HEADER LYASE 10-AUG-19 6SIR TITLE CRYSTAL STRUCTURE OF THE GUANYLATE CYCLASE DOMAIN OF RHGC FROM TITLE 2 CATENARIA ANGUILLULAE IN COMPLEX WITH GTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOTIDE CYCLASE; COMPND 3 CHAIN: A, B, D, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CATENARIA ANGUILLULAE PL171; SOURCE 3 ORGANISM_TAXID: 765915; SOURCE 4 GENE: BCR44DRAFT_1480233; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GUANYLATE CYCLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BUTRYN,A.M.ORVILLE REVDAT 3 24-JAN-24 6SIR 1 LINK REVDAT 2 15-JUL-20 6SIR 1 JRNL REVDAT 1 18-DEC-19 6SIR 0 JRNL AUTH A.BUTRYN,H.RAZA,H.RADA,I.MORAES,R.J.OWENS,A.M.ORVILLE JRNL TITL MOLECULAR BASIS FOR GTP RECOGNITION BY LIGHT-ACTIVATED JRNL TITL 2 GUANYLATE CYCLASE RHGC. JRNL REF FEBS J. V. 287 2797 2020 JRNL REFN ISSN 1742-464X JRNL PMID 31808997 JRNL DOI 10.1111/FEBS.15167 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 85085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 4316 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.9500 - 5.2800 1.00 2946 162 0.1805 0.1835 REMARK 3 2 5.2800 - 4.1900 1.00 2783 167 0.1449 0.1704 REMARK 3 3 4.1900 - 3.6600 1.00 2787 150 0.1520 0.1673 REMARK 3 4 3.6600 - 3.3300 1.00 2780 141 0.1586 0.1993 REMARK 3 5 3.3300 - 3.0900 1.00 2726 155 0.1778 0.2022 REMARK 3 6 3.0900 - 2.9100 1.00 2733 154 0.1826 0.1901 REMARK 3 7 2.9100 - 2.7600 0.99 2726 143 0.1854 0.2216 REMARK 3 8 2.7600 - 2.6400 1.00 2717 138 0.1834 0.2348 REMARK 3 9 2.6400 - 2.5400 0.99 2709 128 0.1861 0.2120 REMARK 3 10 2.5400 - 2.4500 0.99 2720 134 0.1902 0.2055 REMARK 3 11 2.4500 - 2.3800 0.99 2695 150 0.1889 0.2328 REMARK 3 12 2.3800 - 2.3100 0.99 2664 163 0.1859 0.2277 REMARK 3 13 2.3100 - 2.2500 0.99 2667 158 0.1876 0.2188 REMARK 3 14 2.2500 - 2.1900 0.99 2668 154 0.1913 0.2218 REMARK 3 15 2.1900 - 2.1400 0.99 2677 153 0.1930 0.2260 REMARK 3 16 2.1400 - 2.1000 0.99 2655 126 0.1948 0.2444 REMARK 3 17 2.1000 - 2.0500 0.99 2698 143 0.2002 0.2237 REMARK 3 18 2.0500 - 2.0200 0.99 2662 138 0.2012 0.2369 REMARK 3 19 2.0200 - 1.9800 0.99 2638 144 0.2022 0.2086 REMARK 3 20 1.9800 - 1.9500 0.99 2682 142 0.2001 0.2573 REMARK 3 21 1.9500 - 1.9100 0.98 2649 133 0.2065 0.2387 REMARK 3 22 1.9100 - 1.8900 0.98 2653 153 0.2067 0.2501 REMARK 3 23 1.8900 - 1.8600 0.98 2663 122 0.2145 0.2644 REMARK 3 24 1.8600 - 1.8300 0.98 2655 112 0.2189 0.3161 REMARK 3 25 1.8300 - 1.8100 0.98 2676 136 0.2319 0.2952 REMARK 3 26 1.8100 - 1.7800 0.98 2589 167 0.2480 0.3006 REMARK 3 27 1.7800 - 1.7600 0.98 2655 135 0.2578 0.2991 REMARK 3 28 1.7600 - 1.7400 0.98 2645 129 0.2535 0.2776 REMARK 3 29 1.7400 - 1.7200 0.98 2604 147 0.2744 0.3117 REMARK 3 30 1.7200 - 1.7000 0.98 2647 139 0.2916 0.3143 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.217 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 6094 REMARK 3 ANGLE : 0.816 8322 REMARK 3 CHIRALITY : 0.054 955 REMARK 3 PLANARITY : 0.004 1087 REMARK 3 DIHEDRAL : 9.483 3636 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103812. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9686 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.10 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85155 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.50 REMARK 200 R MERGE FOR SHELL (I) : 1.27000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: 2W01 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIB PH 4.4, 22% PEG 2000, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.32500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.33000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.33000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.32500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 440 REMARK 465 PRO A 441 REMARK 465 ALA A 442 REMARK 465 THR A 443 REMARK 465 GLU A 444 REMARK 465 GLY B 440 REMARK 465 PRO B 441 REMARK 465 ALA B 442 REMARK 465 THR B 443 REMARK 465 GLU B 444 REMARK 465 GLY D 440 REMARK 465 PRO D 441 REMARK 465 ALA D 442 REMARK 465 THR D 443 REMARK 465 GLU D 444 REMARK 465 GLY C 440 REMARK 465 PRO C 441 REMARK 465 ALA C 442 REMARK 465 THR C 443 REMARK 465 GLU C 444 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL C 611 CB CG1 CG2 REMARK 470 LYS C 612 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 515 42.94 -91.12 REMARK 500 ASP A 560 -64.23 -130.54 REMARK 500 ASP A 560 -66.78 -129.14 REMARK 500 ASP B 515 41.36 -97.06 REMARK 500 ASP B 560 -64.93 -133.14 REMARK 500 ASP D 515 42.66 -97.38 REMARK 500 ASP D 560 -66.28 -125.76 REMARK 500 ASP C 515 43.74 -92.06 REMARK 500 THR C 536 -178.52 -68.27 REMARK 500 ASP C 560 -64.91 -136.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 457 OD2 REMARK 620 2 ILE A 458 O 92.2 REMARK 620 3 ASP A 501 OD2 96.2 82.6 REMARK 620 4 GTP A 703 O1A 99.2 168.6 96.8 REMARK 620 5 GTP A 703 O2B 157.6 88.7 106.1 80.5 REMARK 620 6 GTP A 703 O2G 81.1 93.0 174.8 88.0 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 457 OD2 REMARK 620 2 ILE B 458 O 87.6 REMARK 620 3 ASP B 501 OD2 92.0 76.9 REMARK 620 4 GTP B 702 O2G 87.2 95.6 172.4 REMARK 620 5 GTP B 702 O2B 163.4 90.6 103.7 76.5 REMARK 620 6 GTP B 702 O1A 105.7 165.6 96.8 90.7 78.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 457 OD2 REMARK 620 2 ILE D 458 O 90.9 REMARK 620 3 ASP D 501 OD2 95.6 80.4 REMARK 620 4 GTP D 702 O2G 83.9 93.6 174.0 REMARK 620 5 GTP D 702 O2B 157.7 89.9 106.5 73.8 REMARK 620 6 GTP D 702 O1A 101.5 167.6 97.4 88.5 78.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 457 OD2 REMARK 620 2 ILE C 458 O 83.2 REMARK 620 3 ASP C 501 OD2 94.5 81.0 REMARK 620 4 GTP C 702 O1A 104.5 171.2 102.5 REMARK 620 5 GTP C 702 O2G 77.9 86.9 166.4 90.4 REMARK 620 6 GTP C 702 O2B 148.0 87.4 114.2 83.8 71.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP D 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GTP C 702 DBREF1 6SIR A 442 626 UNP A0A1Y2HEJ3_9FUNG DBREF2 6SIR A A0A1Y2HEJ3 77 261 DBREF1 6SIR B 442 626 UNP A0A1Y2HEJ3_9FUNG DBREF2 6SIR B A0A1Y2HEJ3 77 261 DBREF1 6SIR D 442 626 UNP A0A1Y2HEJ3_9FUNG DBREF2 6SIR D A0A1Y2HEJ3 77 261 DBREF1 6SIR C 442 626 UNP A0A1Y2HEJ3_9FUNG DBREF2 6SIR C A0A1Y2HEJ3 77 261 SEQADV 6SIR GLY A 440 UNP A0A1Y2HEJ EXPRESSION TAG SEQADV 6SIR PRO A 441 UNP A0A1Y2HEJ EXPRESSION TAG SEQADV 6SIR GLY B 440 UNP A0A1Y2HEJ EXPRESSION TAG SEQADV 6SIR PRO B 441 UNP A0A1Y2HEJ EXPRESSION TAG SEQADV 6SIR GLY D 440 UNP A0A1Y2HEJ EXPRESSION TAG SEQADV 6SIR PRO D 441 UNP A0A1Y2HEJ EXPRESSION TAG SEQADV 6SIR GLY C 440 UNP A0A1Y2HEJ EXPRESSION TAG SEQADV 6SIR PRO C 441 UNP A0A1Y2HEJ EXPRESSION TAG SEQRES 1 A 187 GLY PRO ALA THR GLU ALA LYS GLU TYR GLU SER VAL THR SEQRES 2 A 187 VAL PHE PHE SER ASP ILE THR ASN PHE THR VAL ILE SER SEQRES 3 A 187 SER ARG THR SER THR LYS ASP MET MET ALA THR LEU ASN SEQRES 4 A 187 LYS LEU TRP LEU GLU TYR ASP ALA ILE ALA LYS ARG TRP SEQRES 5 A 187 GLY VAL TYR LYS VAL GLU THR ILE GLY ASP ALA TYR LEU SEQRES 6 A 187 GLY VAL THR GLY ALA PRO GLU VAL VAL PRO ASP HIS ALA SEQRES 7 A 187 ASP ARG ALA VAL ASN PHE ALA LEU ASP ILE ILE GLU MET SEQRES 8 A 187 ILE LYS THR PHE LYS THR ALA THR GLY GLU SER ILE ASN SEQRES 9 A 187 ILE ARG ILE GLY LEU ASN SER GLY PRO VAL THR ALA GLY SEQRES 10 A 187 VAL LEU GLY ASP LEU ASN PRO HIS TRP CYS LEU VAL GLY SEQRES 11 A 187 ASP THR VAL ASN THR ALA SER ARG MET GLU SER THR SER SEQRES 12 A 187 LYS ALA GLY HIS ILE HIS ILE SER ASP SER THR TYR GLN SEQRES 13 A 187 MET ILE LYS GLY LYS PHE VAL THR GLN PRO LEU ASP LEU SEQRES 14 A 187 MET GLU VAL LYS GLY LYS GLY LYS MET GLN THR TYR TRP SEQRES 15 A 187 VAL THR ALA ARG LYS SEQRES 1 B 187 GLY PRO ALA THR GLU ALA LYS GLU TYR GLU SER VAL THR SEQRES 2 B 187 VAL PHE PHE SER ASP ILE THR ASN PHE THR VAL ILE SER SEQRES 3 B 187 SER ARG THR SER THR LYS ASP MET MET ALA THR LEU ASN SEQRES 4 B 187 LYS LEU TRP LEU GLU TYR ASP ALA ILE ALA LYS ARG TRP SEQRES 5 B 187 GLY VAL TYR LYS VAL GLU THR ILE GLY ASP ALA TYR LEU SEQRES 6 B 187 GLY VAL THR GLY ALA PRO GLU VAL VAL PRO ASP HIS ALA SEQRES 7 B 187 ASP ARG ALA VAL ASN PHE ALA LEU ASP ILE ILE GLU MET SEQRES 8 B 187 ILE LYS THR PHE LYS THR ALA THR GLY GLU SER ILE ASN SEQRES 9 B 187 ILE ARG ILE GLY LEU ASN SER GLY PRO VAL THR ALA GLY SEQRES 10 B 187 VAL LEU GLY ASP LEU ASN PRO HIS TRP CYS LEU VAL GLY SEQRES 11 B 187 ASP THR VAL ASN THR ALA SER ARG MET GLU SER THR SER SEQRES 12 B 187 LYS ALA GLY HIS ILE HIS ILE SER ASP SER THR TYR GLN SEQRES 13 B 187 MET ILE LYS GLY LYS PHE VAL THR GLN PRO LEU ASP LEU SEQRES 14 B 187 MET GLU VAL LYS GLY LYS GLY LYS MET GLN THR TYR TRP SEQRES 15 B 187 VAL THR ALA ARG LYS SEQRES 1 D 187 GLY PRO ALA THR GLU ALA LYS GLU TYR GLU SER VAL THR SEQRES 2 D 187 VAL PHE PHE SER ASP ILE THR ASN PHE THR VAL ILE SER SEQRES 3 D 187 SER ARG THR SER THR LYS ASP MET MET ALA THR LEU ASN SEQRES 4 D 187 LYS LEU TRP LEU GLU TYR ASP ALA ILE ALA LYS ARG TRP SEQRES 5 D 187 GLY VAL TYR LYS VAL GLU THR ILE GLY ASP ALA TYR LEU SEQRES 6 D 187 GLY VAL THR GLY ALA PRO GLU VAL VAL PRO ASP HIS ALA SEQRES 7 D 187 ASP ARG ALA VAL ASN PHE ALA LEU ASP ILE ILE GLU MET SEQRES 8 D 187 ILE LYS THR PHE LYS THR ALA THR GLY GLU SER ILE ASN SEQRES 9 D 187 ILE ARG ILE GLY LEU ASN SER GLY PRO VAL THR ALA GLY SEQRES 10 D 187 VAL LEU GLY ASP LEU ASN PRO HIS TRP CYS LEU VAL GLY SEQRES 11 D 187 ASP THR VAL ASN THR ALA SER ARG MET GLU SER THR SER SEQRES 12 D 187 LYS ALA GLY HIS ILE HIS ILE SER ASP SER THR TYR GLN SEQRES 13 D 187 MET ILE LYS GLY LYS PHE VAL THR GLN PRO LEU ASP LEU SEQRES 14 D 187 MET GLU VAL LYS GLY LYS GLY LYS MET GLN THR TYR TRP SEQRES 15 D 187 VAL THR ALA ARG LYS SEQRES 1 C 187 GLY PRO ALA THR GLU ALA LYS GLU TYR GLU SER VAL THR SEQRES 2 C 187 VAL PHE PHE SER ASP ILE THR ASN PHE THR VAL ILE SER SEQRES 3 C 187 SER ARG THR SER THR LYS ASP MET MET ALA THR LEU ASN SEQRES 4 C 187 LYS LEU TRP LEU GLU TYR ASP ALA ILE ALA LYS ARG TRP SEQRES 5 C 187 GLY VAL TYR LYS VAL GLU THR ILE GLY ASP ALA TYR LEU SEQRES 6 C 187 GLY VAL THR GLY ALA PRO GLU VAL VAL PRO ASP HIS ALA SEQRES 7 C 187 ASP ARG ALA VAL ASN PHE ALA LEU ASP ILE ILE GLU MET SEQRES 8 C 187 ILE LYS THR PHE LYS THR ALA THR GLY GLU SER ILE ASN SEQRES 9 C 187 ILE ARG ILE GLY LEU ASN SER GLY PRO VAL THR ALA GLY SEQRES 10 C 187 VAL LEU GLY ASP LEU ASN PRO HIS TRP CYS LEU VAL GLY SEQRES 11 C 187 ASP THR VAL ASN THR ALA SER ARG MET GLU SER THR SER SEQRES 12 C 187 LYS ALA GLY HIS ILE HIS ILE SER ASP SER THR TYR GLN SEQRES 13 C 187 MET ILE LYS GLY LYS PHE VAL THR GLN PRO LEU ASP LEU SEQRES 14 C 187 MET GLU VAL LYS GLY LYS GLY LYS MET GLN THR TYR TRP SEQRES 15 C 187 VAL THR ALA ARG LYS HET CA A 701 1 HET GOL A 702 6 HET GTP A 703 32 HET CA B 701 1 HET GTP B 702 32 HET CA D 701 1 HET GTP D 702 32 HET GOL D 703 6 HET CA C 701 1 HET GTP C 702 32 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CA 4(CA 2+) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 7 GTP 4(C10 H16 N5 O14 P3) FORMUL 15 HOH *577(H2 O) HELIX 1 AA1 ASN A 460 ARG A 467 1 8 HELIX 2 AA2 SER A 469 GLY A 492 1 24 HELIX 3 AA3 ASP A 515 PHE A 534 1 20 HELIX 4 AA4 GLY A 569 THR A 581 1 13 HELIX 5 AA5 SER A 590 LYS A 598 1 9 HELIX 6 AA6 ASN B 460 THR B 468 1 9 HELIX 7 AA7 SER B 469 GLY B 492 1 24 HELIX 8 AA8 ASP B 515 PHE B 534 1 20 HELIX 9 AA9 GLY B 569 THR B 581 1 13 HELIX 10 AB1 ASP B 591 LYS B 598 1 8 HELIX 11 AB2 ASN D 460 THR D 468 1 9 HELIX 12 AB3 SER D 469 GLY D 492 1 24 HELIX 13 AB4 ASP D 515 PHE D 534 1 20 HELIX 14 AB5 GLY D 569 THR D 581 1 13 HELIX 15 AB6 SER D 590 LYS D 598 1 9 HELIX 16 AB7 ASN C 460 ARG C 467 1 8 HELIX 17 AB8 SER C 469 GLY C 492 1 24 HELIX 18 AB9 ASP C 515 PHE C 534 1 20 HELIX 19 AC1 GLY C 569 THR C 581 1 13 HELIX 20 AC2 SER C 590 LYS C 598 1 9 SHEET 1 AA1 5 TYR A 494 ILE A 499 0 SHEET 2 AA1 5 ALA A 502 THR A 507 -1 O VAL A 506 N TYR A 494 SHEET 3 AA1 5 LYS A 446 ILE A 458 -1 N PHE A 454 O GLY A 505 SHEET 4 AA1 5 ILE A 544 LEU A 558 -1 O ALA A 555 N LYS A 446 SHEET 5 AA1 5 HIS A 564 VAL A 568 -1 O CYS A 566 N GLY A 556 SHEET 1 AA2 7 TYR A 494 ILE A 499 0 SHEET 2 AA2 7 ALA A 502 THR A 507 -1 O VAL A 506 N TYR A 494 SHEET 3 AA2 7 LYS A 446 ILE A 458 -1 N PHE A 454 O GLY A 505 SHEET 4 AA2 7 ILE A 544 LEU A 558 -1 O ALA A 555 N LYS A 446 SHEET 5 AA2 7 ILE A 587 ILE A 589 1 O HIS A 588 N ILE A 546 SHEET 6 AA2 7 TYR A 620 ARG A 625 -1 O TYR A 620 N ILE A 589 SHEET 7 AA2 7 PHE A 601 PRO A 605 -1 N VAL A 602 O ALA A 624 SHEET 1 AA3 2 MET A 609 VAL A 611 0 SHEET 2 AA3 2 GLY A 615 MET A 617 -1 O GLY A 615 N VAL A 611 SHEET 1 AA4 5 TYR B 494 ILE B 499 0 SHEET 2 AA4 5 ALA B 502 THR B 507 -1 O VAL B 506 N TYR B 494 SHEET 3 AA4 5 LYS B 446 ILE B 458 -1 N PHE B 454 O GLY B 505 SHEET 4 AA4 5 ILE B 544 LEU B 558 -1 O ASN B 549 N VAL B 453 SHEET 5 AA4 5 HIS B 564 VAL B 568 -1 O CYS B 566 N GLY B 556 SHEET 1 AA5 7 TYR B 494 ILE B 499 0 SHEET 2 AA5 7 ALA B 502 THR B 507 -1 O VAL B 506 N TYR B 494 SHEET 3 AA5 7 LYS B 446 ILE B 458 -1 N PHE B 454 O GLY B 505 SHEET 4 AA5 7 ILE B 544 LEU B 558 -1 O ASN B 549 N VAL B 453 SHEET 5 AA5 7 ILE B 587 SER B 590 1 O HIS B 588 N ILE B 546 SHEET 6 AA5 7 THR B 619 ARG B 625 -1 O TYR B 620 N ILE B 589 SHEET 7 AA5 7 PHE B 601 PRO B 605 -1 N GLN B 604 O TRP B 621 SHEET 1 AA6 2 MET B 609 VAL B 611 0 SHEET 2 AA6 2 GLY B 615 MET B 617 -1 O MET B 617 N MET B 609 SHEET 1 AA7 5 TYR D 494 ILE D 499 0 SHEET 2 AA7 5 ALA D 502 THR D 507 -1 O VAL D 506 N TYR D 494 SHEET 3 AA7 5 LYS D 446 ILE D 458 -1 N PHE D 454 O GLY D 505 SHEET 4 AA7 5 ILE D 544 LEU D 558 -1 O VAL D 553 N TYR D 448 SHEET 5 AA7 5 HIS D 564 VAL D 568 -1 O CYS D 566 N GLY D 556 SHEET 1 AA8 7 TYR D 494 ILE D 499 0 SHEET 2 AA8 7 ALA D 502 THR D 507 -1 O VAL D 506 N TYR D 494 SHEET 3 AA8 7 LYS D 446 ILE D 458 -1 N PHE D 454 O GLY D 505 SHEET 4 AA8 7 ILE D 544 LEU D 558 -1 O VAL D 553 N TYR D 448 SHEET 5 AA8 7 ILE D 587 ILE D 589 1 O HIS D 588 N ILE D 546 SHEET 6 AA8 7 TYR D 620 ARG D 625 -1 O TYR D 620 N ILE D 589 SHEET 7 AA8 7 PHE D 601 PRO D 605 -1 N VAL D 602 O ALA D 624 SHEET 1 AA9 2 MET D 609 VAL D 611 0 SHEET 2 AA9 2 GLY D 615 MET D 617 -1 O GLY D 615 N VAL D 611 SHEET 1 AB1 5 TYR C 494 ILE C 499 0 SHEET 2 AB1 5 ALA C 502 THR C 507 -1 O VAL C 506 N TYR C 494 SHEET 3 AB1 5 LYS C 446 ILE C 458 -1 N PHE C 454 O GLY C 505 SHEET 4 AB1 5 ILE C 544 LEU C 558 -1 O ALA C 555 N LYS C 446 SHEET 5 AB1 5 HIS C 564 VAL C 568 -1 O CYS C 566 N GLY C 556 SHEET 1 AB2 7 TYR C 494 ILE C 499 0 SHEET 2 AB2 7 ALA C 502 THR C 507 -1 O VAL C 506 N TYR C 494 SHEET 3 AB2 7 LYS C 446 ILE C 458 -1 N PHE C 454 O GLY C 505 SHEET 4 AB2 7 ILE C 544 LEU C 558 -1 O ALA C 555 N LYS C 446 SHEET 5 AB2 7 ILE C 587 ILE C 589 1 O HIS C 588 N ILE C 546 SHEET 6 AB2 7 TYR C 620 ARG C 625 -1 O TYR C 620 N ILE C 589 SHEET 7 AB2 7 PHE C 601 PRO C 605 -1 N VAL C 602 O ALA C 624 SHEET 1 AB3 2 MET C 609 GLU C 610 0 SHEET 2 AB3 2 LYS C 616 MET C 617 -1 O MET C 617 N MET C 609 LINK OD2 ASP A 457 CA CA A 701 1555 1555 2.21 LINK O ILE A 458 CA CA A 701 1555 1555 2.27 LINK OD2 ASP A 501 CA CA A 701 1555 1555 2.34 LINK CA CA A 701 O1A GTP A 703 1555 1555 2.28 LINK CA CA A 701 O2B GTP A 703 1555 1555 2.26 LINK CA CA A 701 O2G GTP A 703 1555 1555 2.35 LINK OD2 ASP B 457 CA CA B 701 1555 1555 2.17 LINK O ILE B 458 CA CA B 701 1555 1555 2.32 LINK OD2 ASP B 501 CA CA B 701 1555 1555 2.39 LINK CA CA B 701 O2G GTP B 702 1555 1555 2.33 LINK CA CA B 701 O2B GTP B 702 1555 1555 2.33 LINK CA CA B 701 O1A GTP B 702 1555 1555 2.33 LINK OD2 ASP D 457 CA CA D 701 1555 1555 2.15 LINK O ILE D 458 CA CA D 701 1555 1555 2.42 LINK OD2 ASP D 501 CA CA D 701 1555 1555 2.32 LINK CA CA D 701 O2G GTP D 702 1555 1555 2.37 LINK CA CA D 701 O2B GTP D 702 1555 1555 2.24 LINK CA CA D 701 O1A GTP D 702 1555 1555 2.40 LINK OD2 ASP C 457 CA CA C 701 1555 1555 2.25 LINK O ILE C 458 CA CA C 701 1555 1555 2.43 LINK OD2 ASP C 501 CA CA C 701 1555 1555 2.41 LINK CA CA C 701 O1A GTP C 702 1555 1555 2.30 LINK CA CA C 701 O2G GTP C 702 1555 1555 2.53 LINK CA CA C 701 O2B GTP C 702 1555 1555 2.24 CISPEP 1 ALA A 509 PRO A 510 0 -4.61 CISPEP 2 ALA B 509 PRO B 510 0 -4.64 CISPEP 3 ALA D 509 PRO D 510 0 -2.77 CISPEP 4 ALA C 509 PRO C 510 0 0.32 SITE 1 AC1 4 ASP A 457 ILE A 458 ASP A 501 GTP A 703 SITE 1 AC2 10 GLU A 447 PRO A 552 VAL A 553 THR A 554 SITE 2 AC2 10 HOH A 866 HOH A 873 THR B 470 GLN C 595 SITE 3 AC2 10 MET C 596 HOH C 855 SITE 1 AC3 27 ASP A 457 ILE A 458 THR A 459 ASN A 460 SITE 2 AC3 27 PHE A 461 THR A 462 ILE A 499 GLY A 500 SITE 3 AC3 27 ASP A 501 ARG A 545 CA A 701 HOH A 805 SITE 4 AC3 27 HOH A 806 HOH A 815 HOH A 830 HOH A 871 SITE 5 AC3 27 HOH A 876 HOH A 913 PHE B 455 GLU B 497 SITE 6 AC3 27 LEU B 504 LEU B 567 VAL B 572 ASN B 573 SITE 7 AC3 27 SER B 576 ARG B 577 LYS B 612 SITE 1 AC4 4 ASP B 457 ILE B 458 ASP B 501 GTP B 702 SITE 1 AC5 25 PHE A 455 GLU A 497 ILE A 499 LEU A 567 SITE 2 AC5 25 ASN A 573 SER A 576 ARG A 577 LYS A 612 SITE 3 AC5 25 ASP B 457 ILE B 458 THR B 459 ASN B 460 SITE 4 AC5 25 PHE B 461 THR B 462 ILE B 499 GLY B 500 SITE 5 AC5 25 ASP B 501 ARG B 545 CA B 701 HOH B 803 SITE 6 AC5 25 HOH B 836 HOH B 838 HOH B 866 HOH B 872 SITE 7 AC5 25 HOH B 913 SITE 1 AC6 4 ASP D 457 ILE D 458 ASP D 501 GTP D 702 SITE 1 AC7 24 PHE C 455 GLU C 497 ILE C 499 LEU C 567 SITE 2 AC7 24 ASN C 573 SER C 576 ARG C 577 HOH C 897 SITE 3 AC7 24 ASP D 457 ILE D 458 THR D 459 ASN D 460 SITE 4 AC7 24 PHE D 461 THR D 462 ILE D 499 GLY D 500 SITE 5 AC7 24 ASP D 501 ARG D 545 CA D 701 HOH D 801 SITE 6 AC7 24 HOH D 806 HOH D 831 HOH D 861 HOH D 882 SITE 1 AC8 10 GLN A 595 MET A 596 HOH A 889 GLU C 447 SITE 2 AC8 10 VAL C 553 THR C 554 HOH C 803 HOH C 852 SITE 3 AC8 10 THR D 470 HOH D 870 SITE 1 AC9 4 ASP C 457 ILE C 458 ASP C 501 GTP C 702 SITE 1 AD1 24 ASP C 457 ILE C 458 ASN C 460 PHE C 461 SITE 2 AD1 24 THR C 462 ILE C 499 GLY C 500 ASP C 501 SITE 3 AD1 24 ARG C 545 CA C 701 HOH C 817 HOH C 819 SITE 4 AD1 24 HOH C 839 HOH C 866 HOH C 879 PHE D 455 SITE 5 AD1 24 GLU D 497 LEU D 504 LEU D 567 VAL D 572 SITE 6 AD1 24 ASN D 573 SER D 576 ARG D 577 LYS D 612 CRYST1 58.650 95.170 138.660 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017050 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010508 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007212 0.00000