HEADER LIGASE 23-JUL-19 6SC6 TITLE DAB3/HOIP-RBR APO STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE RNF31; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HOIL-1-INTERACTING PROTEIN,HOIP,RING FINGER PROTEIN 31,RING- COMPND 5 TYPE E3 UBIQUITIN TRANSFERASE RNF31,ZINC IN-BETWEEN-RING-FINGER COMPND 6 UBIQUITIN-ASSOCIATED DOMAIN PROTEIN; COMPND 7 EC: 2.3.2.31; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SINGLE DOMAIN ANTIBODY; COMPND 11 CHAIN: B, C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNF31, ZIBRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN SINGLE DOMAIN ANTIBODY, HOIP, RBR, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.-C.I.TSAI,D.HOUSE,K.RITTINGER REVDAT 4 24-JAN-24 6SC6 1 REMARK REVDAT 3 29-JAN-20 6SC6 1 JRNL REVDAT 2 18-DEC-19 6SC6 1 JRNL REVDAT 1 27-NOV-19 6SC6 0 JRNL AUTH Y.I.TSAI,H.JOHANSSON,D.DIXON,S.MARTIN,C.W.CHUNG,J.CLARKSON, JRNL AUTH 2 D.HOUSE,K.RITTINGER JRNL TITL SINGLE-DOMAIN ANTIBODIES AS CRYSTALLIZATION CHAPERONES TO JRNL TITL 2 ENABLE STRUCTURE-BASED INHIBITOR DEVELOPMENT FOR RBR E3 JRNL TITL 3 UBIQUITIN LIGASES. JRNL REF CELL CHEM BIOL V. 27 83 2020 JRNL REFN ESSN 2451-9456 JRNL PMID 31813847 JRNL DOI 10.1016/J.CHEMBIOL.2019.11.007 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 33398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.790 REMARK 3 FREE R VALUE TEST SET COUNT : 1600 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 60.4800 - 5.0031 1.00 3101 156 0.1665 0.2074 REMARK 3 2 5.0031 - 3.9714 1.00 2950 169 0.1463 0.1620 REMARK 3 3 3.9714 - 3.4694 1.00 2938 133 0.1876 0.2375 REMARK 3 4 3.4694 - 3.1522 1.00 2909 144 0.2141 0.2911 REMARK 3 5 3.1522 - 2.9263 1.00 2914 141 0.2382 0.3143 REMARK 3 6 2.9263 - 2.7538 0.99 2853 147 0.2435 0.2976 REMARK 3 7 2.7538 - 2.6159 0.99 2873 154 0.2433 0.3111 REMARK 3 8 2.6159 - 2.5020 0.99 2863 125 0.2439 0.2473 REMARK 3 9 2.5020 - 2.4057 0.98 2818 154 0.2613 0.3624 REMARK 3 10 2.4057 - 2.3226 0.98 2814 144 0.2636 0.3272 REMARK 3 11 2.3226 - 2.2500 0.96 2765 133 0.2931 0.3628 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -27.7800 63.6983 40.7439 REMARK 3 T TENSOR REMARK 3 T11: 0.2438 T22: 0.2722 REMARK 3 T33: 0.3425 T12: -0.0661 REMARK 3 T13: -0.0489 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 0.5767 L22: 0.3499 REMARK 3 L33: 1.5810 L12: -0.0079 REMARK 3 L13: -0.3327 L23: 0.1505 REMARK 3 S TENSOR REMARK 3 S11: -0.0972 S12: 0.1681 S13: 0.1524 REMARK 3 S21: -0.1083 S22: 0.0588 S23: 0.0737 REMARK 3 S31: -0.1471 S32: -0.0216 S33: 0.0220 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN B REMARK 3 SELECTION : (CHAIN C AND (RESID 1 THROUGH 12 OR REMARK 3 (RESID 13 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 14 THROUGH 88 OR (RESID 89 AND REMARK 3 (NAME N OR NAME CA OR NAME C OR NAME O OR REMARK 3 NAME CB OR NAME CG )) OR RESID 90 THROUGH REMARK 3 111 OR (RESID 112 AND (NAME N OR NAME CA REMARK 3 OR NAME C OR NAME O OR NAME CB OR NAME CG REMARK 3 )) OR RESID 113 THROUGH 119)) REMARK 3 ATOM PAIRS NUMBER : 722 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SC6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1292103460. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33752 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 60.482 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02856 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.26090 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4LJQ, 6SCA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM CHLORIDE, REMARK 280 HEPES, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.97400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.74500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 120.96350 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.97400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.74500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 120.96350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.97400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.74500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 120.96350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.97400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.74500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 120.96350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -114.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 959 REMARK 465 GLY A 960 REMARK 465 ALA A 961 REMARK 465 ARG A 962 REMARK 465 ALA A 963 REMARK 465 VAL A 964 REMARK 465 PRO A 965 REMARK 465 GLY A 966 REMARK 465 GLY A 967 REMARK 465 ARG A 1071 REMARK 465 LYS A 1072 REMARK 465 SER B 120 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 710 NE CZ NH1 NH2 REMARK 470 ARG A 749 NE CZ NH1 NH2 REMARK 470 LEU A 752 CG CD1 CD2 REMARK 470 GLN A 757 CD OE1 NE2 REMARK 470 ARG A 827 NE CZ NH1 NH2 REMARK 470 ARG A 849 CD NE CZ NH1 NH2 REMARK 470 GLU A 854 CD OE1 OE2 REMARK 470 ARG A 894 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 917 NE CZ NH1 NH2 REMARK 470 LYS A 975 CE NZ REMARK 470 GLU A 984 OE1 OE2 REMARK 470 GLN A1055 CD OE1 NE2 REMARK 470 ARG A1070 CD NE CZ NH1 NH2 REMARK 470 GLN B 13 CD OE1 NE2 REMARK 470 GLU B 89 CD OE1 OE2 REMARK 470 GLN B 112 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 736 -12.55 -142.65 REMARK 500 ASP A 751 46.37 -78.48 REMARK 500 LEU A 752 65.63 -66.81 REMARK 500 ASP A 755 5.22 -66.30 REMARK 500 VAL A 789 -50.82 -124.71 REMARK 500 ARG A 894 8.51 58.34 REMARK 500 ALA A 907 -176.49 -65.63 REMARK 500 ASN A 979 63.34 -116.17 REMARK 500 ALA B 92 161.97 179.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 699 SG REMARK 620 2 CYS A 702 SG 99.8 REMARK 620 3 CYS A 722 SG 111.7 124.6 REMARK 620 4 CYS A 725 SG 125.9 104.0 93.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 717 SG REMARK 620 2 CYS A 719 SG 114.7 REMARK 620 3 CYS A 744 SG 94.9 122.5 REMARK 620 4 CYS A 747 SG 100.8 118.4 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 799 SG REMARK 620 2 CYS A 802 SG 111.2 REMARK 620 3 CYS A 817 SG 103.6 95.3 REMARK 620 4 CYS A 820 SG 106.8 125.0 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 825 SG REMARK 620 2 CYS A 828 SG 105.8 REMARK 620 3 HIS A 836 NE2 107.8 114.1 REMARK 620 4 CYS A 841 SG 105.6 114.0 109.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 871 SG REMARK 620 2 CYS A 874 SG 111.3 REMARK 620 3 CYS A 890 SG 104.8 98.3 REMARK 620 4 CYS A 893 SG 100.3 132.0 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1106 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 898 SG REMARK 620 2 CYS A 901 SG 110.7 REMARK 620 3 HIS A 926 ND1 97.8 110.4 REMARK 620 4 CYS A 930 SG 104.1 115.2 116.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1107 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 911 SG REMARK 620 2 CYS A 916 SG 127.4 REMARK 620 3 HIS A 923 NE2 109.2 99.3 REMARK 620 4 HIS A 925 NE2 96.5 116.4 107.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 969 SG REMARK 620 2 CYS A 986 SG 113.4 REMARK 620 3 CYS A 998 SG 113.8 109.1 REMARK 620 4 HIS A1001 ND1 115.7 106.9 96.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 DBREF 6SC6 A 697 1072 UNP Q96EP0 RNF31_HUMAN 697 1072 DBREF 6SC6 B 1 120 PDB 6SC6 6SC6 1 120 DBREF 6SC6 C 1 120 PDB 6SC6 6SC6 1 120 SEQRES 1 A 376 GLN GLU CYS ALA VAL CYS GLY TRP ALA LEU PRO HIS ASN SEQRES 2 A 376 ARG MET GLN ALA LEU THR SER CYS GLU CYS THR ILE CYS SEQRES 3 A 376 PRO ASP CYS PHE ARG GLN HIS PHE THR ILE ALA LEU LYS SEQRES 4 A 376 GLU LYS HIS ILE THR ASP MET VAL CYS PRO ALA CYS GLY SEQRES 5 A 376 ARG PRO ASP LEU THR ASP ASP THR GLN LEU LEU SER TYR SEQRES 6 A 376 PHE SER THR LEU ASP ILE GLN LEU ARG GLU SER LEU GLU SEQRES 7 A 376 PRO ASP ALA TYR ALA LEU PHE HIS LYS LYS LEU THR GLU SEQRES 8 A 376 GLY VAL LEU MET ARG ASP PRO LYS PHE LEU TRP CYS ALA SEQRES 9 A 376 GLN CYS SER PHE GLY PHE ILE TYR GLU ARG GLU GLN LEU SEQRES 10 A 376 GLU ALA THR CYS PRO GLN CYS HIS GLN THR PHE CYS VAL SEQRES 11 A 376 ARG CYS LYS ARG GLN TRP GLU GLU GLN HIS ARG GLY ARG SEQRES 12 A 376 SER CYS GLU ASP PHE GLN ASN TRP LYS ARG MET ASN ASP SEQRES 13 A 376 PRO GLU TYR GLN ALA GLN GLY LEU ALA MET TYR LEU GLN SEQRES 14 A 376 GLU ASN GLY ILE ASP CYS PRO LYS CYS LYS PHE SER TYR SEQRES 15 A 376 ALA LEU ALA ARG GLY GLY CYS MET HIS PHE HIS CYS THR SEQRES 16 A 376 GLN CYS ARG HIS GLN PHE CYS SER GLY CYS TYR ASN ALA SEQRES 17 A 376 PHE TYR ALA LYS ASN LYS CYS PRO GLU PRO ASN CYS ARG SEQRES 18 A 376 VAL LYS LYS SER LEU HIS GLY HIS HIS PRO ARG ASP CYS SEQRES 19 A 376 LEU PHE TYR LEU ARG ASP TRP THR ALA LEU ARG LEU GLN SEQRES 20 A 376 LYS LEU LEU GLN ASP ASN ASN VAL MET PHE ASN THR GLU SEQRES 21 A 376 PRO PRO ALA GLY ALA ARG ALA VAL PRO GLY GLY GLY CYS SEQRES 22 A 376 ARG VAL ILE GLU GLN LYS GLU VAL PRO ASN GLY LEU ARG SEQRES 23 A 376 ASP GLU ALA CYS GLY LYS GLU THR PRO ALA GLY TYR ALA SEQRES 24 A 376 GLY LEU CYS GLN ALA HIS TYR LYS GLU TYR LEU VAL SER SEQRES 25 A 376 LEU ILE ASN ALA HIS SER LEU ASP PRO ALA THR LEU TYR SEQRES 26 A 376 GLU VAL GLU GLU LEU GLU THR ALA THR GLU ARG TYR LEU SEQRES 27 A 376 HIS VAL ARG PRO GLN PRO LEU ALA GLY GLU ASP PRO PRO SEQRES 28 A 376 ALA TYR GLN ALA ARG LEU LEU GLN LYS LEU THR GLU GLU SEQRES 29 A 376 VAL PRO LEU GLY GLN SER ILE PRO ARG ARG ARG LYS SEQRES 1 B 120 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 120 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 120 PHE THR PHE ARG GLY TYR SER MET ALA TRP VAL ARG GLN SEQRES 4 B 120 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER THR ILE SER SEQRES 5 B 120 PRO ILE GLY THR TYR THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 120 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 B 120 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 120 ALA VAL TYR TYR CYS ALA LYS GLY SER TYR SER ARG GLY SEQRES 9 B 120 THR PRO PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 B 120 VAL SER SER SEQRES 1 C 120 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 120 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 120 PHE THR PHE ARG GLY TYR SER MET ALA TRP VAL ARG GLN SEQRES 4 C 120 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER THR ILE SER SEQRES 5 C 120 PRO ILE GLY THR TYR THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 C 120 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 C 120 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 C 120 ALA VAL TYR TYR CYS ALA LYS GLY SER TYR SER ARG GLY SEQRES 9 C 120 THR PRO PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 C 120 VAL SER SER HET ZN A1101 1 HET ZN A1102 1 HET ZN A1103 1 HET ZN A1104 1 HET ZN A1105 1 HET ZN A1106 1 HET ZN A1107 1 HET ZN A1108 1 HET SO4 A1109 5 HET SO4 A1110 5 HET SO4 A1111 5 HET CL A1112 1 HET CL A1113 1 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 4 ZN 8(ZN 2+) FORMUL 12 SO4 5(O4 S 2-) FORMUL 15 CL 2(CL 1-) FORMUL 19 HOH *169(H2 O) HELIX 1 AA1 PRO A 707 MET A 711 5 5 HELIX 2 AA2 CYS A 722 LYS A 737 1 16 HELIX 3 AA3 HIS A 738 MET A 742 5 5 HELIX 4 AA4 GLN A 757 LEU A 773 1 17 HELIX 5 AA5 GLU A 774 VAL A 789 1 16 HELIX 6 AA6 GLU A 833 ARG A 837 5 5 HELIX 7 AA7 SER A 840 MET A 850 1 11 HELIX 8 AA8 ASP A 852 GLN A 858 1 7 HELIX 9 AA9 GLY A 859 ASN A 867 1 9 HELIX 10 AB1 CYS A 930 ARG A 935 1 6 HELIX 11 AB2 THR A 938 ASP A 948 1 11 HELIX 12 AB3 CYS A 998 HIS A 1013 1 16 HELIX 13 AB4 ASP A 1016 TYR A 1021 5 6 HELIX 14 AB5 GLU A 1022 LEU A 1034 1 13 HELIX 15 AB6 ASP A 1045 VAL A 1061 1 17 HELIX 16 AB7 THR B 28 TYR B 32 5 5 HELIX 17 AB8 ARG B 87 THR B 91 5 5 HELIX 18 AB9 THR C 28 TYR C 32 5 5 HELIX 19 AC1 ASP C 62 LYS C 65 5 4 HELIX 20 AC2 ARG C 87 THR C 91 5 5 SHEET 1 A 2 PHE A 796 TRP A 798 0 SHEET 2 A 2 GLY A 805 ILE A 807 -1 SHEET 1 B 2 GLU A 814 THR A 816 0 SHEET 2 B 2 THR A 823 CYS A 825 -1 SHEET 1 C 2 HIS A 887 HIS A 889 0 SHEET 2 C 2 GLN A 896 CYS A 898 -1 SHEET 1 D 2 ILE A 972 VAL A 977 0 SHEET 2 D 2 GLY A 980 ALA A 985 -1 SHEET 1 E 4 GLN B 3 SER B 7 0 SHEET 2 E 4 LEU B 18 SER B 25 -1 SHEET 3 E 4 THR B 78 MET B 83 -1 SHEET 4 E 4 PHE B 68 ASP B 73 -1 SHEET 1 F 5 THR B 114 VAL B 116 0 SHEET 2 F 5 ALA B 92 LYS B 98 -1 SHEET 3 F 5 MET B 34 GLN B 39 -1 SHEET 4 F 5 GLU B 46 ILE B 51 -1 SHEET 5 F 5 THR B 58 TYR B 60 -1 SHEET 1 G 2 ALA B 97 GLY B 99 0 SHEET 2 G 2 PHE B 107 TRP B 110 -1 SHEET 1 H 4 GLN C 3 SER C 7 0 SHEET 2 H 4 LEU C 18 SER C 25 -1 SHEET 3 H 4 THR C 78 MET C 83 -1 SHEET 4 H 4 PHE C 68 ASP C 73 -1 SHEET 1 I 5 THR C 114 VAL C 116 0 SHEET 2 I 5 ALA C 92 LYS C 98 -1 SHEET 3 I 5 MET C 34 GLN C 39 -1 SHEET 4 I 5 GLU C 46 ILE C 51 -1 SHEET 5 I 5 THR C 58 TYR C 60 -1 SHEET 1 J 2 ALA C 97 GLY C 99 0 SHEET 2 J 2 PHE C 107 TRP C 110 -1 SSBOND 1 CYS B 22 CYS B 96 1555 1555 2.03 SSBOND 2 CYS C 22 CYS C 96 1555 1555 2.04 LINK SG CYS A 699 ZN ZN A1101 1555 1555 2.50 LINK SG CYS A 702 ZN ZN A1101 1555 1555 2.34 LINK SG CYS A 717 ZN ZN A1102 1555 1555 2.31 LINK SG CYS A 719 ZN ZN A1102 1555 1555 2.41 LINK SG CYS A 722 ZN ZN A1101 1555 1555 2.24 LINK SG CYS A 725 ZN ZN A1101 1555 1555 2.80 LINK SG CYS A 744 ZN ZN A1102 1555 1555 2.51 LINK SG CYS A 747 ZN ZN A1102 1555 1555 2.34 LINK SG CYS A 799 ZN ZN A1103 1555 1555 2.30 LINK SG CYS A 802 ZN ZN A1103 1555 1555 2.37 LINK SG CYS A 817 ZN ZN A1103 1555 1555 2.45 LINK SG CYS A 820 ZN ZN A1103 1555 1555 2.30 LINK SG CYS A 825 ZN ZN A1104 1555 1555 2.40 LINK SG CYS A 828 ZN ZN A1104 1555 1555 2.38 LINK NE2 HIS A 836 ZN ZN A1104 1555 1555 2.05 LINK SG CYS A 841 ZN ZN A1104 1555 1555 2.41 LINK SG CYS A 871 ZN ZN A1105 1555 1555 2.43 LINK SG CYS A 874 ZN ZN A1105 1555 1555 2.20 LINK SG CYS A 890 ZN ZN A1105 1555 1555 2.40 LINK SG CYS A 893 ZN ZN A1105 1555 1555 2.02 LINK SG CYS A 898 ZN ZN A1106 1555 1555 2.38 LINK SG CYS A 901 ZN ZN A1106 1555 1555 2.36 LINK SG CYS A 911 ZN ZN A1107 1555 1555 2.17 LINK SG CYS A 916 ZN ZN A1107 1555 1555 2.18 LINK NE2 HIS A 923 ZN ZN A1107 1555 1555 2.01 LINK NE2 HIS A 925 ZN ZN A1107 1555 1555 2.02 LINK ND1 HIS A 926 ZN ZN A1106 1555 1555 2.08 LINK SG CYS A 930 ZN ZN A1106 1555 1555 2.36 LINK SG CYS A 969 ZN ZN A1108 1555 1555 2.39 LINK SG CYS A 986 ZN ZN A1108 1555 1555 2.41 LINK SG CYS A 998 ZN ZN A1108 1555 1555 2.26 LINK ND1 HIS A1001 ZN ZN A1108 1555 1555 2.07 SITE 1 AC1 4 CYS A 699 CYS A 702 CYS A 722 CYS A 725 SITE 1 AC2 4 CYS A 717 CYS A 719 CYS A 744 CYS A 747 SITE 1 AC3 4 CYS A 799 CYS A 802 CYS A 817 CYS A 820 SITE 1 AC4 4 CYS A 825 CYS A 828 HIS A 836 CYS A 841 SITE 1 AC5 4 CYS A 871 CYS A 874 CYS A 890 CYS A 893 SITE 1 AC6 4 CYS A 898 CYS A 901 HIS A 926 CYS A 930 SITE 1 AC7 4 CYS A 911 CYS A 916 HIS A 923 HIS A 925 SITE 1 AC8 4 CYS A 969 CYS A 986 CYS A 998 HIS A1001 SITE 1 AC9 9 ASN A 903 PRO A 927 GLY A1064 GLN A1065 SITE 2 AC9 9 HOH A1203 HOH A1213 HOH A1227 HOH A1228 SITE 3 AC9 9 HOH A1239 SITE 1 AD1 5 GLY A 884 CYS A 885 MET A 886 PHE A 932 SITE 2 AD1 5 ARG A 935 SITE 1 AD2 1 ARG A1032 SITE 1 AD3 3 TRP A 798 LYS A 829 GLY B 104 SITE 1 AD4 4 GLY A 900 CYS A 930 LEU A 931 ASN A1011 SITE 1 AD5 5 HOH A1223 SER B 52 PRO B 53 ILE B 54 SITE 2 AD5 5 THR B 56 SITE 1 AD6 3 PHE B 27 THR B 28 TYR B 32 CRYST1 65.948 87.490 241.927 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015164 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004133 0.00000