HEADER HYDROLASE 22-JUL-19 6SBR TITLE THE CRYSTAL STRUCTURE OF PFA-M1 IN COMPLEX WITH 7-AMINO-1,4-DIBROMO-5, TITLE 2 7,8,9-TETRAHYDROBENZOCYCLOHEPTEN-6-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: M1-FAMILY ALANYL AMINOPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.11.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM (ISOLATE 3D7); SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PF3D7_1311800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET45B(+) KEYWDS M1 AMINOPEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.SALOMON,M.SCHMITT,E.MOURAY,A.G.MCEWEN,M.TORCHY,P.POUSSIN- AUTHOR 2 COURMONTAGNE,S.ALAVI,C.TARNUS,J.CAVARELLI,I.FLORENT,S.ALBRECHT REVDAT 2 24-JAN-24 6SBR 1 REMARK REVDAT 1 25-MAR-20 6SBR 0 JRNL AUTH E.SALOMON,M.SCHMITT,E.MOURAY,A.G.MCEWEN,L.BOUNAADJA, JRNL AUTH 2 M.TORCHY,P.POUSSIN-COURMONTAGNE,S.ALAVI,C.TARNUS, JRNL AUTH 3 J.CAVARELLI,I.FLORENT,S.ALBRECHT JRNL TITL AMINOBENZOSUBERONE DERIVATIVES AS PFA-M1 INHIBITORS: JRNL TITL 2 MOLECULAR RECOGNITION AND ANTIPLASMODIAL EVALUATION. JRNL REF BIOORG.CHEM. V. 98 03750 2020 JRNL REFN ISSN 0045-2068 JRNL PMID 32182520 JRNL DOI 10.1016/J.BIOORG.2020.103750 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 139813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.8150 - 4.7845 0.99 4757 250 0.1616 0.1666 REMARK 3 2 4.7845 - 3.7977 0.99 4625 241 0.1102 0.1351 REMARK 3 3 3.7977 - 3.3177 0.99 4572 241 0.1201 0.1501 REMARK 3 4 3.3177 - 3.0144 1.00 4560 241 0.1274 0.1659 REMARK 3 5 3.0144 - 2.7983 0.99 4501 237 0.1294 0.1767 REMARK 3 6 2.7983 - 2.6333 0.99 4479 236 0.1289 0.1692 REMARK 3 7 2.6333 - 2.5014 0.99 4510 237 0.1269 0.1646 REMARK 3 8 2.5014 - 2.3925 0.99 4472 237 0.1254 0.1812 REMARK 3 9 2.3925 - 2.3004 0.99 4483 235 0.1154 0.1720 REMARK 3 10 2.3004 - 2.2210 0.99 4454 234 0.1111 0.1511 REMARK 3 11 2.2210 - 2.1516 0.99 4432 233 0.1109 0.1500 REMARK 3 12 2.1516 - 2.0901 0.99 4456 236 0.1126 0.1632 REMARK 3 13 2.0901 - 2.0351 0.99 4427 231 0.1212 0.1614 REMARK 3 14 2.0351 - 1.9854 0.98 4430 232 0.1255 0.1855 REMARK 3 15 1.9854 - 1.9403 0.98 4423 234 0.1318 0.1659 REMARK 3 16 1.9403 - 1.8990 0.95 4243 225 0.1319 0.1960 REMARK 3 17 1.8990 - 1.8610 0.98 4364 230 0.1851 0.2368 REMARK 3 18 1.8610 - 1.8259 0.98 4413 231 0.1950 0.2415 REMARK 3 19 1.8259 - 1.7933 0.98 4387 231 0.1943 0.2399 REMARK 3 20 1.7933 - 1.7629 0.97 4367 230 0.1922 0.2570 REMARK 3 21 1.7629 - 1.7344 0.98 4394 231 0.1994 0.2484 REMARK 3 22 1.7344 - 1.7077 0.98 4372 230 0.2027 0.2751 REMARK 3 23 1.7077 - 1.6826 0.98 4357 229 0.2166 0.2669 REMARK 3 24 1.6826 - 1.6589 0.98 4353 230 0.2295 0.2883 REMARK 3 25 1.6589 - 1.6365 0.97 4356 230 0.2562 0.3055 REMARK 3 26 1.6365 - 1.6152 0.97 4360 230 0.2959 0.3280 REMARK 3 27 1.6152 - 1.5950 0.97 4337 228 0.3168 0.3341 REMARK 3 28 1.5950 - 1.5758 0.98 4345 229 0.3576 0.3708 REMARK 3 29 1.5758 - 1.5575 0.97 4325 226 0.3904 0.4246 REMARK 3 30 1.5575 - 1.5400 0.96 4267 227 0.4199 0.4325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 172697 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 63.815 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 5.380 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.34 REMARK 200 R MERGE FOR SHELL (I) : 11.97700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6SBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1M BIS-TRIS PROPANE PH REMARK 280 6.5, 0.2M SODIUM MALONATE DIBASIC, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.58050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.75950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.83100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.75950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.58050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.83100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 162 REMARK 465 ALA A 163 REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 VAL A 170 REMARK 465 GLY A 171 REMARK 465 THR A 172 REMARK 465 GLY A 173 REMARK 465 SER A 174 REMARK 465 ASN A 175 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 465 ASP A 178 REMARK 465 ASP A 179 REMARK 465 LYS A 180 REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 ASP A 183 REMARK 465 PRO A 184 REMARK 465 GLU A 185 REMARK 465 ASN A 186 REMARK 465 LEU A 187 REMARK 465 TYR A 188 REMARK 465 PHE A 189 REMARK 465 GLN A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 LYS A 193 REMARK 465 ASN A 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ZN ZN A 1101 H13 L5E A 1102 1.56 REMARK 500 HG1 THR A 398 OE2 GLU A 409 1.59 REMARK 500 O HOH A 1605 O HOH A 2209 2.17 REMARK 500 O HOH A 1793 O HOH A 1971 2.17 REMARK 500 O HOH A 2180 O HOH A 2294 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN A 723 OE2 GLU A 792 4467 1.47 REMARK 500 O HOH A 2002 O HOH A 2142 2775 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 274 -41.97 -136.43 REMARK 500 LYS A 311 -115.99 54.71 REMARK 500 LYS A 311 -114.53 52.45 REMARK 500 ALA A 461 -179.59 -175.25 REMARK 500 GLU A 463 33.08 -89.89 REMARK 500 LEU A 467 69.54 -151.65 REMARK 500 LEU A 475 -34.20 -131.92 REMARK 500 ASN A 505 -65.37 -99.48 REMARK 500 THR A 508 -162.42 -113.57 REMARK 500 SER A 549 -75.36 -95.91 REMARK 500 PHE A 736 73.71 54.41 REMARK 500 ASP A 974 31.46 -95.72 REMARK 500 VAL A 986 -54.40 -128.11 REMARK 500 LYS A 988 -127.85 49.28 REMARK 500 LYS A 988 -129.26 49.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2465 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A2466 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 496 NE2 REMARK 620 2 HIS A 500 NE2 99.8 REMARK 620 3 GLU A 519 OE1 106.9 106.9 REMARK 620 4 L5E A1102 O2 111.0 130.3 100.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue L5E A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B3P A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1105 DBREF 6SBR A 192 1085 UNP Q8IEK1 Q8IEK1_PLAF7 192 1085 SEQADV 6SBR MET A 162 UNP Q8IEK1 INITIATING METHIONINE SEQADV 6SBR ALA A 163 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR HIS A 164 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR HIS A 165 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR HIS A 166 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR HIS A 167 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR HIS A 168 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR HIS A 169 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR VAL A 170 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR GLY A 171 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR THR A 172 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR GLY A 173 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR SER A 174 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR ASN A 175 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR ASP A 176 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR ASP A 177 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR ASP A 178 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR ASP A 179 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR LYS A 180 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR SER A 181 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR PRO A 182 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR ASP A 183 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR PRO A 184 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR GLU A 185 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR ASN A 186 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR LEU A 187 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR TYR A 188 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR PHE A 189 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR GLN A 190 UNP Q8IEK1 EXPRESSION TAG SEQADV 6SBR SER A 191 UNP Q8IEK1 EXPRESSION TAG SEQRES 1 A 924 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR GLY SER SEQRES 2 A 924 ASN ASP ASP ASP ASP LYS SER PRO ASP PRO GLU ASN LEU SEQRES 3 A 924 TYR PHE GLN SER LYS LYS ASN GLU PRO LYS ILE HIS TYR SEQRES 4 A 924 ARG LYS ASP TYR LYS PRO SER GLY PHE ILE ILE ASN ASN SEQRES 5 A 924 VAL THR LEU ASN ILE ASN ILE HIS ASP ASN GLU THR ILE SEQRES 6 A 924 VAL ARG SER VAL LEU ASP MET ASP ILE SER LYS HIS ASN SEQRES 7 A 924 VAL GLY GLU ASP LEU VAL PHE ASP GLY VAL GLY LEU LYS SEQRES 8 A 924 ILE ASN GLU ILE SER ILE ASN ASN LYS LYS LEU VAL GLU SEQRES 9 A 924 GLY GLU GLU TYR THR TYR ASP ASN GLU PHE LEU THR ILE SEQRES 10 A 924 PHE SER LYS PHE VAL PRO LYS SER LYS PHE ALA PHE SER SEQRES 11 A 924 SER GLU VAL ILE ILE HIS PRO GLU THR ASN TYR ALA LEU SEQRES 12 A 924 THR GLY LEU TYR LYS SER LYS ASN ILE ILE VAL SER GLN SEQRES 13 A 924 CYS GLU ALA THR GLY PHE ARG ARG ILE THR PHE PHE ILE SEQRES 14 A 924 ASP ARG PRO ASP MET MET ALA LYS TYR ASP VAL THR VAL SEQRES 15 A 924 THR ALA ASP LYS GLU LYS TYR PRO VAL LEU LEU SER ASN SEQRES 16 A 924 GLY ASP LYS VAL ASN GLU PHE GLU ILE PRO GLY GLY ARG SEQRES 17 A 924 HIS GLY ALA ARG PHE ASN ASP PRO HIS LEU LYS PRO CYS SEQRES 18 A 924 TYR LEU PHE ALA VAL VAL ALA GLY ASP LEU LYS HIS LEU SEQRES 19 A 924 SER ALA THR TYR ILE THR LYS TYR THR LYS LYS LYS VAL SEQRES 20 A 924 GLU LEU TYR VAL PHE SER GLU GLU LYS TYR VAL SER LYS SEQRES 21 A 924 LEU GLN TRP ALA LEU GLU CYS LEU LYS LYS SER MET ALA SEQRES 22 A 924 PHE ASP GLU ASP TYR PHE GLY LEU GLU TYR ASP LEU SER SEQRES 23 A 924 ARG LEU ASN LEU VAL ALA VAL SER ASP PHE ASN VAL GLY SEQRES 24 A 924 ALA MET GLU ASN LYS GLY LEU ASN ILE PHE ASN ALA ASN SEQRES 25 A 924 SER LEU LEU ALA SER LYS LYS ASN SER ILE ASP PHE SER SEQRES 26 A 924 TYR ALA ARG ILE LEU THR VAL VAL GLY HIS GLU TYR PHE SEQRES 27 A 924 HIS ASN TYR THR GLY ASN ARG VAL THR LEU ARG ASP TRP SEQRES 28 A 924 PHE GLN LEU THR LEU LYS GLU GLY LEU THR VAL HIS ARG SEQRES 29 A 924 GLU ASN LEU PHE SER GLU GLU MET THR LYS THR VAL THR SEQRES 30 A 924 THR ARG LEU SER HIS VAL ASP LEU LEU ARG SER VAL GLN SEQRES 31 A 924 PHE LEU GLU ASP SER SER PRO LEU SER HIS PRO ILE ARG SEQRES 32 A 924 PRO GLU SER TYR VAL SER MET GLU ASN PHE TYR THR THR SEQRES 33 A 924 THR VAL TYR ASP LYS GLY SER GLU VAL MET ARG MET TYR SEQRES 34 A 924 LEU THR ILE LEU GLY GLU GLU TYR TYR LYS LYS GLY PHE SEQRES 35 A 924 ASP ILE TYR ILE LYS LYS ASN ASP GLY ASN THR ALA THR SEQRES 36 A 924 CYS GLU ASP PHE ASN TYR ALA MET GLU GLN ALA TYR LYS SEQRES 37 A 924 MET LYS LYS ALA ASP ASN SER ALA ASN LEU ASN GLN TYR SEQRES 38 A 924 LEU LEU TRP PHE SER GLN SER GLY THR PRO HIS VAL SER SEQRES 39 A 924 PHE LYS TYR ASN TYR ASP ALA GLU LYS LYS GLN TYR SER SEQRES 40 A 924 ILE HIS VAL ASN GLN TYR THR LYS PRO ASP GLU ASN GLN SEQRES 41 A 924 LYS GLU LYS LYS PRO LEU PHE ILE PRO ILE SER VAL GLY SEQRES 42 A 924 LEU ILE ASN PRO GLU ASN GLY LYS GLU MET ILE SER GLN SEQRES 43 A 924 THR THR LEU GLU LEU THR LYS GLU SER ASP THR PHE VAL SEQRES 44 A 924 PHE ASN ASN ILE ALA VAL LYS PRO ILE PRO SER LEU PHE SEQRES 45 A 924 ARG GLY PHE SER ALA PRO VAL TYR ILE GLU ASP ASN LEU SEQRES 46 A 924 THR ASP GLU GLU ARG ILE LEU LEU LEU LYS TYR ASP SER SEQRES 47 A 924 ASP ALA PHE VAL ARG TYR ASN SER CYS THR ASN ILE TYR SEQRES 48 A 924 MET LYS GLN ILE LEU MET ASN TYR ASN GLU PHE LEU LYS SEQRES 49 A 924 ALA LYS ASN GLU LYS LEU GLU SER PHE ASN LEU THR PRO SEQRES 50 A 924 VAL ASN ALA GLN PHE ILE ASP ALA ILE LYS TYR LEU LEU SEQRES 51 A 924 GLU ASP PRO HIS ALA ASP ALA GLY PHE LYS SER TYR ILE SEQRES 52 A 924 VAL SER LEU PRO GLN ASP ARG TYR ILE ILE ASN PHE VAL SEQRES 53 A 924 SER ASN LEU ASP THR ASP VAL LEU ALA ASP THR LYS GLU SEQRES 54 A 924 TYR ILE TYR LYS GLN ILE GLY ASP LYS LEU ASN ASP VAL SEQRES 55 A 924 TYR TYR LYS MET PHE LYS SER LEU GLU ALA LYS ALA ASP SEQRES 56 A 924 ASP LEU THR TYR PHE ASN ASP GLU SER HIS VAL ASP PHE SEQRES 57 A 924 ASP GLN MET ASN MET ARG THR LEU ARG ASN THR LEU LEU SEQRES 58 A 924 SER LEU LEU SER LYS ALA GLN TYR PRO ASN ILE LEU ASN SEQRES 59 A 924 GLU ILE ILE GLU HIS SER LYS SER PRO TYR PRO SER ASN SEQRES 60 A 924 TRP LEU THR SER LEU SER VAL SER ALA TYR PHE ASP LYS SEQRES 61 A 924 TYR PHE GLU LEU TYR ASP LYS THR TYR LYS LEU SER LYS SEQRES 62 A 924 ASP ASP GLU LEU LEU LEU GLN GLU TRP LEU LYS THR VAL SEQRES 63 A 924 SER ARG SER ASP ARG LYS ASP ILE TYR GLU ILE LEU LYS SEQRES 64 A 924 LYS LEU GLU ASN GLU VAL LEU LYS ASP SER LYS ASN PRO SEQRES 65 A 924 ASN ASP ILE ARG ALA VAL TYR LEU PRO PHE THR ASN ASN SEQRES 66 A 924 LEU ARG ARG PHE HIS ASP ILE SER GLY LYS GLY TYR LYS SEQRES 67 A 924 LEU ILE ALA GLU VAL ILE THR LYS THR ASP LYS PHE ASN SEQRES 68 A 924 PRO MET VAL ALA THR GLN LEU CYS GLU PRO PHE LYS LEU SEQRES 69 A 924 TRP ASN LYS LEU ASP THR LYS ARG GLN GLU LEU MET LEU SEQRES 70 A 924 ASN GLU MET ASN THR MET LEU GLN GLU PRO ASN ILE SER SEQRES 71 A 924 ASN ASN LEU LYS GLU TYR LEU LEU ARG LEU THR ASN LYS SEQRES 72 A 924 LEU HET ZN A1101 1 HET L5E A1102 30 HET B3P A1103 45 HET GOL A1104 14 HET CL A1105 1 HETNAM ZN ZINC ION HETNAM L5E [(7~{S})-1,4-BIS(BROMANYL)-6,6-BIS(OXIDANYL)-5,7,8,9- HETNAM 2 L5E TETRAHYDROBENZO[7]ANNULEN-7-YL]AZANIUM HETNAM B3P 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)- HETNAM 2 B3P PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 L5E C11 H14 BR2 N O2 1+ FORMUL 4 B3P C11 H26 N2 O6 FORMUL 5 GOL C3 H8 O3 FORMUL 6 CL CL 1- FORMUL 7 HOH *1266(H2 O) HELIX 1 AA1 LYS A 202 TYR A 204 5 3 HELIX 2 AA2 SER A 280 VAL A 283 5 4 HELIX 3 AA3 HIS A 297 ASN A 301 5 5 HELIX 4 AA4 GLY A 322 ILE A 326 5 5 HELIX 5 AA5 PRO A 381 PHE A 385 5 5 HELIX 6 AA6 LYS A 417 LYS A 421 5 5 HELIX 7 AA7 LEU A 422 GLY A 441 1 20 HELIX 8 AA8 ASN A 473 LEU A 475 5 3 HELIX 9 AA9 ASP A 484 HIS A 500 1 17 HELIX 10 AB1 ASP A 511 PHE A 513 5 3 HELIX 11 AB2 GLN A 514 LYS A 535 1 22 HELIX 12 AB3 VAL A 537 SER A 557 1 21 HELIX 13 AB4 SER A 570 TYR A 575 5 6 HELIX 14 AB5 THR A 576 ASP A 611 1 36 HELIX 15 AB6 THR A 616 ALA A 633 1 18 HELIX 16 AB7 ASN A 640 TYR A 642 5 3 HELIX 17 AB8 LEU A 643 GLN A 648 1 6 HELIX 18 AB9 THR A 747 ASP A 758 1 12 HELIX 19 AC1 ASP A 760 GLU A 789 1 30 HELIX 20 AC2 ASN A 800 ASP A 813 1 14 HELIX 21 AC3 ASP A 817 VAL A 825 1 9 HELIX 22 AC4 GLN A 829 ILE A 834 1 6 HELIX 23 AC5 ASN A 835 VAL A 837 5 3 HELIX 24 AC6 ASP A 841 LEU A 871 1 31 HELIX 25 AC7 LEU A 871 ASP A 876 1 6 HELIX 26 AC8 ASP A 888 ALA A 908 1 21 HELIX 27 AC9 ASN A 912 SER A 921 1 10 HELIX 28 AD1 TYR A 925 SER A 936 1 12 HELIX 29 AD2 ALA A 937 PHE A 939 5 3 HELIX 30 AD3 LYS A 941 LYS A 954 1 14 HELIX 31 AD4 ASP A 956 ARG A 969 1 14 HELIX 32 AD5 ASP A 974 VAL A 986 1 13 HELIX 33 AD6 ASN A 992 ASN A 1005 1 14 HELIX 34 AD7 ASN A 1006 HIS A 1011 1 6 HELIX 35 AD8 GLY A 1015 LYS A 1030 1 16 HELIX 36 AD9 ASN A 1032 LEU A 1039 1 8 HELIX 37 AE1 CYS A 1040 LEU A 1049 5 10 HELIX 38 AE2 ASP A 1050 GLN A 1066 1 17 HELIX 39 AE3 SER A 1071 THR A 1082 1 12 SHEET 1 AA1 2 HIS A 199 TYR A 200 0 SHEET 2 AA1 2 SER A 567 TYR A 568 -1 O TYR A 568 N HIS A 199 SHEET 1 AA2 8 LYS A 261 LYS A 262 0 SHEET 2 AA2 8 LYS A 252 ILE A 258 -1 N ILE A 258 O LYS A 261 SHEET 3 AA2 8 PHE A 288 ILE A 296 -1 O GLU A 293 N ASN A 254 SHEET 4 AA2 8 THR A 225 ILE A 235 -1 N LEU A 231 O PHE A 290 SHEET 5 AA2 8 PHE A 209 ILE A 220 -1 N ASN A 219 O ILE A 226 SHEET 6 AA2 8 ALA A 337 ASP A 346 1 O ASP A 340 N VAL A 214 SHEET 7 AA2 8 ARG A 369 LYS A 380 -1 O PHE A 374 N VAL A 341 SHEET 8 AA2 8 ASP A 358 ILE A 365 -1 N PHE A 363 O GLY A 371 SHEET 1 AA3 3 LEU A 244 ASP A 247 0 SHEET 2 AA3 3 PHE A 275 ILE A 278 -1 O ILE A 278 N LEU A 244 SHEET 3 AA3 3 TYR A 269 TYR A 271 -1 N THR A 270 O THR A 277 SHEET 1 AA4 4 GLY A 306 SER A 310 0 SHEET 2 AA4 4 ILE A 313 GLN A 317 -1 O ILE A 313 N SER A 310 SHEET 3 AA4 4 VAL A 387 GLY A 390 -1 O ALA A 389 N ILE A 314 SHEET 4 AA4 4 VAL A 352 SER A 355 -1 N LEU A 354 O VAL A 388 SHEET 1 AA5 5 LEU A 392 ILE A 400 0 SHEET 2 AA5 5 LYS A 407 GLU A 415 -1 O VAL A 408 N TYR A 399 SHEET 3 AA5 5 ARG A 448 VAL A 454 1 O LEU A 451 N PHE A 413 SHEET 4 AA5 5 LEU A 467 ASN A 471 1 O PHE A 470 N VAL A 452 SHEET 5 AA5 5 ALA A 461 MET A 462 -1 N MET A 462 O ILE A 469 SHEET 1 AA6 2 THR A 508 LEU A 509 0 SHEET 2 AA6 2 THR A 614 ALA A 615 1 O ALA A 615 N THR A 508 SHEET 1 AA7 4 SER A 716 PHE A 721 0 SHEET 2 AA7 4 GLN A 666 TYR A 674 -1 N VAL A 671 O ASP A 717 SHEET 3 AA7 4 HIS A 653 ASP A 661 -1 N LYS A 657 O HIS A 670 SHEET 4 AA7 4 TYR A 741 GLU A 743 1 O TYR A 741 N VAL A 654 SHEET 1 AA8 3 THR A 708 LEU A 712 0 SHEET 2 AA8 3 ILE A 689 ILE A 696 -1 N ILE A 691 O LEU A 710 SHEET 3 AA8 3 ILE A 729 LEU A 732 -1 O SER A 731 N GLY A 694 LINK NE2 HIS A 496 ZN ZN A1101 1555 1555 2.05 LINK NE2 HIS A 500 ZN ZN A1101 1555 1555 2.07 LINK OE1 GLU A 519 ZN ZN A1101 1555 1555 1.98 LINK ZN ZN A1101 O2 L5E A1102 1555 1555 1.95 CISPEP 1 GLU A 319 ALA A 320 0 3.01 CISPEP 2 GLU A 319 ALA A 320 0 1.02 SITE 1 AC1 4 HIS A 496 HIS A 500 GLU A 519 L5E A1102 SITE 1 AC2 13 GLU A 319 VAL A 459 ALA A 461 GLU A 463 SITE 2 AC2 13 HIS A 496 GLU A 497 HIS A 500 LYS A 518 SITE 3 AC2 13 GLU A 519 TYR A 575 TYR A 580 ZN A1101 SITE 4 AC2 13 GOL A1104 SITE 1 AC3 10 ASN A 613 THR A 614 ALA A 615 ASP A 619 SITE 2 AC3 10 HOH A1437 HOH A1440 HOH A1579 HOH A1643 SITE 3 AC3 10 HOH A1673 HOH A1718 SITE 1 AC4 6 TYR A 575 TYR A 580 ASP A 581 L5E A1102 SITE 2 AC4 6 HOH A1293 HOH A1426 SITE 1 AC5 3 ASN A 361 ARG A 373 HOH A1979 CRYST1 77.161 109.662 113.519 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012960 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008809 0.00000