HEADER HYDROLASE 08-AUG-19 6SHY TITLE STRUCTURE OF L320A/H321S DOUBLE MUTANT OF REX8A FROM PAENIBACILLUS TITLE 2 BARCINONENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDUCING-END XYLOSE-RELEASING EXO-OLIGOXYLANASE REX8A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REX; COMPND 5 EC: 3.2.1.156; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS BARCINONENSIS; SOURCE 3 ORGANISM_TAXID: 198119; SOURCE 4 GENE: REX8A, DFQ00_11062; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS XYLAN, EXO-OLIGOXYLANASE, XYLANASES, XYLOOLIGOSACCHARIDES, KEYWDS 2 XYLOOLIGOMERS, XYLOSE, HYDROLYSIS, POLYSACCHARIDES, GLYCAN, GLYCAN KEYWDS 3 DEGRADATION, XYLAN DEGRADATION, GLYCOSIDASE, HYDROLASE, CARBOHYDRATE KEYWDS 4 METABOLISM. EXPDTA X-RAY DIFFRACTION AUTHOR E.JIMENEZ-ORTEGA,M.RAMIREZ-ESCUDERO,J.SANZ-APARICIO REVDAT 3 24-JAN-24 6SHY 1 REMARK REVDAT 2 30-DEC-20 6SHY 1 JRNL REVDAT 1 27-MAY-20 6SHY 0 JRNL AUTH E.JIMENEZ-ORTEGA,S.VALENZUELA,M.RAMIREZ-ESCUDERO,F.J.PASTOR, JRNL AUTH 2 J.SANZ-APARICIO JRNL TITL STRUCTURAL ANALYSIS OF THE REDUCING-END XYLOSE-RELEASING JRNL TITL 2 EXO-OLIGOXYLANASE REX8A FROM PAENIBACILLUS BARCINONENSIS JRNL TITL 3 BP-23 DECIPHERS ITS MOLECULAR SPECIFICITY. JRNL REF FEBS J. V. 287 5362 2020 JRNL REFN ISSN 1742-464X JRNL PMID 32352213 JRNL DOI 10.1111/FEBS.15332 REMARK 2 REMARK 2 RESOLUTION. 1.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 71922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3752 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5238 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.2470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6212 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 487 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : 0.58000 REMARK 3 B12 (A**2) : 1.08000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : -0.65000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6501 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 5502 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8802 ; 1.503 ; 1.661 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12747 ; 1.560 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 758 ; 6.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 421 ;34.742 ;21.734 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 951 ;12.281 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;15.554 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7496 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1594 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 382 B 6 382 13659 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SHY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979250 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT, CRYOCOOLED REMARK 200 OPTICS : KB FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 7.0.039 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75674 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 45.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 7.0.039 REMARK 200 STARTING MODEL: 1WU4 REMARK 200 REMARK 200 REMARK: BAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 6000, 0.1 M TRIS PH 8.0, 0.2 M REMARK 280 NACL, 10% MPD, 0.01 M HEXAMMINE COBALT(III) CHLORIDE. REMARK 280 MICROSEEDING., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ILE B 3 REMARK 465 THR B 4 REMARK 465 GLY B 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 55 15.48 -151.72 REMARK 500 LYS A 84 78.62 -109.66 REMARK 500 ASP A 108 -11.53 76.53 REMARK 500 ASP B 55 14.52 -150.99 REMARK 500 ASP B 108 -11.85 77.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 408 DBREF1 6SHY A 1 380 UNP REX8A_PAEBA DBREF2 6SHY A A0A0S2UQQ5 1 380 DBREF1 6SHY B 1 380 UNP REX8A_PAEBA DBREF2 6SHY B A0A0S2UQQ5 1 380 SEQADV 6SHY ALA A 320 UNP A0A0S2UQQ LEU 320 ENGINEERED MUTATION SEQADV 6SHY SER A 321 UNP A0A0S2UQQ HIS 321 ENGINEERED MUTATION SEQADV 6SHY GLN A 381 UNP A0A0S2UQQ EXPRESSION TAG SEQADV 6SHY GLN A 382 UNP A0A0S2UQQ EXPRESSION TAG SEQADV 6SHY ALA B 320 UNP A0A0S2UQQ LEU 320 ENGINEERED MUTATION SEQADV 6SHY SER B 321 UNP A0A0S2UQQ HIS 321 ENGINEERED MUTATION SEQADV 6SHY GLN B 381 UNP A0A0S2UQQ EXPRESSION TAG SEQADV 6SHY GLN B 382 UNP A0A0S2UQQ EXPRESSION TAG SEQRES 1 A 382 MET ASN ILE THR GLY LYS GLY ALA TYR ASP THR GLY THR SEQRES 2 A 382 TYR ALA ASN LEU PHE GLN ARG SER GLY TYR ARG GLU ASP SEQRES 3 A 382 GLU ILE LYS ALA ARG LEU GLU GLN THR TRP ASN ASP LEU SEQRES 4 A 382 PHE TYR GLY ASP GLU HIS THR ARG ILE TYR TYR PRO VAL SEQRES 5 A 382 GLY ASP ASP LYS GLY TYR MET LEU ASP THR GLY ASN ASP SEQRES 6 A 382 ASP VAL ARG SER GLU GLY MET SER TYR GLY MET MET MET SEQRES 7 A 382 ALA VAL GLN MET ASP LYS LYS HIS GLU PHE ASP ARG LEU SEQRES 8 A 382 TRP ASN TYR ALA TYR THR TYR MET GLN HIS THR GLU GLY SEQRES 9 A 382 ARG TYR LYS ASP TYR PHE ALA TRP HIS CYS LYS PRO ASP SEQRES 10 A 382 GLY THR ARG LEU SER PRO GLY PRO ALA PRO ASP GLY GLU SEQRES 11 A 382 GLU PHE PHE ALA MET ALA LEU PHE PHE ALA SER ASN ARG SEQRES 12 A 382 TRP GLY ASP GLY PRO ALA PRO TYR ASP TYR GLN ALA GLN SEQRES 13 A 382 ALA ARG LYS ILE LEU HIS ALA CYS LEU HIS GLN GLY GLU SEQRES 14 A 382 GLN GLY GLU GLY ASP PRO MET TRP GLU PRO SER ASN ARG SEQRES 15 A 382 LEU ILE LYS PHE ILE PRO GLU LEU PRO PHE SER ASP PRO SEQRES 16 A 382 SER TYR HIS LEU PRO HIS PHE TYR GLU LEU PHE ALA GLN SEQRES 17 A 382 TYR ALA ASN GLU GLN ASP ARG THR PHE TRP LYS GLU ALA SEQRES 18 A 382 ALA GLU ALA SER ARG ALA TYR LEU ARG THR ALA CYS HIS SEQRES 19 A 382 PRO VAL THR GLY LEU SER PRO GLU TYR ALA ASN TYR ASP SEQRES 20 A 382 GLY THR PRO ALA PRO VAL GLN LEU HIS GLY ASP PHE ARG SEQRES 21 A 382 HIS PHE TYR SER ASP ALA TYR ARG VAL ALA ALA ASN VAL SEQRES 22 A 382 ALA LEU ASP TRP GLU TRP PHE ARG LYS ASP PRO TRP GLN SEQRES 23 A 382 VAL GLN GLN SER ASN ARG ILE GLN ALA PHE PHE SER ASP SEQRES 24 A 382 ILE ASP VAL SER ASP TYR ARG ARG TYR THR ILE GLU GLY SEQRES 25 A 382 GLU PRO PHE ASN GLU PRO ALA ALA SER PRO VAL GLY LEU SEQRES 26 A 382 LEU ALA THR ASN ALA MET ALA SER LEU ALA ALA ASP GLY SEQRES 27 A 382 PRO ASP ALA ASP SER PHE VAL LYS ARG PHE TRP ASN THR SEQRES 28 A 382 PRO LEU ARG GLN GLY LYS ARG ARG TYR TYR ASP ASN CYS SEQRES 29 A 382 LEU TYR PHE PHE THR MET LEU ALA LEU SER GLY ASN TYR SEQRES 30 A 382 ARG VAL TYR GLN GLN SEQRES 1 B 382 MET ASN ILE THR GLY LYS GLY ALA TYR ASP THR GLY THR SEQRES 2 B 382 TYR ALA ASN LEU PHE GLN ARG SER GLY TYR ARG GLU ASP SEQRES 3 B 382 GLU ILE LYS ALA ARG LEU GLU GLN THR TRP ASN ASP LEU SEQRES 4 B 382 PHE TYR GLY ASP GLU HIS THR ARG ILE TYR TYR PRO VAL SEQRES 5 B 382 GLY ASP ASP LYS GLY TYR MET LEU ASP THR GLY ASN ASP SEQRES 6 B 382 ASP VAL ARG SER GLU GLY MET SER TYR GLY MET MET MET SEQRES 7 B 382 ALA VAL GLN MET ASP LYS LYS HIS GLU PHE ASP ARG LEU SEQRES 8 B 382 TRP ASN TYR ALA TYR THR TYR MET GLN HIS THR GLU GLY SEQRES 9 B 382 ARG TYR LYS ASP TYR PHE ALA TRP HIS CYS LYS PRO ASP SEQRES 10 B 382 GLY THR ARG LEU SER PRO GLY PRO ALA PRO ASP GLY GLU SEQRES 11 B 382 GLU PHE PHE ALA MET ALA LEU PHE PHE ALA SER ASN ARG SEQRES 12 B 382 TRP GLY ASP GLY PRO ALA PRO TYR ASP TYR GLN ALA GLN SEQRES 13 B 382 ALA ARG LYS ILE LEU HIS ALA CYS LEU HIS GLN GLY GLU SEQRES 14 B 382 GLN GLY GLU GLY ASP PRO MET TRP GLU PRO SER ASN ARG SEQRES 15 B 382 LEU ILE LYS PHE ILE PRO GLU LEU PRO PHE SER ASP PRO SEQRES 16 B 382 SER TYR HIS LEU PRO HIS PHE TYR GLU LEU PHE ALA GLN SEQRES 17 B 382 TYR ALA ASN GLU GLN ASP ARG THR PHE TRP LYS GLU ALA SEQRES 18 B 382 ALA GLU ALA SER ARG ALA TYR LEU ARG THR ALA CYS HIS SEQRES 19 B 382 PRO VAL THR GLY LEU SER PRO GLU TYR ALA ASN TYR ASP SEQRES 20 B 382 GLY THR PRO ALA PRO VAL GLN LEU HIS GLY ASP PHE ARG SEQRES 21 B 382 HIS PHE TYR SER ASP ALA TYR ARG VAL ALA ALA ASN VAL SEQRES 22 B 382 ALA LEU ASP TRP GLU TRP PHE ARG LYS ASP PRO TRP GLN SEQRES 23 B 382 VAL GLN GLN SER ASN ARG ILE GLN ALA PHE PHE SER ASP SEQRES 24 B 382 ILE ASP VAL SER ASP TYR ARG ARG TYR THR ILE GLU GLY SEQRES 25 B 382 GLU PRO PHE ASN GLU PRO ALA ALA SER PRO VAL GLY LEU SEQRES 26 B 382 LEU ALA THR ASN ALA MET ALA SER LEU ALA ALA ASP GLY SEQRES 27 B 382 PRO ASP ALA ASP SER PHE VAL LYS ARG PHE TRP ASN THR SEQRES 28 B 382 PRO LEU ARG GLN GLY LYS ARG ARG TYR TYR ASP ASN CYS SEQRES 29 B 382 LEU TYR PHE PHE THR MET LEU ALA LEU SER GLY ASN TYR SEQRES 30 B 382 ARG VAL TYR GLN GLN HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET EDO A 409 4 HET EDO A 410 4 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET EDO B 407 4 HET EDO B 408 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 18(C2 H6 O2) FORMUL 21 HOH *487(H2 O) HELIX 1 AA1 GLY A 7 GLY A 12 1 6 HELIX 2 AA2 ASN A 16 GLY A 22 1 7 HELIX 3 AA3 ARG A 24 GLY A 42 1 19 HELIX 4 AA4 SER A 69 MET A 82 1 14 HELIX 5 AA5 LYS A 84 MET A 99 1 16 HELIX 6 AA6 ALA A 126 GLY A 145 1 20 HELIX 7 AA7 ASP A 152 GLY A 171 1 20 HELIX 8 AA8 ASP A 194 HIS A 198 5 5 HELIX 9 AA9 LEU A 199 ALA A 210 1 12 HELIX 10 AB1 ASN A 211 GLN A 213 5 3 HELIX 11 AB2 ASP A 214 CYS A 233 1 20 HELIX 12 AB3 TYR A 263 ALA A 266 5 4 HELIX 13 AB4 TYR A 267 ARG A 281 1 15 HELIX 14 AB5 PRO A 284 SER A 298 1 15 HELIX 15 AB6 ASP A 301 ASP A 304 5 4 HELIX 16 AB7 SER A 321 ALA A 332 1 12 HELIX 17 AB8 SER A 333 ALA A 335 5 3 HELIX 18 AB9 ASP A 340 ASN A 350 1 11 HELIX 19 AC1 ARG A 358 SER A 374 1 17 HELIX 20 AC2 GLY B 7 GLY B 12 1 6 HELIX 21 AC3 ASN B 16 SER B 21 1 6 HELIX 22 AC4 ARG B 24 GLY B 42 1 19 HELIX 23 AC5 SER B 69 MET B 82 1 14 HELIX 24 AC6 LYS B 84 MET B 99 1 16 HELIX 25 AC7 ALA B 126 GLY B 145 1 20 HELIX 26 AC8 ASP B 152 GLN B 167 1 16 HELIX 27 AC9 ASP B 194 HIS B 198 5 5 HELIX 28 AD1 LEU B 199 ALA B 210 1 12 HELIX 29 AD2 ASN B 211 GLN B 213 5 3 HELIX 30 AD3 ASP B 214 CYS B 233 1 20 HELIX 31 AD4 TYR B 263 ALA B 266 5 4 HELIX 32 AD5 TYR B 267 ARG B 281 1 15 HELIX 33 AD6 PRO B 284 SER B 298 1 15 HELIX 34 AD7 ASP B 301 ASP B 304 5 4 HELIX 35 AD8 SER B 321 ALA B 332 1 12 HELIX 36 AD9 SER B 333 ALA B 335 5 3 HELIX 37 AE1 ASP B 340 ASN B 350 1 11 HELIX 38 AE2 ARG B 358 SER B 374 1 17 SHEET 1 AA1 2 TYR A 49 VAL A 52 0 SHEET 2 AA1 2 LYS A 56 MET A 59 -1 O TYR A 58 N TYR A 50 SHEET 1 AA2 3 VAL A 67 ARG A 68 0 SHEET 2 AA2 3 HIS A 113 CYS A 114 -1 O CYS A 114 N VAL A 67 SHEET 3 AA2 3 ARG A 120 SER A 122 -1 O LEU A 121 N HIS A 113 SHEET 1 AA3 2 ARG A 306 TYR A 308 0 SHEET 2 AA3 2 PRO A 314 PRO A 318 -1 O PHE A 315 N ARG A 307 SHEET 1 AA4 2 TYR B 49 VAL B 52 0 SHEET 2 AA4 2 LYS B 56 MET B 59 -1 O TYR B 58 N TYR B 50 SHEET 1 AA5 3 VAL B 67 ARG B 68 0 SHEET 2 AA5 3 HIS B 113 CYS B 114 -1 O CYS B 114 N VAL B 67 SHEET 3 AA5 3 ARG B 120 SER B 122 -1 O LEU B 121 N HIS B 113 SHEET 1 AA6 2 ARG B 306 TYR B 308 0 SHEET 2 AA6 2 PRO B 314 PRO B 318 -1 O PHE B 315 N ARG B 307 CISPEP 1 ALA A 149 PRO A 150 0 2.86 CISPEP 2 ALA B 149 PRO B 150 0 3.02 SITE 1 AC1 5 PHE A 132 HIS A 201 ASN A 272 TYR A 377 SITE 2 AC1 5 EDO A 402 SITE 1 AC2 4 PHE A 132 ALA A 271 EDO A 401 HOH A 550 SITE 1 AC3 4 HIS A 101 THR A 102 GLU A 103 ARG A 120 SITE 1 AC4 4 SER A 298 ASP A 340 GLU B 313 HOH B 611 SITE 1 AC5 6 LYS A 85 HIS A 86 HOH A 556 HOH A 558 SITE 2 AC5 6 ASP B 89 TYR B 151 SITE 1 AC6 8 ARG A 68 TRP A 112 ALA A 126 ASP A 128 SITE 2 AC6 8 TYR A 197 HOH A 501 HOH A 543 HOH A 662 SITE 1 AC7 2 PRO A 235 HOH A 656 SITE 1 AC8 3 ARG A 68 TYR A 243 HOH A 544 SITE 1 AC9 2 SER A 264 SER A 321 SITE 1 AD1 5 GLU A 242 ASP A 258 PHE A 259 TYR A 263 SITE 2 AD1 5 ARG A 307 SITE 1 AD2 5 PHE B 132 HIS B 201 ASN B 272 TYR B 377 SITE 2 AD2 5 EDO B 402 SITE 1 AD3 5 PHE B 132 PHE B 368 EDO B 401 HOH B 533 SITE 2 AD3 5 HOH B 558 SITE 1 AD4 4 HIS B 101 THR B 102 GLU B 103 ARG B 120 SITE 1 AD5 6 GLY A 312 GLU A 313 ALA B 295 SER B 298 SITE 2 AD5 6 ASP B 340 HOH B 556 SITE 1 AD6 6 ASP A 89 TYR A 151 LYS B 85 HIS B 86 SITE 2 AD6 6 HOH B 537 HOH B 586 SITE 1 AD7 1 EDO B 407 SITE 1 AD8 4 GLN A 288 PRO B 235 EDO B 406 HOH B 505 SITE 1 AD9 3 THR B 231 PRO B 250 HOH B 534 CRYST1 51.302 58.580 78.677 87.51 78.08 74.32 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019492 -0.005473 -0.004187 0.00000 SCALE2 0.000000 0.017731 0.000233 0.00000 SCALE3 0.000000 0.000000 0.012991 0.00000