HEADER HYDROLASE 05-AUG-19 6SH6 TITLE CRYSTAL STRUCTURE OF THE HUMAN DEAH-HELICASE DHX15 IN COMPLEX WITH THE TITLE 2 NKRF G-PATCH BOUND TO ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE DHX15; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATP-DEPENDENT RNA HELICASE #46,DEAH BOX PROTEIN 15; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NF-KAPPA-B-REPRESSING FACTOR; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NFKB-REPRESSING FACTOR,PROTEIN ITBA4,TRANSCRIPTION FACTOR COMPND 11 NRF; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHX15, DBP1, DDX15; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: NKRF, ITBA4, NRF; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: STAR KEYWDS G-PATCH, DEAH HELICASE, DEXH HELICASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.JONAS,M.K.STUDER,L.IVANOVIC REVDAT 2 24-JAN-24 6SH6 1 LINK REVDAT 1 22-APR-20 6SH6 0 JRNL AUTH M.K.STUDER,L.IVANOVIC,M.E.WEBER,S.MARTI,S.JONAS JRNL TITL STRUCTURAL BASIS FOR DEAH-HELICASE ACTIVATION BY G-PATCH JRNL TITL 2 PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 7159 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32179686 JRNL DOI 10.1073/PNAS.1913880117 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 68686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4000 - 5.3400 1.00 2911 148 0.1739 0.2093 REMARK 3 2 5.3400 - 4.2400 1.00 2791 154 0.1471 0.1624 REMARK 3 3 4.2400 - 3.7000 1.00 2770 142 0.1684 0.2127 REMARK 3 4 3.7000 - 3.3700 1.00 2748 150 0.1825 0.2323 REMARK 3 5 3.3700 - 3.1200 1.00 2741 136 0.2108 0.2687 REMARK 3 6 3.1200 - 2.9400 1.00 2708 147 0.2104 0.2516 REMARK 3 7 2.9400 - 2.7900 1.00 2731 142 0.1995 0.2314 REMARK 3 8 2.7900 - 2.6700 1.00 2714 147 0.2003 0.2708 REMARK 3 9 2.6700 - 2.5700 1.00 2724 142 0.2070 0.2622 REMARK 3 10 2.5700 - 2.4800 1.00 2728 143 0.2016 0.2340 REMARK 3 11 2.4800 - 2.4000 1.00 2715 149 0.2158 0.2251 REMARK 3 12 2.4000 - 2.3300 1.00 2718 138 0.2095 0.2709 REMARK 3 13 2.3300 - 2.2700 1.00 2697 129 0.2240 0.2940 REMARK 3 14 2.2700 - 2.2200 1.00 2702 140 0.2795 0.3324 REMARK 3 15 2.2200 - 2.1700 1.00 2707 142 0.2437 0.3138 REMARK 3 16 2.1700 - 2.1200 1.00 2688 130 0.2585 0.3306 REMARK 3 17 2.1200 - 2.0800 1.00 2721 145 0.2704 0.3350 REMARK 3 18 2.0800 - 2.0400 1.00 2673 159 0.2864 0.3138 REMARK 3 19 2.0400 - 2.0000 1.00 2696 131 0.3056 0.3407 REMARK 3 20 2.0000 - 1.9700 1.00 2703 149 0.3364 0.3782 REMARK 3 21 1.9700 - 1.9400 1.00 2675 137 0.3682 0.4092 REMARK 3 22 1.9400 - 1.9100 1.00 2708 141 0.4370 0.4613 REMARK 3 23 1.9100 - 1.8800 1.00 2667 140 0.4290 0.4861 REMARK 3 24 1.8800 - 1.8500 0.97 2646 123 0.4652 0.4924 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.313 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5987 REMARK 3 ANGLE : 1.042 8118 REMARK 3 CHIRALITY : 0.062 906 REMARK 3 PLANARITY : 0.007 1050 REMARK 3 DIHEDRAL : 17.234 3713 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 318 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6199 -15.6213 9.0462 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.2474 REMARK 3 T33: 0.2397 T12: -0.0137 REMARK 3 T13: 0.0282 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.3404 L22: 1.6521 REMARK 3 L33: 2.4855 L12: -0.1025 REMARK 3 L13: -0.0428 L23: -0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.0592 S13: -0.0888 REMARK 3 S21: -0.1337 S22: 0.0207 S23: -0.1022 REMARK 3 S31: 0.1900 S32: 0.0703 S33: 0.0899 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 319 THROUGH 414 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4079 -43.2575 20.6763 REMARK 3 T TENSOR REMARK 3 T11: 1.1545 T22: 0.4988 REMARK 3 T33: 0.5836 T12: -0.0609 REMARK 3 T13: 0.2419 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.1568 L22: 1.3059 REMARK 3 L33: 1.3731 L12: -0.1253 REMARK 3 L13: 0.1676 L23: 0.1696 REMARK 3 S TENSOR REMARK 3 S11: -0.3603 S12: -0.1129 S13: -0.6577 REMARK 3 S21: 0.1277 S22: 0.0737 S23: 0.0897 REMARK 3 S31: 1.0366 S32: -0.0871 S33: 0.0572 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 415 THROUGH 499 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2224 -28.2843 20.1928 REMARK 3 T TENSOR REMARK 3 T11: 0.5361 T22: 0.4645 REMARK 3 T33: 0.4726 T12: -0.1321 REMARK 3 T13: 0.0234 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 1.1943 L22: 1.2082 REMARK 3 L33: 3.0172 L12: 1.0212 REMARK 3 L13: 0.2131 L23: -0.5235 REMARK 3 S TENSOR REMARK 3 S11: -0.1823 S12: 0.0874 S13: -0.0299 REMARK 3 S21: 0.0506 S22: -0.0954 S23: 0.4805 REMARK 3 S31: 0.6425 S32: -0.6537 S33: 0.0601 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 500 THROUGH 789 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7302 -16.7878 46.0278 REMARK 3 T TENSOR REMARK 3 T11: 0.3640 T22: 0.2892 REMARK 3 T33: 0.2970 T12: -0.0468 REMARK 3 T13: 0.0443 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.5908 L22: 0.9521 REMARK 3 L33: 1.5554 L12: -0.1080 REMARK 3 L13: 0.0152 L23: -0.4133 REMARK 3 S TENSOR REMARK 3 S11: 0.0090 S12: -0.0339 S13: -0.0297 REMARK 3 S21: 0.1947 S22: -0.0576 S23: 0.0933 REMARK 3 S31: -0.0228 S32: -0.0591 S33: 0.0679 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 553 THROUGH 561 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6369 5.3917 38.9209 REMARK 3 T TENSOR REMARK 3 T11: 1.0064 T22: 0.9725 REMARK 3 T33: 1.0950 T12: 0.1129 REMARK 3 T13: 0.0727 T23: -0.2487 REMARK 3 L TENSOR REMARK 3 L11: 0.2768 L22: 0.6046 REMARK 3 L33: 0.6254 L12: 0.4088 REMARK 3 L13: -0.4011 L23: -0.5959 REMARK 3 S TENSOR REMARK 3 S11: 0.0711 S12: -0.3414 S13: 0.2853 REMARK 3 S21: 0.5948 S22: 0.0137 S23: 0.4735 REMARK 3 S31: -1.0127 S32: -0.8287 S33: -0.0733 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 562 THROUGH 571 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0287 4.6287 27.9530 REMARK 3 T TENSOR REMARK 3 T11: 1.1673 T22: 0.7944 REMARK 3 T33: 0.8295 T12: 0.1825 REMARK 3 T13: 0.2104 T23: 0.1274 REMARK 3 L TENSOR REMARK 3 L11: 0.8398 L22: 2.3158 REMARK 3 L33: 6.2182 L12: 1.3631 REMARK 3 L13: 0.8384 L23: 0.6170 REMARK 3 S TENSOR REMARK 3 S11: 0.1706 S12: 0.1166 S13: 0.4598 REMARK 3 S21: 0.3385 S22: 0.0141 S23: 0.4453 REMARK 3 S31: -0.8778 S32: -0.8621 S33: -0.0667 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 572 THROUGH 586 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1034 -12.2166 29.1803 REMARK 3 T TENSOR REMARK 3 T11: 1.1352 T22: 1.1290 REMARK 3 T33: 0.8808 T12: 0.0800 REMARK 3 T13: 0.1205 T23: -0.1277 REMARK 3 L TENSOR REMARK 3 L11: 1.1471 L22: 3.8528 REMARK 3 L33: 3.0760 L12: 0.7046 REMARK 3 L13: -0.4860 L23: -1.3044 REMARK 3 S TENSOR REMARK 3 S11: 0.1480 S12: 0.1932 S13: 0.0598 REMARK 3 S21: 0.4852 S22: 0.2439 S23: 0.7341 REMARK 3 S31: 0.1588 S32: -0.9916 S33: -0.1280 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 587 THROUGH 593 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8367 -33.8712 31.2299 REMARK 3 T TENSOR REMARK 3 T11: 1.3025 T22: 1.2754 REMARK 3 T33: 0.7166 T12: -0.1299 REMARK 3 T13: -0.0008 T23: -0.1233 REMARK 3 L TENSOR REMARK 3 L11: 0.2510 L22: 0.7499 REMARK 3 L33: 1.7856 L12: 0.1747 REMARK 3 L13: -0.6427 L23: -0.4366 REMARK 3 S TENSOR REMARK 3 S11: -0.0397 S12: -0.1691 S13: -0.1230 REMARK 3 S21: 0.2134 S22: 0.2068 S23: 0.2753 REMARK 3 S31: 0.7173 S32: -0.6311 S33: -0.0213 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103706. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 46.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5XDR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M 1,6-HEXANEDIOL, 0.02 M 1 REMARK 280 -BUTANOL, 0.02 M (RS)-1,2-PROPANEDIOL, 0.02 M 2-PROPANOL, 0.02 M REMARK 280 1,4-BUTANEDIOL, 0.02 M 1,3-PROPANEDIOL, 0.1 M MES/IMIDAZOLE PH REMARK 280 6.5, 10% W/V PEG 8000, 20% V/V ETHYLENE GLYCOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.41950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.41950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 41.42750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.60600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 41.42750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.60600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 106.41950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 41.42750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.60600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 106.41950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 41.42750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.60600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 107 REMARK 465 LYS A 408 REMARK 465 LYS A 790 REMARK 465 GLU A 791 REMARK 465 TYR A 792 REMARK 465 SER A 793 REMARK 465 GLN A 794 REMARK 465 TYR A 795 REMARK 465 GLY B 537 REMARK 465 PRO B 538 REMARK 465 HIS B 539 REMARK 465 MET B 540 REMARK 465 ALA B 541 REMARK 465 GLU B 542 REMARK 465 GLU B 543 REMARK 465 ALA B 544 REMARK 465 TYR B 545 REMARK 465 LYS B 546 REMARK 465 GLN B 547 REMARK 465 GLN B 548 REMARK 465 ILE B 549 REMARK 465 LYS B 550 REMARK 465 GLU B 551 REMARK 465 ASP B 552 REMARK 465 ASP B 594 REMARK 465 VAL B 595 REMARK 465 GLU B 596 REMARK 465 ARG B 597 REMARK 465 VAL B 598 REMARK 465 ASN B 599 REMARK 465 LYS B 600 REMARK 465 ILE B 601 REMARK 465 ALA B 602 REMARK 465 LYS B 603 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1005 O HOH A 1184 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 215 -115.40 -88.07 REMARK 500 ASP A 248 79.58 -155.23 REMARK 500 PHE A 304 44.16 -90.76 REMARK 500 ASP A 374 -8.51 -58.59 REMARK 500 GLU A 379 -1.96 66.56 REMARK 500 ARG A 504 24.37 -140.25 REMARK 500 CYS A 583 24.21 -145.15 REMARK 500 GLN A 598 127.66 -28.45 REMARK 500 ALA A 606 50.71 -140.55 REMARK 500 GLN A 700 73.80 -108.91 REMARK 500 LYS A 714 -54.28 70.85 REMARK 500 LEU A 741 79.04 -111.77 REMARK 500 THR A 742 -142.12 -106.98 REMARK 500 THR A 749 89.89 64.38 REMARK 500 THR B 565 -75.59 -95.36 REMARK 500 LYS B 587 -136.97 56.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 803 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 167 OG1 REMARK 620 2 ADP A 801 O2B 93.5 REMARK 620 3 HOH A 944 O 176.2 88.6 REMARK 620 4 HOH A 972 O 86.0 104.2 90.4 REMARK 620 5 HOH A 995 O 96.9 88.4 86.4 166.8 REMARK 620 6 HOH A1115 O 90.3 169.7 88.1 85.6 81.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 803 DBREF 6SH6 A 113 795 UNP O43143 DHX15_HUMAN 113 795 DBREF 6SH6 B 541 603 UNP O15226 NKRF_HUMAN 541 603 SEQADV 6SH6 GLY A 107 UNP O43143 EXPRESSION TAG SEQADV 6SH6 PRO A 108 UNP O43143 EXPRESSION TAG SEQADV 6SH6 HIS A 109 UNP O43143 EXPRESSION TAG SEQADV 6SH6 MET A 110 UNP O43143 EXPRESSION TAG SEQADV 6SH6 LEU A 111 UNP O43143 EXPRESSION TAG SEQADV 6SH6 GLU A 112 UNP O43143 EXPRESSION TAG SEQADV 6SH6 GLY B 537 UNP O15226 EXPRESSION TAG SEQADV 6SH6 PRO B 538 UNP O15226 EXPRESSION TAG SEQADV 6SH6 HIS B 539 UNP O15226 EXPRESSION TAG SEQADV 6SH6 MET B 540 UNP O15226 EXPRESSION TAG SEQRES 1 A 689 GLY PRO HIS MET LEU GLU GLN CYS ILE ASN PRO PHE THR SEQRES 2 A 689 ASN LEU PRO HIS THR PRO ARG TYR TYR ASP ILE LEU LYS SEQRES 3 A 689 LYS ARG LEU GLN LEU PRO VAL TRP GLU TYR LYS ASP ARG SEQRES 4 A 689 PHE THR ASP ILE LEU VAL ARG HIS GLN SER PHE VAL LEU SEQRES 5 A 689 VAL GLY GLU THR GLY SER GLY LYS THR THR GLN ILE PRO SEQRES 6 A 689 GLN TRP CYS VAL GLU TYR MET ARG SER LEU PRO GLY PRO SEQRES 7 A 689 LYS ARG GLY VAL ALA CYS THR GLN PRO ARG ARG VAL ALA SEQRES 8 A 689 ALA MET SER VAL ALA GLN ARG VAL ALA ASP GLU MET ASP SEQRES 9 A 689 VAL MET LEU GLY GLN GLU VAL GLY TYR SER ILE ARG PHE SEQRES 10 A 689 GLU ASP CYS SER SER ALA LYS THR ILE LEU LYS TYR MET SEQRES 11 A 689 THR ASP GLY MET LEU LEU ARG GLU ALA MET ASN ASP PRO SEQRES 12 A 689 LEU LEU GLU ARG TYR GLY VAL ILE ILE LEU ASP GLU ALA SEQRES 13 A 689 HIS GLU ARG THR LEU ALA THR ASP ILE LEU MET GLY VAL SEQRES 14 A 689 LEU LYS GLU VAL VAL ARG GLN ARG SER ASP LEU LYS VAL SEQRES 15 A 689 ILE VAL MET SER ALA THR LEU ASP ALA GLY LYS PHE GLN SEQRES 16 A 689 ILE TYR PHE ASP ASN CYS PRO LEU LEU THR ILE PRO GLY SEQRES 17 A 689 ARG THR HIS PRO VAL GLU ILE PHE TYR THR PRO GLU PRO SEQRES 18 A 689 GLU ARG ASP TYR LEU GLU ALA ALA ILE ARG THR VAL ILE SEQRES 19 A 689 GLN ILE HIS MET CYS GLU GLU GLU GLU GLY ASP LEU LEU SEQRES 20 A 689 LEU PHE LEU THR GLY GLN GLU GLU ILE ASP GLU ALA CYS SEQRES 21 A 689 LYS ARG ILE LYS ARG GLU VAL ASP ASP LEU GLY PRO GLU SEQRES 22 A 689 VAL GLY ASP ILE LYS ILE ILE PRO LEU TYR SER THR LEU SEQRES 23 A 689 PRO PRO GLN GLN GLN GLN ARG ILE PHE GLU PRO PRO PRO SEQRES 24 A 689 PRO LYS LYS GLN ASN GLY ALA ILE GLY ARG LYS VAL VAL SEQRES 25 A 689 VAL SER THR ASN ILE ALA GLU THR SER LEU THR ILE ASP SEQRES 26 A 689 GLY VAL VAL PHE VAL ILE ASP PRO GLY PHE ALA LYS GLN SEQRES 27 A 689 LYS VAL TYR ASN PRO ARG ILE ARG VAL GLU SER LEU LEU SEQRES 28 A 689 VAL THR ALA ILE SER LYS ALA SER ALA GLN GLN ARG ALA SEQRES 29 A 689 GLY ARG ALA GLY ARG THR ARG PRO GLY LYS CYS PHE ARG SEQRES 30 A 689 LEU TYR THR GLU LYS ALA TYR LYS THR GLU MET GLN ASP SEQRES 31 A 689 ASN THR TYR PRO GLU ILE LEU ARG SER ASN LEU GLY SER SEQRES 32 A 689 VAL VAL LEU GLN LEU LYS LYS LEU GLY ILE ASP ASP LEU SEQRES 33 A 689 VAL HIS PHE ASP PHE MET ASP PRO PRO ALA PRO GLU THR SEQRES 34 A 689 LEU MET ARG ALA LEU GLU LEU LEU ASN TYR LEU ALA ALA SEQRES 35 A 689 LEU ASN ASP ASP GLY ASP LEU THR GLU LEU GLY SER MET SEQRES 36 A 689 MET ALA GLU PHE PRO LEU ASP PRO GLN LEU ALA LYS MET SEQRES 37 A 689 VAL ILE ALA SER CYS ASP TYR ASN CYS SER ASN GLU VAL SEQRES 38 A 689 LEU SER ILE THR ALA MET LEU SER VAL PRO GLN CYS PHE SEQRES 39 A 689 VAL ARG PRO THR GLU ALA LYS LYS ALA ALA ASP GLU ALA SEQRES 40 A 689 LYS MET ARG PHE ALA HIS ILE ASP GLY ASP HIS LEU THR SEQRES 41 A 689 LEU LEU ASN VAL TYR HIS ALA PHE LYS GLN ASN HIS GLU SEQRES 42 A 689 SER VAL GLN TRP CYS TYR ASP ASN PHE ILE ASN TYR ARG SEQRES 43 A 689 SER LEU MET SER ALA ASP ASN VAL ARG GLN GLN LEU SER SEQRES 44 A 689 ARG ILE MET ASP ARG PHE ASN LEU PRO ARG ARG SER THR SEQRES 45 A 689 ASP PHE THR SER ARG ASP TYR TYR ILE ASN ILE ARG LYS SEQRES 46 A 689 ALA LEU VAL THR GLY TYR PHE MET GLN VAL ALA HIS LEU SEQRES 47 A 689 GLU ARG THR GLY HIS TYR LEU THR VAL LYS ASP ASN GLN SEQRES 48 A 689 VAL VAL GLN LEU HIS PRO SER THR VAL LEU ASP HIS LYS SEQRES 49 A 689 PRO GLU TRP VAL LEU TYR ASN GLU PHE VAL LEU THR THR SEQRES 50 A 689 LYS ASN TYR ILE ARG THR CYS THR ASP ILE LYS PRO GLU SEQRES 51 A 689 TRP LEU VAL LYS ILE ALA PRO GLN TYR TYR ASP MET SER SEQRES 52 A 689 ASN PHE PRO GLN CYS GLU ALA LYS ARG GLN LEU ASP ARG SEQRES 53 A 689 ILE ILE ALA LYS LEU GLN SER LYS GLU TYR SER GLN TYR SEQRES 1 B 67 GLY PRO HIS MET ALA GLU GLU ALA TYR LYS GLN GLN ILE SEQRES 2 B 67 LYS GLU ASP ASN ILE GLY ASN GLN LEU LEU ARG LYS MET SEQRES 3 B 67 GLY TRP THR GLY GLY GLY LEU GLY LYS SER GLY GLU GLY SEQRES 4 B 67 ILE ARG GLU PRO ILE SER VAL LYS GLU GLN HIS LYS ARG SEQRES 5 B 67 GLU GLY LEU GLY LEU ASP VAL GLU ARG VAL ASN LYS ILE SEQRES 6 B 67 ALA LYS HET ADP A 801 27 HET EDO A 802 4 HET MG A 803 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 EDO C2 H6 O2 FORMUL 5 MG MG 2+ FORMUL 6 HOH *299(H2 O) HELIX 1 1 PRO A 125 ARG A 134 1 10 HELIX 2 2 LYS A 143 LEU A 150 1 8 HELIX 3 3 LYS A 166 ARG A 179 1 14 HELIX 4 4 ARG A 195 GLU A 208 1 14 HELIX 5 5 ASP A 238 MET A 246 1 9 HELIX 6 6 LEU A 267 GLN A 282 1 16 HELIX 7 7 LYS A 299 TYR A 303 1 5 HELIX 8 8 TYR A 331 CYS A 345 1 15 HELIX 9 9 GLN A 359 ASP A 374 1 16 HELIX 10 10 PRO A 394 GLN A 397 1 4 HELIX 11 11 ILE A 423 THR A 426 1 4 HELIX 12 12 LYS A 463 GLY A 471 1 9 HELIX 13 13 GLU A 487 GLU A 493 1 7 HELIX 14 14 GLY A 508 LYS A 516 1 9 HELIX 15 15 PRO A 533 TYR A 545 1 13 HELIX 16 16 GLU A 557 ALA A 563 1 7 HELIX 17 17 PRO A 569 SER A 578 1 10 HELIX 18 18 SER A 584 LEU A 594 1 11 HELIX 19 19 LYS A 607 MET A 615 1 9 HELIX 20 20 ASP A 623 GLN A 636 1 14 HELIX 21 21 VAL A 641 ASP A 646 1 6 HELIX 22 22 TYR A 651 ARG A 670 1 20 HELIX 23 23 ASP A 684 TYR A 697 1 14 HELIX 24 24 PRO A 755 ILE A 761 1 7 HELIX 25 25 GLU A 775 GLN A 788 1 14 HELIX 26 26 ILE B 554 LYS B 561 1 8 SHEET 1 1 1 SER A 155 VAL A 159 0 SHEET 1 2 1 GLY A 187 GLN A 192 0 SHEET 1 3 1 VAL A 217 ILE A 221 0 SHEET 1 4 1 GLU A 224 CYS A 226 0 SHEET 1 5 1 LEU A 233 THR A 237 0 SHEET 1 6 1 TYR A 254 LEU A 259 0 SHEET 1 7 1 LYS A 287 SER A 292 0 SHEET 1 8 1 LEU A 309 THR A 311 0 SHEET 1 9 1 VAL A 319 TYR A 323 0 SHEET 1 10 1 ASP A 351 PHE A 355 0 SHEET 1 11 1 ILE A 383 LEU A 388 0 SHEET 1 12 1 ARG A 415 SER A 420 0 SHEET 1 13 1 VAL A 433 ASP A 438 0 SHEET 1 14 1 PHE A 441 ASN A 448 0 SHEET 1 15 1 VAL A 453 ALA A 460 0 SHEET 1 16 1 GLY A 479 ARG A 483 0 SHEET 1 17 1 VAL A 701 LEU A 704 0 SHEET 1 18 1 TYR A 710 THR A 712 0 SHEET 1 19 1 VAL A 718 LEU A 721 0 SHEET 1 20 1 TRP A 733 LEU A 741 0 SHEET 1 21 1 ASN A 745 ASP A 752 0 LINK OG1 THR A 167 MG MG A 803 1555 1555 2.00 LINK O2B ADP A 801 MG MG A 803 1555 1555 2.03 LINK MG MG A 803 O HOH A 944 1555 1555 2.02 LINK MG MG A 803 O HOH A 972 1555 1555 1.98 LINK MG MG A 803 O HOH A 995 1555 1555 2.07 LINK MG MG A 803 O HOH A1115 1555 1555 2.29 SITE 1 AC1 21 LEU A 137 GLU A 161 THR A 162 GLY A 163 SITE 2 AC1 21 SER A 164 GLY A 165 LYS A 166 THR A 167 SITE 3 AC1 21 THR A 168 ARG A 204 PHE A 401 THR A 429 SITE 4 AC1 21 ASP A 431 EDO A 802 MG A 803 HOH A 944 SITE 5 AC1 21 HOH A 946 HOH A 962 HOH A 995 HOH A1083 SITE 6 AC1 21 HOH A1110 SITE 1 AC2 4 VAL A 201 LEU A 428 ADP A 801 HOH A 985 SITE 1 AC3 6 THR A 167 ADP A 801 HOH A 944 HOH A 972 SITE 2 AC3 6 HOH A 995 HOH A1115 CRYST1 82.855 91.212 212.839 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012069 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004698 0.00000