HEADER HYDROLASE 22-JUL-19 6SBN TITLE POLYESTER HYDROLASE PE-H OF PSEUDOMONAS AESTUSNIGRI COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYESTER HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AESTUSNIGRI; SOURCE 3 ORGANISM_TAXID: 857252; SOURCE 4 GENE: B7O88_11480; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS POLYESTER DEGRADATION, PET HYDROLASE, MARINE BACTERIA, PSEUDOMONAS KEYWDS 2 AESTUSNIGRI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BOLLINGER,S.THIES,S.KOBUS,A.HOEPPNER,S.H.J.SMITS,K.-E.JAEGER REVDAT 2 11-MAR-20 6SBN 1 JRNL REVDAT 1 26-FEB-20 6SBN 0 JRNL AUTH A.BOLLINGER,S.THIES,E.KNIEPS-GRUNHAGEN,C.GERTZEN,S.KOBUS, JRNL AUTH 2 A.HOPPNER,M.FERRER,H.GOHLKE,S.H.J.SMITS,K.E.JAEGER JRNL TITL A NOVEL POLYESTER HYDROLASE FROM THE MARINE JRNL TITL 2 BACTERIUMPSEUDOMONAS AESTUSNIGRI -STRUCTURAL AND FUNCTIONAL JRNL TITL 3 INSIGHTS. JRNL REF FRONT MICROBIOL V. 11 114 2020 JRNL REFN ESSN 1664-302X JRNL PMID 32117139 JRNL DOI 10.3389/FMICB.2020.00114 REMARK 2 REMARK 2 RESOLUTION. 1.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 99673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.108 REMARK 3 R VALUE (WORKING SET) : 0.107 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2100 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.09 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7185 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.1540 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.1850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1983 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 368 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.023 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.628 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.985 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2104 ; 0.027 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1894 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2877 ; 2.206 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4376 ; 1.545 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 6.782 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;29.963 ;22.967 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;11.204 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.522 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 308 ; 0.193 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2464 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 510 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3997 ; 6.272 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 85 ;27.420 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4218 ;12.675 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SBN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976247 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43000 REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.5, 16 % REMARK 280 (W/V) PEG 3000, 0.036 MM LYSO-FOSCHOLINE14, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.45600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.45600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.40700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.00700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.40700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.00700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.45600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.40700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.00700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.45600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.40700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.00700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 PHE A 3 REMARK 465 ASN A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 SER A 7 REMARK 465 VAL A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 CYS A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 LEU A 18 REMARK 465 PHE A 19 REMARK 465 SER A 20 REMARK 465 MET A 21 REMARK 465 SER A 22 REMARK 465 ALA A 23 REMARK 465 LEU A 24 REMARK 465 ALA A 25 REMARK 465 ASN A 26 REMARK 465 ASN A 27 REMARK 465 PRO A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 THR A 31 REMARK 465 ASP A 32 REMARK 465 PRO A 33 REMARK 465 GLY A 34 REMARK 465 ASP A 35 REMARK 465 SER A 36 REMARK 465 GLY A 37 REMARK 465 GLY A 286 REMARK 465 PRO A 287 REMARK 465 ASN A 288 REMARK 465 HIS A 289 REMARK 465 THR A 290 REMARK 465 SER A 291 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 HIS A 311 REMARK 465 HIS A 312 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLY A 38 N CA REMARK 470 ARG A 63 CZ NH1 NH2 REMARK 470 ASP A 292 CG OD1 OD2 REMARK 470 LEU A 305 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 769 O HOH A 850 1.73 REMARK 500 O HOH A 789 O HOH A 794 1.89 REMARK 500 O HOH A 579 O HOH A 730 2.07 REMARK 500 O HOH A 604 O HOH A 830 2.15 REMARK 500 O HOH A 564 O HOH A 696 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 75 CA GLY A 75 C 0.111 REMARK 500 GLY A 76 N GLY A 76 CA 0.119 REMARK 500 ARG A 151 CD ARG A 151 NE -0.170 REMARK 500 ARG A 151 CZ ARG A 151 NH2 -0.151 REMARK 500 GLU A 183 CD GLU A 183 OE1 0.073 REMARK 500 CYS A 285 C CYS A 285 O 0.133 REMARK 500 GLN A 294 CG GLN A 294 CD 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU A 70 CB - CG - CD2 ANGL. DEV. = -17.1 DEGREES REMARK 500 GLY A 76 C - N - CA ANGL. DEV. = -18.9 DEGREES REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = -12.4 DEGREES REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = 9.6 DEGREES REMARK 500 MET A 172 CA - CB - CG ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 264 NE - CZ - NH1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 264 NE - CZ - NH2 ANGL. DEV. = 5.8 DEGREES REMARK 500 CYS A 285 CA - C - O ANGL. DEV. = -17.4 DEGREES REMARK 500 ASP A 292 O - C - N ANGL. DEV. = -16.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 96 -157.85 -87.47 REMARK 500 SER A 104 -159.34 -137.19 REMARK 500 ASP A 129 -87.48 -148.28 REMARK 500 SER A 171 -125.20 69.90 REMARK 500 HIS A 225 -89.46 -131.84 REMARK 500 SER A 256 -136.45 -125.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 865 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A 866 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 867 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A 868 DISTANCE = 7.00 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 216 OG REMARK 620 2 HOH A 783 O 98.0 REMARK 620 3 SER A 152 OG 48.6 118.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 DBREF1 6SBN A 1 304 UNP A0A1H6AD45_9PSED DBREF2 6SBN A A0A1H6AD45 1 304 SEQADV 6SBN LEU A 305 UNP A0A1H6AD4 EXPRESSION TAG SEQADV 6SBN GLU A 306 UNP A0A1H6AD4 EXPRESSION TAG SEQADV 6SBN HIS A 307 UNP A0A1H6AD4 EXPRESSION TAG SEQADV 6SBN HIS A 308 UNP A0A1H6AD4 EXPRESSION TAG SEQADV 6SBN HIS A 309 UNP A0A1H6AD4 EXPRESSION TAG SEQADV 6SBN HIS A 310 UNP A0A1H6AD4 EXPRESSION TAG SEQADV 6SBN HIS A 311 UNP A0A1H6AD4 EXPRESSION TAG SEQADV 6SBN HIS A 312 UNP A0A1H6AD4 EXPRESSION TAG SEQRES 1 A 312 MET PRO PHE ASN LYS LYS SER VAL LEU ALA LEU CYS GLY SEQRES 2 A 312 ALA GLY ALA LEU LEU PHE SER MET SER ALA LEU ALA ASN SEQRES 3 A 312 ASN PRO ALA PRO THR ASP PRO GLY ASP SER GLY GLY GLY SEQRES 4 A 312 SER ALA TYR GLN ARG GLY PRO ASP PRO SER VAL SER PHE SEQRES 5 A 312 LEU GLU ALA ASP ARG GLY GLN TYR SER VAL ARG SER SER SEQRES 6 A 312 ARG VAL SER SER LEU VAL SER GLY PHE GLY GLY GLY THR SEQRES 7 A 312 ILE TYR TYR PRO THR GLY THR THR GLY THR MET GLY ALA SEQRES 8 A 312 VAL VAL VAL ILE PRO GLY PHE VAL SER ALA GLU SER SER SEQRES 9 A 312 ILE ASP TRP TRP GLY PRO LYS LEU ALA SER TYR GLY PHE SEQRES 10 A 312 VAL VAL MET THR ILE ASP THR ASN THR GLY PHE ASP GLN SEQRES 11 A 312 PRO PRO SER ARG ALA ARG GLN ILE ASN ASN ALA LEU ASP SEQRES 12 A 312 TYR LEU VAL SER GLN ASN SER ARG SER SER SER PRO VAL SEQRES 13 A 312 ARG GLY MET ILE ASP THR ASN ARG LEU GLY VAL ILE GLY SEQRES 14 A 312 TRP SER MET GLY GLY GLY GLY THR LEU ARG VAL ALA SER SEQRES 15 A 312 GLU GLY ARG ILE LYS ALA ALA ILE PRO LEU ALA PRO TRP SEQRES 16 A 312 ASP THR THR SER TYR TYR ALA SER ARG SER GLN ALA PRO SEQRES 17 A 312 THR LEU ILE PHE ALA CYS GLU SER ASP VAL ILE ALA PRO SEQRES 18 A 312 VAL LEU GLN HIS ALA SER PRO PHE TYR ASN SER LEU PRO SEQRES 19 A 312 SER SER ILE ASP LYS ALA PHE VAL GLU ILE ASN GLY GLY SEQRES 20 A 312 SER HIS TYR CYS GLY ASN GLY GLY SER ILE TYR ASN ASP SEQRES 21 A 312 VAL LEU SER ARG PHE GLY VAL SER TRP MET LYS LEU HIS SEQRES 22 A 312 LEU ASP GLU ASP SER ARG TYR LYS GLN PHE LEU CYS GLY SEQRES 23 A 312 PRO ASN HIS THR SER ASP SER GLN ILE SER ASP TYR ARG SEQRES 24 A 312 GLY ASN CYS PRO TYR LEU GLU HIS HIS HIS HIS HIS HIS HET ACT A 401 4 HET NA A 402 1 HETNAM ACT ACETATE ION HETNAM NA SODIUM ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 NA NA 1+ FORMUL 4 HOH *368(H2 O) HELIX 1 AA1 SER A 49 ALA A 55 1 7 HELIX 2 AA2 SER A 68 GLY A 73 1 6 HELIX 3 AA3 TRP A 107 PHE A 117 1 11 HELIX 4 AA4 GLN A 130 ASN A 149 1 20 HELIX 5 AA5 SER A 171 SER A 182 1 12 HELIX 6 AA6 TYR A 201 SER A 205 5 5 HELIX 7 AA7 HIS A 225 LEU A 233 1 9 HELIX 8 AA8 TYR A 258 GLU A 276 1 19 HELIX 9 AA9 ASP A 277 LEU A 284 5 8 SHEET 1 AA1 6 VAL A 62 VAL A 67 0 SHEET 2 AA1 6 GLY A 77 PRO A 82 -1 O ILE A 79 N SER A 65 SHEET 3 AA1 6 VAL A 118 ILE A 122 -1 O VAL A 119 N TYR A 80 SHEET 4 AA1 6 MET A 89 ILE A 95 1 N VAL A 92 O MET A 120 SHEET 5 AA1 6 ILE A 160 TRP A 170 1 O ASP A 161 N MET A 89 SHEET 6 AA1 6 ALA A 188 LEU A 192 1 O LEU A 192 N GLY A 169 SHEET 1 AA2 3 THR A 209 CYS A 214 0 SHEET 2 AA2 3 LYS A 239 ILE A 244 1 O ILE A 244 N ALA A 213 SHEET 3 AA2 3 ILE A 295 GLY A 300 -1 O ASP A 297 N GLU A 243 SSBOND 1 CYS A 214 CYS A 251 1555 1555 2.04 SSBOND 2 CYS A 285 CYS A 302 1555 1555 2.04 LINK OG SER A 216 NA NA A 402 1555 1555 2.95 LINK NA NA A 402 O HOH A 783 1555 1555 2.85 LINK OG SER A 152 NA NA A 402 1555 6554 3.20 CISPEP 1 CYS A 302 PRO A 303 0 -1.82 SITE 1 AC1 7 GLY A 127 PHE A 128 SER A 133 ARG A 136 SITE 2 AC1 7 HOH A 519 HOH A 611 HOH A 650 SITE 1 AC2 6 SER A 150 ARG A 151 SER A 152 GLU A 215 SITE 2 AC2 6 SER A 216 HOH A 783 CRYST1 68.814 80.014 88.912 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014532 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011247 0.00000