HEADER IMMUNE SYSTEM 27-AUG-19 6SNY
TITLE SYNTHETIC MIMIC OF AN EPCR-BINDING PFEMP1 BOUND TO EPCR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: SYNTHETIC EPCR BINDING PROTEIN;
COMPND 3 CHAIN: A;
COMPND 4 ENGINEERED: YES;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: ENDOTHELIAL PROTEIN C RECEPTOR;
COMPND 7 CHAIN: B, C;
COMPND 8 SYNONYM: ACTIVATED PROTEIN C RECEPTOR,APC RECEPTOR,ENDOTHELIAL CELL
COMPND 9 PROTEIN C RECEPTOR;
COMPND 10 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 3 ORGANISM_TAXID: 32630;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 6 MOL_ID: 2;
SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 8 ORGANISM_COMMON: HUMAN;
SOURCE 9 ORGANISM_TAXID: 9606;
SOURCE 10 GENE: PROCR, EPCR;
SOURCE 11 EXPRESSION_SYSTEM: DROSOPHILA MELANOGASTER;
SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7227
KEYWDS PFEMP1 EPCR VACCINE IMMUNOGEN, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR N.M.BARBER,M.K.HIGGINS
REVDAT 5 16-OCT-24 6SNY 1 JRNL REMARK
REVDAT 4 20-JAN-21 6SNY 1 JRNL HETSYN
REVDAT 3 29-JUL-20 6SNY 1 COMPND REMARK HETNAM LINK
REVDAT 3 2 1 SITE ATOM
REVDAT 2 18-MAR-20 6SNY 1 JRNL
REVDAT 1 04-SEP-19 6SNY 0
JRNL AUTH N.M.BARBER,C.K.Y.LAU,L.TURNER,G.WATSON,S.THRANE,
JRNL AUTH 2 J.P.A.LUSINGU,T.LAVSTSEN,M.K.HIGGINS
JRNL TITL STRUCTURE-GUIDED DESIGN OF A SYNTHETIC MIMIC OF AN
JRNL TITL 2 ENDOTHELIAL PROTEIN C RECEPTOR-BINDING PFEMP1 PROTEIN.
JRNL REF MSPHERE V. 6 2021
JRNL REFN ESSN 2379-5042
JRNL PMID 33408232
JRNL DOI 10.1128/MSPHERE.01081-20
REMARK 1
REMARK 1 REFERENCE 1
REMARK 1 AUTH N.M.BARBER,C.K.Y.LAU,L.TURNER,G.WATSON,S.THRANE,
REMARK 1 AUTH 2 J.P.A.LUISNGHU,T.LAVSTSEN,M.K.HIGGINS
REMARK 1 TITL STRUCTURE-GUIDED DESIGN OF A SYNTHETIC MIMIC OF AN
REMARK 1 TITL 2 EPCR-BINDING PFEMP1 PROTEIN
REMARK 1 REF BIORXIV 2019
REMARK 1 REFN ISSN 2692-8205
REMARK 1 DOI 10.1101/749432
REMARK 2
REMARK 2 RESOLUTION. 3.11 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.3
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.88
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 89.9
REMARK 3 NUMBER OF REFLECTIONS : 20506
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.225
REMARK 3 R VALUE (WORKING SET) : 0.224
REMARK 3 FREE R VALUE : 0.256
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1025
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 50
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.14
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.13
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 411
REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 390
REMARK 3 BIN R VALUE (WORKING SET) : 0.3317
REMARK 3 BIN FREE R VALUE : 0.3780
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.11
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 21
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3714
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 301
REMARK 3 SOLVENT ATOMS : 0
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 128.4
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -12.26600
REMARK 3 B22 (A**2) : -12.26600
REMARK 3 B33 (A**2) : 24.53200
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.440
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.653
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.355
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.685
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.364
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.912
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 4119 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 5571 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1575 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 687 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3805 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 542 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 4467 ; 0.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.010
REMARK 3 BOND ANGLES (DEGREES) : 1.19
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.80
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 23.13
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 23.2560 -19.2644 32.0350
REMARK 3 T TENSOR
REMARK 3 T11: 0.0939 T22: 0.0584
REMARK 3 T33: -0.0571 T12: -0.2733
REMARK 3 T13: 0.1906 T23: -0.0261
REMARK 3 L TENSOR
REMARK 3 L11: 1.0916 L22: -0.7720
REMARK 3 L33: 1.9387 L12: -0.3534
REMARK 3 L13: -1.1319 L23: 0.6544
REMARK 3 S TENSOR
REMARK 3 S11: -0.0904 S12: -0.0286 S13: -0.0182
REMARK 3 S21: 0.0005 S22: 0.0739 S23: 0.0658
REMARK 3 S31: 0.0894 S32: -0.3899 S33: 0.0165
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: { B|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 43.3799 -22.2309 9.2142
REMARK 3 T TENSOR
REMARK 3 T11: 0.0859 T22: -0.1660
REMARK 3 T33: -0.0176 T12: -0.0858
REMARK 3 T13: 0.0777 T23: -0.0713
REMARK 3 L TENSOR
REMARK 3 L11: 0.1292 L22: 2.1580
REMARK 3 L33: 2.3279 L12: -0.4239
REMARK 3 L13: 0.2353 L23: 0.6686
REMARK 3 S TENSOR
REMARK 3 S11: -0.0617 S12: 0.2968 S13: 0.1228
REMARK 3 S21: 0.0573 S22: -0.0542 S23: -0.1172
REMARK 3 S31: 0.1838 S32: 0.0384 S33: 0.1159
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: { C|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 38.5720 -45.7070 -13.7502
REMARK 3 T TENSOR
REMARK 3 T11: -0.0406 T22: 0.0406
REMARK 3 T33: -0.0748 T12: -0.3276
REMARK 3 T13: 0.0070 T23: -0.1190
REMARK 3 L TENSOR
REMARK 3 L11: 0.7254 L22: 0.7992
REMARK 3 L33: 2.4202 L12: 0.3801
REMARK 3 L13: -0.7378 L23: -0.3741
REMARK 3 S TENSOR
REMARK 3 S11: 0.1500 S12: -0.1994 S13: 0.0502
REMARK 3 S21: 0.1806 S22: -0.3563 S23: 0.1782
REMARK 3 S31: -0.1018 S32: 0.1786 S33: 0.2063
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6SNY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-AUG-19.
REMARK 100 THE DEPOSITION ID IS D_1292104020.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 03-DEC-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I02
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2
REMARK 200 DATA SCALING SOFTWARE : XIA2
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20508
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.110
REMARK 200 RESOLUTION RANGE LOW (A) : 46.880
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 200 DATA REDUNDANCY : 6.500
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 1.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.11
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 79.05
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.87
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM CITRATE, 0.1M HEPES PH 7,
REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.32800
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 56.16400
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 56.16400
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 112.32800
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G, H
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 ALA A 35
REMARK 465 ARG A 36
REMARK 465 LYS A 37
REMARK 465 THR A 38
REMARK 465 GLU A 39
REMARK 465 ASP A 40
REMARK 465 PRO A 41
REMARK 465 THR A 42
REMARK 465 GLU A 43
REMARK 465 GLU A 44
REMARK 465 ALA A 45
REMARK 465 LYS A 46
REMARK 465 LYS A 120
REMARK 465 ARG A 121
REMARK 465 LEU A 122
REMARK 465 GLU A 123
REMARK 465 GLN A 124
REMARK 465 SER B 1
REMARK 465 GLN B 2
REMARK 465 ASP B 3
REMARK 465 ALA B 4
REMARK 465 SER B 5
REMARK 465 ASP B 6
REMARK 465 GLY B 7
REMARK 465 LEU B 8
REMARK 465 SER B 178
REMARK 465 ALA B 179
REMARK 465 GLU B 180
REMARK 465 ASN B 181
REMARK 465 THR B 182
REMARK 465 LYS B 183
REMARK 465 GLY B 184
REMARK 465 SER B 185
REMARK 465 GLN B 186
REMARK 465 THR B 187
REMARK 465 SER B 188
REMARK 465 ARG B 189
REMARK 465 SER B 190
REMARK 465 TYR B 191
REMARK 465 THR B 192
REMARK 465 SER B 193
REMARK 465 SER C 1
REMARK 465 GLN C 2
REMARK 465 ASP C 3
REMARK 465 ALA C 4
REMARK 465 SER C 5
REMARK 465 ASP C 6
REMARK 465 GLY C 7
REMARK 465 LEU C 8
REMARK 465 SER C 178
REMARK 465 ALA C 179
REMARK 465 GLU C 180
REMARK 465 ASN C 181
REMARK 465 THR C 182
REMARK 465 LYS C 183
REMARK 465 GLY C 184
REMARK 465 SER C 185
REMARK 465 GLN C 186
REMARK 465 THR C 187
REMARK 465 SER C 188
REMARK 465 ARG C 189
REMARK 465 SER C 190
REMARK 465 TYR C 191
REMARK 465 THR C 192
REMARK 465 SER C 193
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LYS A 33 42.93 -90.34
REMARK 500 ASN B 47 61.77 -106.90
REMARK 500 THR B 88 113.56 63.42
REMARK 500 ARG B 109 97.35 -67.86
REMARK 500 PHE B 114 96.63 -161.89
REMARK 500 PHE B 123 -75.52 -121.91
REMARK 500 ARG B 158 -84.65 -117.38
REMARK 500 ASN C 47 62.95 -107.84
REMARK 500 THR C 88 113.86 64.46
REMARK 500 PHE C 114 96.32 -161.65
REMARK 500 PHE C 123 -77.57 -121.19
REMARK 500 ARG C 158 -86.68 -118.14
REMARK 500
REMARK 500 REMARK: NULL
REMARK 615
REMARK 615 ZERO OCCUPANCY ATOM
REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO
REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS
REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME;
REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 615 M RES C SSEQI
REMARK 615 NAG E 1
REMARK 615 NAG E 2
REMARK 615 NAG H 2
REMARK 615 MAN H 3
REMARK 615 PTY C 201
REMARK 615 NAG C 204
REMARK 615 NAG C 208
REMARK 615 NAG F 1
REMARK 615 NAG G 1
DBREF 6SNY A 1 124 PDB 6SNY 6SNY 1 124
DBREF 6SNY B 1 193 UNP Q9UNN8 EPCR_HUMAN 18 210
DBREF 6SNY C 1 193 UNP Q9UNN8 EPCR_HUMAN 18 210
SEQRES 1 A 124 ASN ASN TRP GLU GLN GLN LYS LYS ASN ILE GLU ASP ASP
SEQRES 2 A 124 LEU ASP ARG TYR LYS LYS ARG ALA GLU GLU LEU ARG LYS
SEQRES 3 A 124 GLU ALA GLU LYS ALA ARG LYS GLU ALA ARG LYS THR GLU
SEQRES 4 A 124 ASP PRO THR GLU GLU ALA LYS LYS GLU TRP GLU LYS ARG
SEQRES 5 A 124 CYS LYS GLU LEU GLU GLU ARG ALA ARG LYS LEU GLU ASP
SEQRES 6 A 124 GLU ALA LYS ASP ARG VAL ASN ASP LEU PHE ASP SER ASN
SEQRES 7 A 124 PHE PHE GLN VAL ILE TYR SER GLY ASP ASN ASP GLU GLU
SEQRES 8 A 124 GLU TRP LYS LYS GLU LYS ASP ARG ALA GLU LYS GLU ILE
SEQRES 9 A 124 GLU GLU TRP PHE LYS ARG ILE LYS GLU LYS CYS GLU GLU
SEQRES 10 A 124 ILE LYS LYS ARG LEU GLU GLN
SEQRES 1 B 193 SER GLN ASP ALA SER ASP GLY LEU GLN ARG LEU HIS MET
SEQRES 2 B 193 LEU GLN ILE SER TYR PHE ARG ASP PRO TYR HIS VAL TRP
SEQRES 3 B 193 TYR GLN GLY ASN ALA SER LEU GLY GLY HIS LEU THR HIS
SEQRES 4 B 193 VAL LEU GLU GLY PRO ASP THR ASN THR THR ILE ILE GLN
SEQRES 5 B 193 LEU GLN PRO LEU GLN GLU PRO GLU SER TRP ALA ARG THR
SEQRES 6 B 193 GLN SER GLY LEU GLN SER TYR LEU LEU GLN PHE HIS GLY
SEQRES 7 B 193 LEU VAL ARG LEU VAL HIS GLN GLU ARG THR LEU ALA PHE
SEQRES 8 B 193 PRO LEU THR ILE ARG CYS PHE LEU GLY CYS GLU LEU PRO
SEQRES 9 B 193 PRO GLU GLY SER ARG ALA HIS VAL PHE PHE GLU VAL ALA
SEQRES 10 B 193 VAL ASN GLY SER SER PHE VAL SER PHE ARG PRO GLU ARG
SEQRES 11 B 193 ALA LEU TRP GLN ALA ASP THR GLN VAL THR SER GLY VAL
SEQRES 12 B 193 VAL THR PHE THR LEU GLN GLN LEU ASN ALA TYR ASN ARG
SEQRES 13 B 193 THR ARG TYR GLU LEU ARG GLU PHE LEU GLU ASP THR CYS
SEQRES 14 B 193 VAL GLN TYR VAL GLN LYS HIS ILE SER ALA GLU ASN THR
SEQRES 15 B 193 LYS GLY SER GLN THR SER ARG SER TYR THR SER
SEQRES 1 C 193 SER GLN ASP ALA SER ASP GLY LEU GLN ARG LEU HIS MET
SEQRES 2 C 193 LEU GLN ILE SER TYR PHE ARG ASP PRO TYR HIS VAL TRP
SEQRES 3 C 193 TYR GLN GLY ASN ALA SER LEU GLY GLY HIS LEU THR HIS
SEQRES 4 C 193 VAL LEU GLU GLY PRO ASP THR ASN THR THR ILE ILE GLN
SEQRES 5 C 193 LEU GLN PRO LEU GLN GLU PRO GLU SER TRP ALA ARG THR
SEQRES 6 C 193 GLN SER GLY LEU GLN SER TYR LEU LEU GLN PHE HIS GLY
SEQRES 7 C 193 LEU VAL ARG LEU VAL HIS GLN GLU ARG THR LEU ALA PHE
SEQRES 8 C 193 PRO LEU THR ILE ARG CYS PHE LEU GLY CYS GLU LEU PRO
SEQRES 9 C 193 PRO GLU GLY SER ARG ALA HIS VAL PHE PHE GLU VAL ALA
SEQRES 10 C 193 VAL ASN GLY SER SER PHE VAL SER PHE ARG PRO GLU ARG
SEQRES 11 C 193 ALA LEU TRP GLN ALA ASP THR GLN VAL THR SER GLY VAL
SEQRES 12 C 193 VAL THR PHE THR LEU GLN GLN LEU ASN ALA TYR ASN ARG
SEQRES 13 C 193 THR ARG TYR GLU LEU ARG GLU PHE LEU GLU ASP THR CYS
SEQRES 14 C 193 VAL GLN TYR VAL GLN LYS HIS ILE SER ALA GLU ASN THR
SEQRES 15 C 193 LYS GLY SER GLN THR SER ARG SER TYR THR SER
HET NAG D 1 14
HET NAG D 2 14
HET MAN D 3 11
HET NAG E 1 14
HET NAG E 2 14
HET NAG F 1 14
HET NAG F 2 14
HET MAN F 3 11
HET NAG G 1 14
HET NAG G 2 14
HET NAG H 1 14
HET NAG H 2 14
HET MAN H 3 11
HET PTY B 200 50
HET PTY C 201 50
HET NAG C 204 14
HET NAG C 208 14
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM MAN ALPHA-D-MANNOPYRANOSE
HETNAM PTY PHOSPHATIDYLETHANOLAMINE
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE
FORMUL 4 NAG 12(C8 H15 N O6)
FORMUL 4 MAN 3(C6 H12 O6)
FORMUL 9 PTY 2(C40 H80 N O8 P)
HELIX 1 AA1 ASN A 1 ALA A 31 1 31
HELIX 2 AA2 GLU A 50 ASN A 78 1 29
HELIX 3 AA3 ASN A 78 TYR A 84 1 7
HELIX 4 AA4 ASP A 89 LYS A 119 1 31
HELIX 5 AA5 GLU B 58 THR B 88 1 31
HELIX 6 AA6 SER B 141 ASN B 152 1 12
HELIX 7 AA7 ARG B 158 ASP B 167 1 10
HELIX 8 AA8 ASP B 167 ILE B 177 1 11
HELIX 9 AA9 GLU C 58 THR C 88 1 31
HELIX 10 AB1 SER C 141 ASN C 152 1 12
HELIX 11 AB2 TYR C 154 THR C 157 5 4
HELIX 12 AB3 ARG C 158 ASP C 167 1 10
HELIX 13 AB4 ASP C 167 ILE C 177 1 11
SHEET 1 AA1 8 THR B 49 GLN B 52 0
SHEET 2 AA1 8 HIS B 36 PRO B 44 -1 N GLU B 42 O THR B 49
SHEET 3 AA1 8 HIS B 24 LEU B 33 -1 N ALA B 31 O THR B 38
SHEET 4 AA1 8 ARG B 10 ASP B 21 -1 N LEU B 14 O ASN B 30
SHEET 5 AA1 8 LEU B 93 GLU B 102 -1 O LEU B 99 N MET B 13
SHEET 6 AA1 8 HIS B 111 VAL B 118 -1 O GLU B 115 N PHE B 98
SHEET 7 AA1 8 SER B 121 ARG B 127 -1 O VAL B 124 N VAL B 116
SHEET 8 AA1 8 LEU B 132 ALA B 135 -1 O GLN B 134 N SER B 125
SHEET 1 AA2 8 THR C 49 GLN C 52 0
SHEET 2 AA2 8 HIS C 36 PRO C 44 -1 N GLU C 42 O THR C 49
SHEET 3 AA2 8 HIS C 24 LEU C 33 -1 N ALA C 31 O THR C 38
SHEET 4 AA2 8 ARG C 10 ASP C 21 -1 N LEU C 14 O ASN C 30
SHEET 5 AA2 8 LEU C 93 GLU C 102 -1 O LEU C 99 N MET C 13
SHEET 6 AA2 8 HIS C 111 VAL C 118 -1 O GLU C 115 N PHE C 98
SHEET 7 AA2 8 SER C 121 ARG C 127 -1 O VAL C 124 N VAL C 116
SHEET 8 AA2 8 LEU C 132 ALA C 135 -1 O GLN C 134 N SER C 125
SSBOND 1 CYS A 53 CYS A 115 1555 1555 2.04
SSBOND 2 CYS B 101 CYS B 169 1555 1555 2.09
SSBOND 3 CYS C 101 CYS C 169 1555 1555 2.06
LINK ND2 ASN B 30 C1 NAG D 1 1555 1555 1.44
LINK ND2 ASN B 47 C1 NAG E 1 1555 1555 1.43
LINK ND2 ASN B 119 C1 NAG F 1 1555 1555 1.42
LINK ND2 ASN C 30 C1 NAG G 1 1555 1555 1.43
LINK ND2 ASN C 47 C1 NAG C 204 1555 1555 1.44
LINK ND2 ASN C 119 C1 NAG H 1 1555 1555 1.43
LINK ND2 ASN C 155 C1 NAG C 208 1555 1555 1.43
LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44
LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.47
LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44
LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.40
LINK O4 NAG F 2 C1 MAN F 3 1555 1555 1.43
LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44
LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.42
LINK O4 NAG H 2 C1 MAN H 3 1555 1555 1.44
CISPEP 1 PHE B 91 PRO B 92 0 0.80
CISPEP 2 PHE C 91 PRO C 92 0 0.32
CRYST1 112.729 112.729 168.492 90.00 90.00 120.00 P 32 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008871 0.005122 0.000000 0.00000
SCALE2 0.000000 0.010243 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005935 0.00000