620 9 HOH E 553 O 99.5 78.4 79.2 87.5 77.5 73.5 152.6 152.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN E 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 142 NE2 REMARK 620 2 HIS E 146 NE2 103.5 REMARK 620 3 GLU E 166 OE1 119.7 94.5 REMARK 620 4 L4Z E 411 O 116.7 128.5 92.4 REMARK 620 5 L4Z E 411 O1 92.8 90.4 144.7 58.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 177 OE2 REMARK 620 2 ASN E 183 O 93.0 REMARK 620 3 ASP E 185 OD2 88.2 90.4 REMARK 620 4 GLU E 190 OE2 83.0 171.5 82.0 REMARK 620 5 HOH E 534 O 88.2 91.9 175.8 95.5 REMARK 620 6 HOH E 564 O 173.3 91.9 96.3 92.7 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR E 193 O REMARK 620 2 THR E 194 O 75.8 REMARK 620 3 THR E 194 OG1 75.2 71.4 REMARK 620 4 ILE E 197 O 154.8 80.6 105.4 REMARK 620 5 ASP E 200 OD2 120.9 134.5 73.3 82.2 REMARK 620 6 HOH E 577 O 83.5 150.7 123.2 114.7 74.2 REMARK 620 7 HOH E 671 O 88.6 82.2 151.6 79.6 134.9 76.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS E 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS E 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 47J E 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L4Z E 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA E 412 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6SB9 RELATED DB: PDB DBREF 6SBK E 1 316 UNP P00800 THER_BACTH 233 548 SEQRES 1 E 316 ILE THR GLY THR SER THR VAL GLY VAL GLY ARG GLY VAL SEQRES 2 E 316 LEU GLY ASP GLN LYS ASN ILE ASN THR THR TYR SER THR SEQRES 3 E 316 TYR TYR TYR LEU GLN ASP ASN THR ARG GLY ASN GLY ILE SEQRES 4 E 316 PHE THR TYR ASP ALA LYS TYR ARG THR THR LEU PRO GLY SEQRES 5 E 316 SER LEU TRP ALA ASP ALA ASP ASN GLN PHE PHE ALA SER SEQRES 6 E 316 TYR ASP ALA PRO ALA VAL ASP ALA HIS TYR TYR ALA GLY SEQRES 7 E 316 VAL THR TYR ASP TYR TYR LYS ASN VAL HIS ASN ARG LEU SEQRES 8 E 316 SER TYR ASP GLY ASN ASN ALA ALA ILE ARG SER SER VAL SEQRES 9 E 316 HIS TYR SER GLN GLY TYR ASN ASN ALA PHE TRP ASN GLY SEQRES 10 E 316 SER GLN MET VAL TYR GLY ASP GLY ASP GLY GLN THR PHE SEQRES 11 E 316 ILE PRO LEU SER GLY GLY ILE ASP VAL VAL ALA HIS GLU SEQRES 12 E 316 LEU THR HIS ALA VAL THR ASP TYR THR ALA GLY LEU ILE SEQRES 13 E 316 TYR GLN ASN GLU SER GLY ALA ILE ASN GLU ALA ILE SER SEQRES 14 E 316 ASP ILE PHE GLY THR LEU VAL GLU PHE TYR ALA ASN LYS SEQRES 15 E 316 ASN PRO ASP TRP GLU ILE GLY GLU ASP VAL TYR THR PRO SEQRES 16 E 316 GLY ILE SER GLY ASP SER LEU ARG SER MET SER ASP PRO SEQRES 17 E 316 ALA LYS TYR GLY ASP PRO ASP HIS TYR SER LYS ARG TYR SEQRES 18 E 316 THR GLY THR GLN ASP ASN GLY GLY VAL HIS ILE ASN SER SEQRES 19 E 316 GLY ILE ILE ASN LYS ALA ALA TYR LEU ILE SER GLN GLY SEQRES 20 E 316 GLY THR HIS TYR GLY VAL SER VAL VAL GLY ILE GLY ARG SEQRES 21 E 316 ASP LYS LEU GLY LYS ILE PHE TYR ARG ALA LEU THR GLN SEQRES 22 E 316 TYR LEU THR PRO THR SER ASN PHE SER GLN LEU ARG ALA SEQRES 23 E 316 ALA ALA VAL GLN SER ALA THR ASP LEU TYR GLY SER THR SEQRES 24 E 316 SER GLN GLU VAL ALA SER VAL LYS GLN ALA PHE ASP ALA SEQRES 25 E 316 VAL GLY VAL LYS HET ZN E 401 1 HET CA E 402 1 HET CA E 403 1 HET CA E 404 1 HET CA E 405 1 HET DMS E 406 4 HET DMS E 407 4 HET DMS E 408 4 HET TRS E 409 8 HET 47J E 410 9 HET L4Z E 411 12 HET IPA E 412 4 HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM 47J 1-(1,3-DIMETHYL-1H-PYRAZOL-5-YL)METHANAMINE HETNAM L4Z (2,5-DIMETHYLPYRAZOL-3-YL)METHYLCARBAMIC ACID HETNAM IPA ISOPROPYL ALCOHOL HETSYN TRS TRIS BUFFER HETSYN IPA 2-PROPANOL FORMUL 2 ZN ZN 2+ FORMUL 3 CA 4(CA 2+) FORMUL 7 DMS 3(C2 H6 O S) FORMUL 10 TRS C4 H12 N O3 1+ FORMUL 11 47J C6 H11 N3 FORMUL 12 L4Z C7 H11 N3 O2 FORMUL 13 IPA C3 H8 O FORMUL 14 HOH *270(H2 O) HELIX 1 AA1 ALA E 64 TYR E 66 5 3 HELIX 2 AA2 ASP E 67 ASN E 89 1 23 HELIX 3 AA3 PRO E 132 GLY E 135 5 4 HELIX 4 AA4 GLY E 136 THR E 152 1 17 HELIX 5 AA5 GLN E 158 ASN E 181 1 24 HELIX 6 AA6 ASP E 207 GLY E 212 5 6 HELIX 7 AA7 HIS E 216 ARG E 220 5 5 HELIX 8 AA8 THR E 224 VAL E 230 1 7 HELIX 9 AA9 ASN E 233 GLY E 247 1 15 HELIX 10 AB1 GLY E 259 TYR E 274 1 16 HELIX 11 AB2 ASN E 280 GLY E 297 1 18 HELIX 12 AB3 SER E 300 VAL E 313 1 14 SHEET 1 AA1 5 ALA E 56 ASP E 57 0 SHEET 2 AA1 5 TYR E 28 TYR E 29 -1 N TYR E 28 O ASP E 57 SHEET 3 AA1 5 GLN E 17 TYR E 24 -1 N THR E 23 O TYR E 29 SHEET 4 AA1 5 THR E 4 ARG E 11 -1 N THR E 4 O TYR E 24 SHEET 5 AA1 5 GLN E 61 PHE E 62 1 O PHE E 62 N VAL E 9 SHEET 1 AA2 3 GLN E 31 ASP E 32 0 SHEET 2 AA2 3 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA2 3 SER E 53 LEU E 54 -1 O SER E 53 N ASP E 43 SHEET 1 AA3 5 GLN E 31 ASP E 32 0 SHEET 2 AA3 5 ILE E 39 ASP E 43 -1 O ILE E 39 N ASP E 32 SHEET 3 AA3 5 ILE E 100 TYR E 106 1 O ILE E 100 N PHE E 40 SHEET 4 AA3 5 MET E 120 GLY E 123 1 O MET E 120 N ARG E 101 SHEET 5 AA3 5 ALA E 113 TRP E 115 -1 N PHE E 114 O VAL E 121 SHEET 1 AA4 2 GLU E 187 ILE E 188 0 SHEET 2 AA4 2 ARG E 203 SER E 204 -1 O ARG E 203 N ILE E 188 SHEET 1 AA5 2 GLY E 248 HIS E 250 0 SHEET 2 AA5 2 VAL E 253 VAL E 255 -1 O VAL E 255 N GLY E 248 LINK OD1 ASP E 57 CA CA E 405 1555 1555 2.36 LINK OD2 ASP E 57 CA CA E 405 1555 1555 2.54 LINK OD2 ASP E 59 CA CA E 405 1555 1555 2.38 LINK O GLN E 61 CA CA E 405 1555 1555 2.25 LINK OD2 ASP E 138 CA CA E 404 1555 1555 2.35 LINK NE2 HIS E 142 ZN ZN E 401 1555 1555 2.03 LINK NE2 HIS E 146 ZN ZN E 401 1555 1555 2.06 LINK OE1 GLU E 166 ZN ZN E 401 1555 1555 1.98 LINK OE2 GLU E 177 CA CA E 402 1555 1555 2.37 LINK OE1 GLU E 177 CA CA E 404 1555 1555 2.44 LINK OE2 GLU E 177 CA CA E 404 1555 1555 2.76 LINK O ASN E 183 CA CA E 402 1555 1555 2.28 LINK OD2 ASP E 185 CA CA E 402 1555 1555 2.34 LINK OD1 ASP E 185 CA CA E 404 1555 1555 2.47 LINK O AGLU E 187 CA CA E 404 1555 1555 2.24 LINK O BGLU E 187 CA CA E 404 1555 1555 2.36 LINK OE2 GLU E 190 CA CA E 402 1555 1555 2.35 LINK OE1 GLU E 190 CA CA E 404 1555 1555 2.56 LINK OE2 GLU E 190 CA CA E 404 1555 1555 2.50 LINK O TYR E 193 CA CA E 403 1555 1555 2.31 LINK O THR E 194 CA CA E 403 1555 1555 2.39 LINK OG1 THR E 194 CA CA E 403 1555 1555 2.38 LINK O ILE E 197 CA CA E 403 1555 1555 2.24 LINK OD2 ASP E 200 CA CA E 403 1555 1555 2.39 LINK ZN ZN E 401 O L4Z E 411 1555 1555 2.05 LINK ZN ZN E 401 O1 L4Z E 411 1555 1555 2.47 LINK CA CA E 402 O HOH E 534 1555 1555 2.33 LINK CA CA E 402 O HOH E 564 1555 1555 2.34 LINK CA CA E 403 O HOH E 577 1555 1555 2.39 LINK CA CA E 403 O HOH E 671 1555 1555 2.39 LINK CA CA E 404 O HOH E 553 1555 1555 2.43 LINK CA CA E 405 O HOH E 542 1555 1555 2.37 LINK CA CA E 405 O HOH E 582 1555 1555 2.43 LINK CA CA E 405 O HOH E 711 1555 1555 2.37 CISPEP 1 LEU E 50 PRO E 51 0 4.78 SITE 1 AC1 4 HIS E 142 HIS E 146 GLU E 166 L4Z E 411 SITE 1 AC2 6 GLU E 177 ASN E 183 ASP E 185 GLU E 190 SITE 2 AC2 6 HOH E 534 HOH E 564 SITE 1 AC3 6 TYR E 193 THR E 194 ILE E 197 ASP E 200 SITE 2 AC3 6 HOH E 577 HOH E 671 SITE 1 AC4 6 ASP E 138 GLU E 177 ASP E 185 GLU E 187 SITE 2 AC4 6 GLU E 190 HOH E 553 SITE 1 AC5 6 ASP E 57 ASP E 59 GLN E 61 HOH E 542 SITE 2 AC5 6 HOH E 582 HOH E 711 SITE 1 AC6 6 ASN E 112 HIS E 142 GLU E 143 ARG E 203 SITE 2 AC6 6 L4Z E 411 HOH E 527 SITE 1 AC7 4 GLY E 259 ARG E 260 ASP E 261 HOH E 511 SITE 1 AC8 5 GLY E 95 PRO E 184 ASP E 185 TRP E 186 SITE 2 AC8 5 HOH E 507 SITE 1 AC9 4 LEU E 202 ARG E 203 ASP E 213 HIS E 231 SITE 1 AD1 7 ASN E 159 TYR E 221 THR E 222 GLY E 223 SITE 2 AD1 7 GLY E 228 ASN E 233 HOH E 540 SITE 1 AD2 12 TYR E 110 ASN E 112 ALA E 113 HIS E 142 SITE 2 AD2 12 GLU E 143 HIS E 146 TYR E 157 GLU E 166 SITE 3 AD2 12 HIS E 231 ZN E 401 DMS E 406 HOH E 667 SITE 1 AD3 3 TYR E 24 SER E 25 TYR E 28 CRYST1 92.561 92.561 129.273 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010804 0.006238 0.000000 0.00000 SCALE2 0.000000 0.012475 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007736 0.00000