HEADER TRANSFERASE 29-AUG-19 6SO4 TITLE FRAGMENT RZ132 IN COMPLEX WITH MAP KINASE P38-ALPHA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 14; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MAPK 14,CRK1,MITOGEN-ACTIVATED PROTEIN KINASE P38 ALPHA,MAP COMPND 5 KINASE P38 ALPHA; COMPND 6 EC: 2.7.11.24; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MAPK14, CRK1, CSBP1, CSBP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FBDD, FRAGMENT BASED DRUG DESIGN, P38, MAPK14, KINASE, TRANSFERASE., KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.E.NICHOLS,G.F.DE NICOLA REVDAT 3 24-JAN-24 6SO4 1 REMARK REVDAT 2 30-SEP-20 6SO4 1 JRNL REVDAT 1 11-SEP-19 6SO4 0 JRNL AUTH C.NICHOLS,J.NG,A.KESHU,G.KELLY,M.R.CONTE,M.S.MARBER, JRNL AUTH 2 F.FRATERNALI,G.F.DE NICOLA JRNL TITL MINING THE PDB FOR TRACTABLE CASES WHERE X-RAY JRNL TITL 2 CRYSTALLOGRAPHY COMBINED WITH FRAGMENT SCREENS CAN BE USED JRNL TITL 3 TO SYSTEMATICALLY DESIGN PROTEIN-PROTEIN INHIBITORS: TWO JRNL TITL 4 TEST CASES ILLUSTRATED BY IL1 BETA-IL1R AND P38 ALPHA-TAB1 JRNL TITL 5 COMPLEXES. JRNL REF J.MED.CHEM. V. 63 7559 2020 JRNL REFN ISSN 0022-2623 JRNL PMID 32543856 JRNL DOI 10.1021/ACS.JMEDCHEM.0C00403 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 78155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 7514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.0700 - 4.6900 0.98 4757 236 0.1813 0.1819 REMARK 3 2 4.6900 - 3.7200 1.00 4795 268 0.1513 0.1560 REMARK 3 3 3.7200 - 3.2500 1.00 4821 248 0.1672 0.1833 REMARK 3 4 3.2500 - 2.9600 0.97 4678 280 0.1884 0.1977 REMARK 3 5 2.9600 - 2.7400 1.00 4774 264 0.1893 0.2134 REMARK 3 6 2.7400 - 2.5800 1.00 4844 241 0.1943 0.1918 REMARK 3 7 2.5800 - 2.4500 1.00 4806 261 0.1905 0.2338 REMARK 3 8 2.4500 - 2.3500 1.00 4758 306 0.1922 0.2097 REMARK 3 9 2.3500 - 2.2600 1.00 4796 244 0.2000 0.2119 REMARK 3 10 2.2600 - 2.1800 0.97 4651 242 0.1910 0.2593 REMARK 3 11 2.1800 - 2.1100 1.00 4848 256 0.1930 0.2036 REMARK 3 12 2.1100 - 2.0500 1.00 4794 274 0.2064 0.2120 REMARK 3 13 2.0500 - 2.0000 0.99 4796 211 0.2093 0.2471 REMARK 3 14 2.0000 - 1.9500 0.98 4760 251 0.2235 0.2545 REMARK 3 15 1.9500 - 1.9000 0.98 4684 256 0.2324 0.2751 REMARK 3 16 1.9000 - 1.8600 0.98 4757 253 0.2379 0.2456 REMARK 3 17 1.8600 - 1.8200 0.97 4586 238 0.2626 0.2842 REMARK 3 18 1.8200 - 1.7900 0.97 4774 276 0.2845 0.3376 REMARK 3 19 1.7900 - 1.7600 0.96 4571 228 0.3136 0.3269 REMARK 3 20 1.7600 - 1.7300 0.94 4600 249 0.3436 0.3775 REMARK 3 21 1.7300 - 1.7000 0.96 4530 282 0.3481 0.3491 REMARK 3 22 1.7000 - 1.6700 0.96 4649 283 0.3600 0.3892 REMARK 3 23 1.6700 - 1.6500 0.96 4615 239 0.3704 0.3608 REMARK 3 24 1.6500 - 1.6300 0.95 4618 197 0.3833 0.4170 REMARK 3 25 1.6300 - 1.6000 0.95 4596 268 0.4003 0.4006 REMARK 3 26 1.6000 - 1.5800 0.95 4541 218 0.4166 0.4033 REMARK 3 27 1.5800 - 1.5600 0.94 4556 236 0.4156 0.4302 REMARK 3 28 1.5600 - 1.5500 0.94 4563 247 0.4395 0.3821 REMARK 3 29 1.5500 - 1.5300 0.95 4552 199 0.4383 0.4719 REMARK 3 30 1.5300 - 1.5100 0.92 4432 263 0.4442 0.4755 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.696 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2829 REMARK 3 ANGLE : 0.776 3856 REMARK 3 CHIRALITY : 0.054 436 REMARK 3 PLANARITY : 0.006 499 REMARK 3 DIHEDRAL : 2.555 2322 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292104041. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 86.320 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SO1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27.5% PEG3350, 0.1M MAGNESIUM REMARK 280 CHLORIDE, 0.1M MAGNESIUM SULPHATE, 0.1M BIS-TRIS PROPANE, 10% REMARK 280 GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.89200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.34950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.16150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.34950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.89200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.16150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 GLN A -9 REMARK 465 ASP A -8 REMARK 465 PRO A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 GLU A 4 REMARK 465 GLY A 33 REMARK 465 LYS A 118 REMARK 465 CYS A 119 REMARK 465 ALA A 172 REMARK 465 ARG A 173 REMARK 465 LEU A 353 REMARK 465 ASP A 354 REMARK 465 GLN A 355 REMARK 465 GLU A 356 REMARK 465 GLU A 357 REMARK 465 MET A 358 REMARK 465 GLU A 359 REMARK 465 SER A 360 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 10 CZ NH1 NH2 REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 ASN A 14 CG OD1 ND2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 TYR A 35 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 45 CE NZ REMARK 470 ARG A 49 CD NE CZ NH1 NH2 REMARK 470 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 67 NE CZ NH1 NH2 REMARK 470 ILE A 84 CD1 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 ILE A 116 CG1 CG2 CD1 REMARK 470 VAL A 117 CG1 CG2 REMARK 470 GLN A 120 OE1 NE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 GLU A 178 OE1 OE2 REMARK 470 ILE A 193 CD1 REMARK 470 LYS A 248 CD CE NZ REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 100 -30.48 -139.31 REMARK 500 ILE A 116 -39.55 -130.76 REMARK 500 ARG A 149 -9.30 79.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 155 OD1 REMARK 620 2 ASP A 168 OD2 92.1 REMARK 620 3 HOH A 501 O 91.5 176.3 REMARK 620 4 HOH A 508 O 93.7 101.4 79.5 REMARK 620 5 HOH A 572 O 90.7 84.2 94.6 172.7 REMARK 620 6 HOH A 672 O 175.4 88.7 87.7 90.5 84.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LO8 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 410 DBREF 6SO4 A 1 360 UNP P47811 MK14_MOUSE 1 360 SEQADV 6SO4 MET A -20 UNP P47811 INITIATING METHIONINE SEQADV 6SO4 GLY A -19 UNP P47811 EXPRESSION TAG SEQADV 6SO4 SER A -18 UNP P47811 EXPRESSION TAG SEQADV 6SO4 SER A -17 UNP P47811 EXPRESSION TAG SEQADV 6SO4 HIS A -16 UNP P47811 EXPRESSION TAG SEQADV 6SO4 HIS A -15 UNP P47811 EXPRESSION TAG SEQADV 6SO4 HIS A -14 UNP P47811 EXPRESSION TAG SEQADV 6SO4 HIS A -13 UNP P47811 EXPRESSION TAG SEQADV 6SO4 HIS A -12 UNP P47811 EXPRESSION TAG SEQADV 6SO4 HIS A -11 UNP P47811 EXPRESSION TAG SEQADV 6SO4 SER A -10 UNP P47811 EXPRESSION TAG SEQADV 6SO4 GLN A -9 UNP P47811 EXPRESSION TAG SEQADV 6SO4 ASP A -8 UNP P47811 EXPRESSION TAG SEQADV 6SO4 PRO A -7 UNP P47811 EXPRESSION TAG SEQADV 6SO4 GLU A -6 UNP P47811 EXPRESSION TAG SEQADV 6SO4 ASN A -5 UNP P47811 EXPRESSION TAG SEQADV 6SO4 LEU A -4 UNP P47811 EXPRESSION TAG SEQADV 6SO4 TYR A -3 UNP P47811 EXPRESSION TAG SEQADV 6SO4 PHE A -2 UNP P47811 EXPRESSION TAG SEQADV 6SO4 GLN A -1 UNP P47811 EXPRESSION TAG SEQADV 6SO4 GLY A 0 UNP P47811 EXPRESSION TAG SEQRES 1 A 381 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 381 PRO GLU ASN LEU TYR PHE GLN GLY MET SER GLN GLU ARG SEQRES 3 A 381 PRO THR PHE TYR ARG GLN GLU LEU ASN LYS THR ILE TRP SEQRES 4 A 381 GLU VAL PRO GLU ARG TYR GLN ASN LEU SER PRO VAL GLY SEQRES 5 A 381 SER GLY ALA TYR GLY SER VAL CYS ALA ALA PHE ASP THR SEQRES 6 A 381 LYS THR GLY HIS ARG VAL ALA VAL LYS LYS LEU SER ARG SEQRES 7 A 381 PRO PHE GLN SER ILE ILE HIS ALA LYS ARG THR TYR ARG SEQRES 8 A 381 GLU LEU ARG LEU LEU LYS HIS MET LYS HIS GLU ASN VAL SEQRES 9 A 381 ILE GLY LEU LEU ASP VAL PHE THR PRO ALA ARG SER LEU SEQRES 10 A 381 GLU GLU PHE ASN ASP VAL TYR LEU VAL THR HIS LEU MET SEQRES 11 A 381 GLY ALA ASP LEU ASN ASN ILE VAL LYS CYS GLN LYS LEU SEQRES 12 A 381 THR ASP ASP HIS VAL GLN PHE LEU ILE TYR GLN ILE LEU SEQRES 13 A 381 ARG GLY LEU LYS TYR ILE HIS SER ALA ASP ILE ILE HIS SEQRES 14 A 381 ARG ASP LEU LYS PRO SER ASN LEU ALA VAL ASN GLU ASP SEQRES 15 A 381 CYS GLU LEU LYS ILE LEU ASP PHE GLY LEU ALA ARG HIS SEQRES 16 A 381 THR ASP ASP GLU MET THR GLY TYR VAL ALA THR ARG TRP SEQRES 17 A 381 TYR ARG ALA PRO GLU ILE MET LEU ASN TRP MET HIS TYR SEQRES 18 A 381 ASN GLN THR VAL ASP ILE TRP SER VAL GLY CYS ILE MET SEQRES 19 A 381 ALA GLU LEU LEU THR GLY ARG THR LEU PHE PRO GLY THR SEQRES 20 A 381 ASP HIS ILE ASP GLN LEU LYS LEU ILE LEU ARG LEU VAL SEQRES 21 A 381 GLY THR PRO GLY ALA GLU LEU LEU LYS LYS ILE SER SER SEQRES 22 A 381 GLU SER ALA ARG ASN TYR ILE GLN SER LEU ALA GLN MET SEQRES 23 A 381 PRO LYS MET ASN PHE ALA ASN VAL PHE ILE GLY ALA ASN SEQRES 24 A 381 PRO LEU ALA VAL ASP LEU LEU GLU LYS MET LEU VAL LEU SEQRES 25 A 381 ASP SER ASP LYS ARG ILE THR ALA ALA GLN ALA LEU ALA SEQRES 26 A 381 HIS ALA TYR PHE ALA GLN TYR HIS ASP PRO ASP ASP GLU SEQRES 27 A 381 PRO VAL ALA ASP PRO TYR ASP GLN SER PHE GLU SER ARG SEQRES 28 A 381 ASP LEU LEU ILE ASP GLU TRP LYS SER LEU THR TYR ASP SEQRES 29 A 381 GLU VAL ILE SER PHE VAL PRO PRO PRO LEU ASP GLN GLU SEQRES 30 A 381 GLU MET GLU SER HET LO8 A 401 21 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET MG A 408 1 HET SO4 A 409 5 HET SO4 A 410 5 HETNAM LO8 (2~{S})-2-METHYL-4-(OXETAN-3-YL)-~{N}-(PHENYLMETHYL) HETNAM 2 LO8 PIPERAZINE-2-CARBOXAMIDE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 2 LO8 C16 H23 N3 O2 FORMUL 3 CL 6(CL 1-) FORMUL 9 MG MG 2+ FORMUL 10 SO4 2(O4 S 2-) FORMUL 12 HOH *278(H2 O) HELIX 1 AA1 SER A 61 MET A 78 1 18 HELIX 2 AA2 SER A 95 PHE A 99 5 5 HELIX 3 AA3 ASN A 114 ILE A 116 5 3 HELIX 4 AA4 THR A 123 ALA A 144 1 22 HELIX 5 AA5 LYS A 152 SER A 154 5 3 HELIX 6 AA6 ASP A 176 THR A 180 5 5 HELIX 7 AA7 VAL A 183 TYR A 188 1 6 HELIX 8 AA8 ALA A 190 LEU A 195 1 6 HELIX 9 AA9 GLN A 202 GLY A 219 1 18 HELIX 10 AB1 ASP A 227 GLY A 240 1 14 HELIX 11 AB2 GLY A 243 LYS A 248 1 6 HELIX 12 AB3 SER A 252 SER A 261 1 10 HELIX 13 AB4 ASN A 269 VAL A 273 5 5 HELIX 14 AB5 ASN A 278 LEU A 289 1 12 HELIX 15 AB6 ASP A 292 ARG A 296 5 5 HELIX 16 AB7 THR A 298 ALA A 304 1 7 HELIX 17 AB8 HIS A 305 ALA A 309 5 5 HELIX 18 AB9 GLN A 325 ARG A 330 5 6 HELIX 19 AC1 LEU A 333 SER A 347 1 15 SHEET 1 AA1 2 PHE A 8 LEU A 13 0 SHEET 2 AA1 2 THR A 16 PRO A 21 -1 O TRP A 18 N GLN A 11 SHEET 1 AA2 5 TYR A 24 GLY A 31 0 SHEET 2 AA2 5 GLY A 36 ASP A 43 -1 O ALA A 40 N SER A 28 SHEET 3 AA2 5 ARG A 49 LEU A 55 -1 O VAL A 52 N CYS A 39 SHEET 4 AA2 5 TYR A 103 HIS A 107 -1 O LEU A 104 N LYS A 53 SHEET 5 AA2 5 ASP A 88 PHE A 90 -1 N ASP A 88 O VAL A 105 SHEET 1 AA3 3 ALA A 111 ASP A 112 0 SHEET 2 AA3 3 LEU A 156 VAL A 158 -1 O VAL A 158 N ALA A 111 SHEET 3 AA3 3 LEU A 164 ILE A 166 -1 O LYS A 165 N ALA A 157 LINK OD1 ASN A 155 MG MG A 408 1555 1555 2.13 LINK OD2 ASP A 168 MG MG A 408 1555 1555 2.11 LINK MG MG A 408 O HOH A 501 1555 1555 1.97 LINK MG MG A 408 O HOH A 508 1555 1555 2.20 LINK MG MG A 408 O HOH A 572 1555 1555 1.99 LINK MG MG A 408 O HOH A 672 1555 1555 2.13 SITE 1 AC1 12 THR A 218 ARG A 220 THR A 221 LEU A 222 SITE 2 AC1 12 ARG A 237 VAL A 273 PHE A 274 ILE A 275 SITE 3 AC1 12 PRO A 322 ASP A 324 HOH A 502 HOH A 581 SITE 1 AC2 6 PRO A 6 GLU A 22 ARG A 23 HOH A 635 SITE 2 AC2 6 HOH A 737 HOH A 774 SITE 1 AC3 5 THR A 91 ALA A 93 GLU A 98 ASN A 100 SITE 2 AC3 5 ASP A 101 SITE 1 AC4 4 GLY A 85 LYS A 165 HOH A 511 HOH A 524 SITE 1 AC5 4 ARG A 73 ARG A 220 ASP A 324 HOH A 583 SITE 1 AC6 3 ASN A 114 SER A 154 HOH A 607 SITE 1 AC7 2 ALA A 263 GLN A 264 SITE 1 AC8 6 ASN A 155 ASP A 168 HOH A 501 HOH A 508 SITE 2 AC8 6 HOH A 572 HOH A 672 SITE 1 AC9 6 ARG A 220 THR A 221 HOH A 503 HOH A 505 SITE 2 AC9 6 HOH A 540 HOH A 657 SITE 1 AD1 5 LYS A 152 HIS A 174 THR A 185 HOH A 501 SITE 2 AD1 5 HOH A 508 CRYST1 45.784 86.323 126.699 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007893 0.00000