HEADER ONCOPROTEIN 20-AUG-19 6SLM TITLE CRYSTAL STRUCTURE OF FULL-LENGTH HPV31 E6 ONCOPROTEIN IN COMPLEX WITH TITLE 2 LXXLL PEPTIDE OF UBIQUITIN LIGASE E6AP COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALTOSE/MALTODEXTRIN-BINDING PERIPLASMIC PROTEIN,PROTEIN COMPND 3 E6,UBIQUITIN-PROTEIN LIGASE E3A; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MMBP,MALTODEXTRIN-BINDING PROTEIN,MALTOSE-BINDING PROTEIN, COMPND 6 MBP,E6AP UBIQUITIN-PROTEIN LIGASE,HECT-TYPE UBIQUITIN TRANSFERASE COMPND 7 E3A,HUMAN PAPILLOMAVIRUS E6-ASSOCIATED PROTEIN,ONCOGENIC PROTEIN- COMPND 8 ASSOCIATED PROTEIN E6-AP,RENAL CARCINOMA ANTIGEN NY-REN-54; COMPND 9 EC: 2.3.2.26; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12), HUMAN SOURCE 3 PAPILLOMAVIRUS TYPE 31, HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 83333, 10585, 9606; SOURCE 6 STRAIN: K12; SOURCE 7 GENE: MALE, B4034, JW3994, E6, UBE3A, E6AP, EPVE6AP, HPVE6A; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEIN, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.CONRADY,G.GOGL,A.COUSIDO-SIAH,A.MITSCHLER,G.TRAVE,C.SIMON REVDAT 3 24-JAN-24 6SLM 1 REMARK REVDAT 2 24-MAR-21 6SLM 1 JRNL REVDAT 1 09-SEP-20 6SLM 0 JRNL AUTH M.C.CONRADY,I.SUAREZ,G.GOGL,D.I.FRECOT,A.BONHOURE, JRNL AUTH 2 C.KOSTMANN,A.COUSIDO-SIAH,A.MITSCHLER,J.LIM,M.MASSON, JRNL AUTH 3 T.IFTNER,F.STUBENRAUCH,G.TRAVE,C.SIMON JRNL TITL STRUCTURE OF HIGH-RISK PAPILLOMAVIRUS 31 E6 ONCOGENIC JRNL TITL 2 PROTEIN AND CHARACTERIZATION OF E6/E6AP/P53 COMPLEX JRNL TITL 3 FORMATION. JRNL REF J.VIROL. V. 95 2020 JRNL REFN ESSN 1098-5514 JRNL PMID 33115863 JRNL DOI 10.1128/JVI.00730-20 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2080 - 5.0900 1.00 3081 159 0.2073 0.2454 REMARK 3 2 5.0900 - 4.0400 1.00 2874 150 0.1954 0.2210 REMARK 3 3 4.0400 - 3.5300 0.99 2827 154 0.2306 0.2825 REMARK 3 4 3.5300 - 3.2100 0.99 2806 149 0.2598 0.3007 REMARK 3 5 3.2100 - 2.9800 0.99 2770 153 0.3072 0.3704 REMARK 3 6 2.9800 - 2.8000 0.99 2791 129 0.3157 0.3424 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.10 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.394 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.687 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4347 REMARK 3 ANGLE : 0.619 5898 REMARK 3 CHIRALITY : 0.044 648 REMARK 3 PLANARITY : 0.003 758 REMARK 3 DIHEDRAL : 16.920 1596 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 631 THROUGH 1011 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.1707 -48.1315 4.0964 REMARK 3 T TENSOR REMARK 3 T11: 0.5056 T22: 0.7515 REMARK 3 T33: 0.8875 T12: -0.1507 REMARK 3 T13: -0.2027 T23: 0.4008 REMARK 3 L TENSOR REMARK 3 L11: 2.2632 L22: 4.7829 REMARK 3 L33: 2.9553 L12: -0.6314 REMARK 3 L13: 0.2030 L23: -2.0086 REMARK 3 S TENSOR REMARK 3 S11: 0.0510 S12: -0.1536 S13: 0.0509 REMARK 3 S21: -0.4485 S22: 0.7405 S23: 1.1128 REMARK 3 S31: 0.0649 S32: -0.9314 S33: -0.5226 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1012 THROUGH 1138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2831 -20.7410 -15.4806 REMARK 3 T TENSOR REMARK 3 T11: 0.2971 T22: 0.3252 REMARK 3 T33: 0.2793 T12: -0.0763 REMARK 3 T13: 0.0731 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 4.7238 L22: 3.8919 REMARK 3 L33: 6.4257 L12: -1.8387 REMARK 3 L13: 2.3456 L23: -2.5950 REMARK 3 S TENSOR REMARK 3 S11: -0.3153 S12: 0.1645 S13: -0.0596 REMARK 3 S21: 0.0263 S22: 0.0102 S23: -0.1798 REMARK 3 S31: -0.1855 S32: 0.0246 S33: 0.2887 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1139 THROUGH 1179 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0260 -21.6194 -21.0676 REMARK 3 T TENSOR REMARK 3 T11: 0.3895 T22: 0.5497 REMARK 3 T33: 0.5339 T12: -0.0990 REMARK 3 T13: -0.0402 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 5.7106 L22: 6.3233 REMARK 3 L33: 9.0275 L12: -2.7725 REMARK 3 L13: -1.7682 L23: -0.6959 REMARK 3 S TENSOR REMARK 3 S11: 0.1049 S12: 0.1694 S13: -0.1003 REMARK 3 S21: -0.0387 S22: -0.4823 S23: -0.7049 REMARK 3 S31: 0.0217 S32: 0.2954 S33: 0.3214 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SLM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292103924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 19.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 18.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XR8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200MM TRI-LITHIUM CITRATE, 20% PEG REMARK 280 33350 PROTEIN CONCENTRATION: 30MG/ML CRYO CONDITION: 35% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.99000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 123.98000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.98500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 154.97500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 30.99500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.99000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 123.98000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 154.97500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.98500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 30.99500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 630 REMARK 465 SER A 1154 REMARK 465 GLY A 1155 REMARK 465 SER A 1156 REMARK 465 GLY A 1157 REMARK 465 SER A 1158 REMARK 465 GLY A 1159 REMARK 465 SER A 1160 REMARK 465 GLY A 1161 REMARK 465 SER A 1162 REMARK 465 ALA A 1163 REMARK 465 ARG A 1180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 631 CG CD CE NZ REMARK 470 GLU A 634 CG CD OE1 OE2 REMARK 470 LYS A 636 CE NZ REMARK 470 GLU A 908 CG CD OE1 OE2 REMARK 470 LEU A 915 CG CD1 CD2 REMARK 470 GLN A1148 CD OE1 NE2 REMARK 470 SER A1151 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 GLC B 1 O2 GLC B 2 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 685 -164.93 -101.51 REMARK 500 PRO A 711 -165.56 -72.74 REMARK 500 ILE A 738 -68.79 -121.78 REMARK 500 ALA A 798 -76.85 -77.83 REMARK 500 ASP A 839 -162.18 -118.83 REMARK 500 ASP A 926 -73.63 -68.03 REMARK 500 LYS A1034 16.62 59.02 REMARK 500 ARG A1080 -64.74 -99.37 REMARK 500 ASN A1093 49.97 34.00 REMARK 500 ARG A1142 71.95 59.13 REMARK 500 SER A1152 59.71 -147.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1030 SG REMARK 620 2 CYS A1033 SG 114.0 REMARK 620 3 CYS A1063 SG 111.2 114.4 REMARK 620 4 CYS A1066 SG 104.3 116.4 94.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1103 SG REMARK 620 2 CYS A1106 SG 110.8 REMARK 620 3 CYS A1136 SG 102.5 113.6 REMARK 620 4 CYS A1139 SG 104.9 114.1 109.9 REMARK 620 N 1 2 3 DBREF 6SLM A 630 1000 UNP P0AEX9 MALE_ECOLI 26 396 DBREF 6SLM A 1001 1149 UNP P17386 VE6_HPV31 1 149 DBREF 6SLM A 1166 1180 UNP Q05086 UBE3A_HUMAN 403 417 SEQADV 6SLM MET A 630 UNP P0AEX9 ALA 26 CONFLICT SEQADV 6SLM ALA A 712 UNP P0AEX9 ASP 108 CONFLICT SEQADV 6SLM ALA A 713 UNP P0AEX9 LYS 109 CONFLICT SEQADV 6SLM ALA A 869 UNP P0AEX9 LYS 265 CONFLICT SEQADV 6SLM ALA A 989 UNP P0AEX9 GLU 385 CONFLICT SEQADV 6SLM ALA A 992 UNP P0AEX9 LYS 388 CONFLICT SEQADV 6SLM ALA A 993 UNP P0AEX9 ASP 389 CONFLICT SEQADV 6SLM ASN A 997 UNP P0AEX9 ARG 393 CONFLICT SEQADV 6SLM ALA A 998 UNP P0AEX9 ILE 394 CONFLICT SEQADV 6SLM ALA A 999 UNP P0AEX9 THR 395 CONFLICT SEQADV 6SLM ALA A 1000 UNP P0AEX9 LYS 396 CONFLICT SEQADV 6SLM SER A 1097 UNP P17386 CYS 97 CONFLICT SEQADV 6SLM SER A 1111 UNP P17386 CYS 111 CONFLICT SEQADV 6SLM GLY A 1150 UNP P17386 LINKER SEQADV 6SLM SER A 1151 UNP P17386 LINKER SEQADV 6SLM SER A 1152 UNP P17386 LINKER SEQADV 6SLM GLY A 1153 UNP P17386 LINKER SEQADV 6SLM SER A 1154 UNP P17386 LINKER SEQADV 6SLM GLY A 1155 UNP P17386 LINKER SEQADV 6SLM SER A 1156 UNP P17386 LINKER SEQADV 6SLM GLY A 1157 UNP P17386 LINKER SEQADV 6SLM SER A 1158 UNP P17386 LINKER SEQADV 6SLM GLY A 1159 UNP P17386 LINKER SEQADV 6SLM SER A 1160 UNP P17386 LINKER SEQADV 6SLM GLY A 1161 UNP P17386 LINKER SEQADV 6SLM SER A 1162 UNP P17386 LINKER SEQADV 6SLM ALA A 1163 UNP P17386 LINKER SEQADV 6SLM ALA A 1164 UNP P17386 LINKER SEQADV 6SLM ALA A 1165 UNP P17386 LINKER SEQRES 1 A 551 MET LYS ILE GLU GLU GLY LYS LEU VAL ILE TRP ILE ASN SEQRES 2 A 551 GLY ASP LYS GLY TYR ASN GLY LEU ALA GLU VAL GLY LYS SEQRES 3 A 551 LYS PHE GLU LYS ASP THR GLY ILE LYS VAL THR VAL GLU SEQRES 4 A 551 HIS PRO ASP LYS LEU GLU GLU LYS PHE PRO GLN VAL ALA SEQRES 5 A 551 ALA THR GLY ASP GLY PRO ASP ILE ILE PHE TRP ALA HIS SEQRES 6 A 551 ASP ARG PHE GLY GLY TYR ALA GLN SER GLY LEU LEU ALA SEQRES 7 A 551 GLU ILE THR PRO ALA ALA ALA PHE GLN ASP LYS LEU TYR SEQRES 8 A 551 PRO PHE THR TRP ASP ALA VAL ARG TYR ASN GLY LYS LEU SEQRES 9 A 551 ILE ALA TYR PRO ILE ALA VAL GLU ALA LEU SER LEU ILE SEQRES 10 A 551 TYR ASN LYS ASP LEU LEU PRO ASN PRO PRO LYS THR TRP SEQRES 11 A 551 GLU GLU ILE PRO ALA LEU ASP LYS GLU LEU LYS ALA LYS SEQRES 12 A 551 GLY LYS SER ALA LEU MET PHE ASN LEU GLN GLU PRO TYR SEQRES 13 A 551 PHE THR TRP PRO LEU ILE ALA ALA ASP GLY GLY TYR ALA SEQRES 14 A 551 PHE LYS TYR GLU ASN GLY LYS TYR ASP ILE LYS ASP VAL SEQRES 15 A 551 GLY VAL ASP ASN ALA GLY ALA LYS ALA GLY LEU THR PHE SEQRES 16 A 551 LEU VAL ASP LEU ILE LYS ASN LYS HIS MET ASN ALA ASP SEQRES 17 A 551 THR ASP TYR SER ILE ALA GLU ALA ALA PHE ASN LYS GLY SEQRES 18 A 551 GLU THR ALA MET THR ILE ASN GLY PRO TRP ALA TRP SER SEQRES 19 A 551 ASN ILE ASP THR SER ALA VAL ASN TYR GLY VAL THR VAL SEQRES 20 A 551 LEU PRO THR PHE LYS GLY GLN PRO SER LYS PRO PHE VAL SEQRES 21 A 551 GLY VAL LEU SER ALA GLY ILE ASN ALA ALA SER PRO ASN SEQRES 22 A 551 LYS GLU LEU ALA LYS GLU PHE LEU GLU ASN TYR LEU LEU SEQRES 23 A 551 THR ASP GLU GLY LEU GLU ALA VAL ASN LYS ASP LYS PRO SEQRES 24 A 551 LEU GLY ALA VAL ALA LEU LYS SER TYR GLU GLU GLU LEU SEQRES 25 A 551 ALA LYS ASP PRO ARG ILE ALA ALA THR MET GLU ASN ALA SEQRES 26 A 551 GLN LYS GLY GLU ILE MET PRO ASN ILE PRO GLN MET SER SEQRES 27 A 551 ALA PHE TRP TYR ALA VAL ARG THR ALA VAL ILE ASN ALA SEQRES 28 A 551 ALA SER GLY ARG GLN THR VAL ASP ALA ALA LEU ALA ALA SEQRES 29 A 551 ALA GLN THR ASN ALA ALA ALA MET PHE LYS ASN PRO ALA SEQRES 30 A 551 GLU ARG PRO ARG LYS LEU HIS GLU LEU SER SER ALA LEU SEQRES 31 A 551 GLU ILE PRO TYR ASP GLU LEU ARG LEU ASN CYS VAL TYR SEQRES 32 A 551 CYS LYS GLY GLN LEU THR GLU THR GLU VAL LEU ASP PHE SEQRES 33 A 551 ALA PHE THR ASP LEU THR ILE VAL TYR ARG ASP ASP THR SEQRES 34 A 551 PRO HIS GLY VAL CYS THR LYS CYS LEU ARG PHE TYR SER SEQRES 35 A 551 LYS VAL SER GLU PHE ARG TRP TYR ARG TYR SER VAL TYR SEQRES 36 A 551 GLY THR THR LEU GLU LYS LEU THR ASN LYS GLY ILE SER SEQRES 37 A 551 ASP LEU LEU ILE ARG CYS ILE THR CYS GLN ARG PRO LEU SEQRES 38 A 551 SER PRO GLU GLU LYS GLN ARG HIS LEU ASP LYS LYS LYS SEQRES 39 A 551 ARG PHE HIS ASN ILE GLY GLY ARG TRP THR GLY ARG CYS SEQRES 40 A 551 ILE ALA CYS TRP ARG ARG PRO ARG THR GLU THR GLN VAL SEQRES 41 A 551 GLY SER SER GLY SER GLY SER GLY SER GLY SER GLY SER SEQRES 42 A 551 ALA ALA ALA GLU SER SER GLU LEU THR LEU GLN GLU LEU SEQRES 43 A 551 LEU GLY GLU GLU ARG HET GLC B 1 12 HET GLC B 2 11 HET ZN A1201 1 HET ZN A1202 1 HET GOL A1203 6 HET GOL A1204 6 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *31(H2 O) HELIX 1 AA1 GLY A 646 GLY A 662 1 17 HELIX 2 AA2 LYS A 672 ALA A 682 1 11 HELIX 3 AA3 ARG A 696 SER A 703 1 8 HELIX 4 AA4 TYR A 720 ALA A 726 1 7 HELIX 5 AA5 GLU A 761 ALA A 771 1 11 HELIX 6 AA6 GLU A 783 ALA A 792 1 10 HELIX 7 AA7 ASN A 815 ASN A 831 1 17 HELIX 8 AA8 ASP A 839 LYS A 849 1 11 HELIX 9 AA9 GLY A 858 TRP A 860 5 3 HELIX 10 AB1 ALA A 861 SER A 868 1 8 HELIX 11 AB2 GLU A 904 TYR A 913 1 10 HELIX 12 AB3 THR A 916 LYS A 927 1 12 HELIX 13 AB4 LEU A 934 LEU A 941 1 8 HELIX 14 AB5 ASP A 944 GLY A 957 1 14 HELIX 15 AB6 GLN A 965 SER A 982 1 18 HELIX 16 AB7 THR A 986 ALA A 998 1 13 HELIX 17 AB8 LYS A 1011 GLU A 1020 1 10 HELIX 18 AB9 PRO A 1022 LEU A 1026 5 5 HELIX 19 AC1 THR A 1038 THR A 1048 1 11 HELIX 20 AC2 CYS A 1063 TRP A 1078 1 16 HELIX 21 AC3 TYR A 1084 ASN A 1093 1 10 HELIX 22 AC4 GLY A 1095 LEU A 1099 5 5 HELIX 23 AC5 SER A 1111 LYS A 1122 1 12 HELIX 24 AC6 GLU A 1166 GLY A 1177 1 12 SHEET 1 AA1 6 VAL A 665 GLU A 668 0 SHEET 2 AA1 6 LEU A 637 TRP A 640 1 N ILE A 639 O GLU A 668 SHEET 3 AA1 6 ILE A 689 ALA A 693 1 O ILE A 689 N TRP A 640 SHEET 4 AA1 6 PHE A 888 ILE A 896 -1 O SER A 893 N TRP A 692 SHEET 5 AA1 6 TYR A 736 GLU A 741 -1 N GLU A 741 O GLY A 890 SHEET 6 AA1 6 ALA A 931 VAL A 932 -1 O ALA A 931 N VAL A 740 SHEET 1 AA2 5 VAL A 665 GLU A 668 0 SHEET 2 AA2 5 LEU A 637 TRP A 640 1 N ILE A 639 O GLU A 668 SHEET 3 AA2 5 ILE A 689 ALA A 693 1 O ILE A 689 N TRP A 640 SHEET 4 AA2 5 PHE A 888 ILE A 896 -1 O SER A 893 N TRP A 692 SHEET 5 AA2 5 GLU A 958 ILE A 959 1 O GLU A 958 N VAL A 889 SHEET 1 AA3 2 ARG A 728 TYR A 729 0 SHEET 2 AA3 2 LYS A 732 LEU A 733 -1 O LYS A 732 N TYR A 729 SHEET 1 AA4 4 SER A 775 LEU A 777 0 SHEET 2 AA4 4 THR A 852 ASN A 857 1 O MET A 854 N ALA A 776 SHEET 3 AA4 4 SER A 744 ASN A 748 -1 N ILE A 746 O THR A 855 SHEET 4 AA4 4 TYR A 872 THR A 875 -1 O GLY A 873 N TYR A 747 SHEET 1 AA5 2 TYR A 797 GLU A 802 0 SHEET 2 AA5 2 LYS A 805 GLY A 812 -1 O ASP A 807 N LYS A 800 SHEET 1 AA6 2 VAL A1053 ARG A1055 0 SHEET 2 AA6 2 THR A1058 HIS A1060 -1 O HIS A1060 N VAL A1053 SHEET 1 AA7 4 TYR A1079 VAL A1083 0 SHEET 2 AA7 4 PHE A1125 ILE A1128 -1 O ASN A1127 N TYR A1081 SHEET 3 AA7 4 ARG A1131 GLY A1134 -1 O ARG A1131 N ILE A1128 SHEET 4 AA7 4 ARG A1102 CYS A1103 1 N ARG A1102 O GLY A1134 LINK O4 GLC B 1 C1 GLC B 2 1555 1555 1.40 LINK SG CYS A1030 ZN ZN A1202 1555 1555 2.32 LINK SG CYS A1033 ZN ZN A1202 1555 1555 2.29 LINK SG CYS A1063 ZN ZN A1202 1555 1555 2.29 LINK SG CYS A1066 ZN ZN A1202 1555 1555 2.27 LINK SG CYS A1103 ZN ZN A1201 1555 1555 2.29 LINK SG CYS A1106 ZN ZN A1201 1555 1555 2.27 LINK SG CYS A1136 ZN ZN A1201 1555 1555 2.28 LINK SG CYS A1139 ZN ZN A1201 1555 1555 2.29 CRYST1 113.640 113.640 185.970 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008800 0.005081 0.000000 0.00000 SCALE2 0.000000 0.010161 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005377 0.00000