HEADER LIPID TRANSPORT 19-AUG-19 6SLD TITLE STRUCTURE OF THE PHOSPHATIDYLCHOLINE BINDING MUTANT OF YEAST SEC14 TITLE 2 HOMOLOG SFH1 (S175I,T177I) IN COMPLEX WITH PHOSPHATIDYLINOSITOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: YKL091C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE)-RIL KEYWDS SEC14, SFH1, PHOSPHATIDYLCHOLINE, PHOSPHATIDYLINOSITOL, LIPID KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.BERGER,M.FITZ,P.JOHNEN,S.SHANMUGARATNAM,B.HOCKER,A.C.STIEL,G.SCHAAF REVDAT 1 19-AUG-20 6SLD 0 JRNL AUTH J.BERGER,M.FITZ,P.JOHNEN,S.SHANMUGARATNAM,B.HOCKER, JRNL AUTH 2 A.C.STIEL,G.SCHAAF JRNL TITL STRUCTURE OF THE PHOSPHATIDYLCHOLINE BINDING MUTANT OF YEAST JRNL TITL 2 SEC14 HOMOLOG SFH1 (S175I,T177I) IN COMPLEX WITH JRNL TITL 3 PHOSPHATIDYLINOSITOL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 61865 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0950 - 3.9110 1.00 2893 153 0.1572 0.1609 REMARK 3 2 3.9110 - 3.1045 1.00 2757 145 0.1279 0.1233 REMARK 3 3 3.1045 - 2.7121 1.00 2725 143 0.1380 0.1510 REMARK 3 4 2.7121 - 2.4642 1.00 2720 143 0.1296 0.1645 REMARK 3 5 2.4642 - 2.2876 1.00 2693 142 0.1245 0.1531 REMARK 3 6 2.2876 - 2.1527 1.00 2688 142 0.1244 0.1552 REMARK 3 7 2.1527 - 2.0449 1.00 2676 140 0.1214 0.1665 REMARK 3 8 2.0449 - 1.9559 1.00 2680 142 0.1237 0.1481 REMARK 3 9 1.9559 - 1.8806 1.00 2658 139 0.1255 0.1451 REMARK 3 10 1.8806 - 1.8157 1.00 2667 141 0.1375 0.1711 REMARK 3 11 1.8157 - 1.7589 1.00 2655 139 0.1388 0.1665 REMARK 3 12 1.7589 - 1.7086 1.00 2668 141 0.1443 0.1787 REMARK 3 13 1.7086 - 1.6637 1.00 2636 139 0.1493 0.1636 REMARK 3 14 1.6637 - 1.6231 1.00 2688 141 0.1560 0.1884 REMARK 3 15 1.6231 - 1.5862 1.00 2661 140 0.1564 0.2077 REMARK 3 16 1.5862 - 1.5524 1.00 2623 138 0.1695 0.2055 REMARK 3 17 1.5524 - 1.5214 1.00 2674 141 0.1768 0.2227 REMARK 3 18 1.5214 - 1.4926 1.00 2639 139 0.1866 0.2189 REMARK 3 19 1.4926 - 1.4660 1.00 2626 138 0.2014 0.2584 REMARK 3 20 1.4660 - 1.4411 1.00 2657 140 0.2134 0.2650 REMARK 3 21 1.4411 - 1.4179 1.00 2626 138 0.2359 0.2086 REMARK 3 22 1.4179 - 1.4000 0.93 2461 130 0.2792 0.3092 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.08 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2656 REMARK 3 ANGLE : 1.039 3582 REMARK 3 CHIRALITY : 0.078 381 REMARK 3 PLANARITY : 0.007 452 REMARK 3 DIHEDRAL : 13.998 1030 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6808 13.1819 -24.1355 REMARK 3 T TENSOR REMARK 3 T11: 0.1207 T22: 0.1166 REMARK 3 T33: 0.1173 T12: -0.0164 REMARK 3 T13: -0.0150 T23: -0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.1520 L22: 0.0920 REMARK 3 L33: 0.4064 L12: -0.0663 REMARK 3 L13: -0.1943 L23: -0.0140 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.0550 S13: 0.0464 REMARK 3 S21: -0.0428 S22: -0.0343 S23: 0.0280 REMARK 3 S31: -0.0448 S32: -0.0638 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.1521 4.4356 -34.3874 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.0819 REMARK 3 T33: 0.0840 T12: -0.0031 REMARK 3 T13: -0.0261 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6903 L22: 0.6067 REMARK 3 L33: 0.9693 L12: -0.1859 REMARK 3 L13: 0.2954 L23: 0.4748 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0102 S13: 0.0666 REMARK 3 S21: -0.0571 S22: -0.0440 S23: 0.1613 REMARK 3 S31: -0.0820 S32: -0.0197 S33: -0.0019 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9607 -5.7845 -30.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.1450 T22: 0.0930 REMARK 3 T33: 0.0844 T12: 0.0146 REMARK 3 T13: -0.0265 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.3293 L22: 0.1622 REMARK 3 L33: 0.3056 L12: 0.0306 REMARK 3 L13: 0.3148 L23: -0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.0973 S13: -0.0345 REMARK 3 S21: -0.2044 S22: 0.0066 S23: -0.0537 REMARK 3 S31: 0.2941 S32: 0.0903 S33: -0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2933 -1.4326 -8.5028 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.0806 REMARK 3 T33: 0.0870 T12: -0.0088 REMARK 3 T13: 0.0126 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.9474 L22: 0.7336 REMARK 3 L33: 0.8197 L12: -0.1383 REMARK 3 L13: 0.3584 L23: 0.1764 REMARK 3 S TENSOR REMARK 3 S11: 0.0320 S12: 0.0094 S13: -0.0812 REMARK 3 S21: 0.0503 S22: -0.0321 S23: -0.0551 REMARK 3 S31: 0.1409 S32: 0.0340 S33: 0.0024 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1480 2.5205 -14.9513 REMARK 3 T TENSOR REMARK 3 T11: 0.0904 T22: 0.1381 REMARK 3 T33: 0.1009 T12: 0.0052 REMARK 3 T13: 0.0008 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.1848 L22: 0.5836 REMARK 3 L33: 0.4450 L12: 0.2189 REMARK 3 L13: 0.2852 L23: 0.2876 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.0738 S13: -0.0332 REMARK 3 S21: -0.0042 S22: 0.0244 S23: -0.0936 REMARK 3 S31: 0.0345 S32: 0.1539 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.9459 9.0052 -5.9890 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.0806 REMARK 3 T33: 0.0791 T12: 0.0032 REMARK 3 T13: -0.0022 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.5930 L22: 0.4796 REMARK 3 L33: 0.6585 L12: 0.1771 REMARK 3 L13: 0.0688 L23: 0.1235 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: -0.0041 S13: 0.0027 REMARK 3 S21: 0.0206 S22: -0.0035 S23: -0.0229 REMARK 3 S31: 0.0039 S32: 0.0643 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SLD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103913. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000050 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.396 REMARK 200 RESOLUTION RANGE LOW (A) : 45.095 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.74 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 11.73 REMARK 200 R MERGE FOR SHELL (I) : 1.27400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (W/V) PEG3350, 10% GLYCEROL (W/V), REMARK 280 100MM KALIUMPHOSPHATE 100MM AMMONIUMACETAT, PH 5.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 558 O HOH A 811 2.02 REMARK 500 O HOH A 745 O HOH A 838 2.04 REMARK 500 O HOH A 557 O HOH A 828 2.05 REMARK 500 O HOH A 805 O HOH A 854 2.06 REMARK 500 O HOH A 533 O HOH A 538 2.08 REMARK 500 O HOH A 890 O HOH A 891 2.09 REMARK 500 O HOH A 677 O HOH A 790 2.11 REMARK 500 O HOH A 721 O HOH A 848 2.13 REMARK 500 O HOH A 642 O HOH A 855 2.17 REMARK 500 O HOH A 747 O HOH A 849 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 732 O HOH A 886 3444 1.91 REMARK 500 O HOH A 680 O HOH A 889 2355 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 56 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 56 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 115 -148.61 65.51 REMARK 500 ASP A 283 66.49 -155.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 887 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 888 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A 889 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 890 DISTANCE = 8.19 ANGSTROMS REMARK 525 HOH A 891 DISTANCE = 8.62 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B7N A 401 DBREF 6SLD A 4 310 UNP P33324 YKJ1_YEAST 4 310 SEQADV 6SLD ILE A 175 UNP P33324 SER 175 ENGINEERED MUTATION SEQADV 6SLD ILE A 177 UNP P33324 THR 177 ENGINEERED MUTATION SEQRES 1 A 307 SER ILE LEU ASP THR TYR PRO GLN ILE CYS SER PRO ASN SEQRES 2 A 307 ALA LEU PRO GLY THR PRO GLY ASN LEU THR LYS GLU GLN SEQRES 3 A 307 GLU GLU ALA LEU LEU GLN PHE ARG SER ILE LEU LEU GLU SEQRES 4 A 307 LYS ASN TYR LYS GLU ARG LEU ASP ASP SER THR LEU LEU SEQRES 5 A 307 ARG PHE LEU ARG ALA ARG LYS PHE ASP ILE ASN ALA SER SEQRES 6 A 307 VAL GLU MET PHE VAL GLU THR GLU ARG TRP ARG GLU GLU SEQRES 7 A 307 TYR GLY ALA ASN THR ILE ILE GLU ASP TYR GLU ASN ASN SEQRES 8 A 307 LYS GLU ALA GLU ASP LYS GLU ARG ILE LYS LEU ALA LYS SEQRES 9 A 307 MET TYR PRO GLN TYR TYR HIS HIS VAL ASP LYS ASP GLY SEQRES 10 A 307 ARG PRO LEU TYR PHE GLU GLU LEU GLY GLY ILE ASN LEU SEQRES 11 A 307 LYS LYS MET TYR LYS ILE THR THR GLU LYS GLN MET LEU SEQRES 12 A 307 ARG ASN LEU VAL LYS GLU TYR GLU LEU PHE ALA THR TYR SEQRES 13 A 307 ARG VAL PRO ALA CYS SER ARG ARG ALA GLY TYR LEU ILE SEQRES 14 A 307 GLU THR ILE CYS ILE VAL LEU ASP LEU LYS GLY ILE SER SEQRES 15 A 307 LEU SER ASN ALA TYR HIS VAL LEU SER TYR ILE LYS ASP SEQRES 16 A 307 VAL ALA ASP ILE SER GLN ASN TYR TYR PRO GLU ARG MET SEQRES 17 A 307 GLY LYS PHE TYR ILE ILE HIS SER PRO PHE GLY PHE SER SEQRES 18 A 307 THR MET PHE LYS MET VAL LYS PRO PHE LEU ASP PRO VAL SEQRES 19 A 307 THR VAL SER LYS ILE PHE ILE LEU GLY SER SER TYR LYS SEQRES 20 A 307 LYS GLU LEU LEU LYS GLN ILE PRO ILE GLU ASN LEU PRO SEQRES 21 A 307 VAL LYS TYR GLY GLY THR SER VAL LEU HIS ASN PRO ASN SEQRES 22 A 307 ASP LYS PHE TYR TYR SER ASP ILE GLY PRO TRP ARG ASP SEQRES 23 A 307 PRO ARG TYR ILE GLY PRO GLU GLY GLU ILE PRO ASN ILE SEQRES 24 A 307 PHE GLY LYS PHE THR VAL THR SER HET B7N A 401 143 HETNAM B7N (1R)-2-{[(S)-HYDROXY{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6- HETNAM 2 B7N PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL]OXY}-1- HETNAM 3 B7N [(OCTADECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE FORMUL 2 B7N C45 H85 O13 P FORMUL 3 HOH *391(H2 O) HELIX 1 AA1 SER A 4 TYR A 9 5 6 HELIX 2 AA2 THR A 26 LYS A 43 1 18 HELIX 3 AA3 ASP A 50 ARG A 61 1 12 HELIX 4 AA4 ASP A 64 TYR A 82 1 19 HELIX 5 AA5 GLY A 83 ASN A 85 5 3 HELIX 6 AA6 THR A 86 ASN A 94 1 9 HELIX 7 AA7 ASN A 94 LYS A 107 1 14 HELIX 8 AA8 ASN A 132 THR A 140 1 9 HELIX 9 AA9 THR A 141 TYR A 159 1 19 HELIX 10 AB1 TYR A 159 GLY A 169 1 11 HELIX 11 AB2 SER A 185 VAL A 192 1 8 HELIX 12 AB3 VAL A 192 TYR A 207 1 16 HELIX 13 AB4 GLY A 222 PHE A 227 1 6 HELIX 14 AB5 LYS A 228 LEU A 234 5 7 HELIX 15 AB6 ASP A 235 SER A 240 1 6 HELIX 16 AB7 SER A 248 ILE A 257 1 10 HELIX 17 AB8 PRO A 258 LEU A 262 5 5 HELIX 18 AB9 PRO A 263 GLY A 267 5 5 HELIX 19 AC1 LYS A 278 SER A 282 5 5 HELIX 20 AC2 GLY A 285 ASP A 289 5 5 HELIX 21 AC3 PHE A 303 THR A 307 5 5 SHEET 1 AA1 5 GLN A 111 VAL A 116 0 SHEET 2 AA1 5 PRO A 122 GLU A 127 -1 O PHE A 125 N TYR A 112 SHEET 3 AA1 5 ILE A 175 ASP A 180 1 O ASP A 180 N GLU A 126 SHEET 4 AA1 5 MET A 211 ILE A 217 1 O TYR A 215 N ILE A 177 SHEET 5 AA1 5 ILE A 242 ILE A 244 1 O PHE A 243 N PHE A 214 SITE 1 AC1 27 ALA A 60 ARG A 61 MET A 71 TYR A 109 SITE 2 AC1 27 LEU A 128 MET A 136 TYR A 137 TYR A 153 SITE 3 AC1 27 LEU A 179 TYR A 195 SER A 203 GLN A 204 SITE 4 AC1 27 TYR A 207 PRO A 208 GLU A 209 ARG A 210 SITE 5 AC1 27 MET A 211 PHE A 227 LEU A 234 ASP A 235 SITE 6 AC1 27 VAL A 237 THR A 238 LYS A 241 HOH A 559 SITE 7 AC1 27 HOH A 580 HOH A 608 HOH A 659 CRYST1 48.220 70.810 90.190 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011088 0.00000