HEADER RNA BINDING PROTEIN 29-AUG-19 6SO9 TITLE MOUSE RBM20 RRM DOMAIN IN COMPLEX WITH AUCUUA RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUCUUA; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA-BINDING PROTEIN 20; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: RNA-BINDING MOTIF PROTEIN 20; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 GENE: RBM20; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: DE3; SOURCE 13 EXPRESSION_SYSTEM_VARIANT: LYSY; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET-HIS1A KEYWDS ALTERNATIVE SPLICING, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR C.D.MACKERETH,S.K.UPADHYAY REVDAT 4 15-MAY-24 6SO9 1 JRNL REVDAT 3 13-MAY-20 6SO9 1 JRNL REVDAT 2 01-APR-20 6SO9 1 JRNL REVDAT 1 06-NOV-19 6SO9 0 JRNL AUTH S.K.UPADHYAY,C.D.MACKERETH JRNL TITL STRUCTURAL BASIS OF UCUU RNA MOTIF RECOGNITION BY SPLICING JRNL TITL 2 FACTOR RBM20. JRNL REF NUCLEIC ACIDS RES. V. 48 4538 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32187365 JRNL DOI 10.1093/NAR/GKAA168 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.D.MACKERETH,S.K.UPADHYAY REMARK 1 TITL STRUCTURAL BASIS OF UCUU RNA MOTIF RECOGNITION BY SPLICING REMARK 1 TITL 2 FACTOR RBM20 REMARK 1 REF BIORXIV 2019 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/823351 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA 2.3 REMARK 4 REMARK 4 6SO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104034. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 278 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 70; 70 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 400 UM [U-99% 13C; U-99% 15N] REMARK 210 MOUSE RBM20 RRM DOMAIN, 480 UM REMARK 210 AUCUUA, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 400 UM [U-99% 15N] REMARK 210 MOUSE RBM20 RRM DOMAIN, 480 UM REMARK 210 AUCUUA, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O; 500 UM [U-99% 13C; U-99% REMARK 210 15N] MOUSE RBM20 RRM DOMAIN, REMARK 210 600 UM AUCUUA, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O; 300 UM [U-99% REMARK 210 2H; U-99% 15N] MOUSE RBM20 RRM REMARK 210 DOMAIN, 290 UM AUCUUA, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 100% D2O; 300 UM [U-99% REMARK 210 13C] MOUSE RBM20 RRM DOMAIN, REMARK 210 360 UM AUCUUA, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 100% D2O; 450 UM [U-10% 13C; U- REMARK 210 99% 15N] MOUSE RBM20 RRM DOMAIN, REMARK 210 560 UM AUCUUA, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 90% H2O/10% D2O; 500 UM [U-99% REMARK 210 13C; U-99% 15N] MOUSE RBM20 RRM REMARK 210 DOMAIN, 600 UM AUCUUA, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HN(CA)CO; 3D HNCA; REMARK 210 3D CBCA(CO)NH; 3D HNHA; 3D HCCH- REMARK 210 TOCSY; 2D 1H-13C HSQC CT; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 1H-13C HSQC AROMATIC; 2D 1H-1H REMARK 210 NOESY; 2D 1H-1H TOCSY; 2D X2- REMARK 210 FILTERED 1H-1H NOESY; 3D (H)C(CO) REMARK 210 NH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : NEO; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 514 153.72 72.62 REMARK 500 1 ASN A 526 27.32 87.38 REMARK 500 1 GLN A 618 -75.31 67.07 REMARK 500 2 ASN A 526 28.90 84.64 REMARK 500 2 GLN A 618 163.09 74.57 REMARK 500 3 ALA A 518 53.54 -96.57 REMARK 500 3 ASN A 526 30.18 82.60 REMARK 500 3 GLN A 618 5.86 81.98 REMARK 500 3 ARG A 619 -167.81 58.64 REMARK 500 4 ALA A 511 -68.38 -131.38 REMARK 500 4 MET A 512 127.49 69.96 REMARK 500 4 LYS A 516 48.43 -140.06 REMARK 500 4 ASN A 526 29.95 85.47 REMARK 500 5 MET A 512 88.58 60.81 REMARK 500 5 ALA A 513 76.05 64.09 REMARK 500 5 LYS A 516 35.65 -141.29 REMARK 500 5 ASN A 526 27.94 86.05 REMARK 500 5 SER A 531 11.57 -148.03 REMARK 500 5 MET A 553 79.68 -107.96 REMARK 500 5 GLN A 618 170.24 69.63 REMARK 500 6 ALA A 511 -51.59 71.53 REMARK 500 6 ASN A 526 27.24 86.46 REMARK 500 6 SER A 531 7.68 -153.50 REMARK 500 6 ARG A 619 178.13 62.77 REMARK 500 7 GLN A 514 113.06 67.30 REMARK 500 7 ASN A 526 29.29 84.94 REMARK 500 7 SER A 531 2.40 -156.14 REMARK 500 7 GLU A 620 48.62 -81.05 REMARK 500 8 MET A 512 -46.62 73.14 REMARK 500 8 ALA A 513 32.64 -80.02 REMARK 500 8 ASN A 526 27.38 86.90 REMARK 500 8 SER A 531 6.70 -150.53 REMARK 500 9 MET A 512 -62.05 -132.48 REMARK 500 9 ASN A 526 28.65 86.14 REMARK 500 9 GLN A 618 -43.27 72.55 REMARK 500 10 ALA A 511 -47.55 73.21 REMARK 500 10 ASN A 526 29.58 85.66 REMARK 500 10 GLN A 618 -83.33 66.87 REMARK 500 10 ARG A 619 34.33 -92.87 REMARK 500 10 GLU A 620 63.11 -114.85 REMARK 500 11 GLN A 514 102.14 63.35 REMARK 500 11 ASN A 526 27.08 83.45 REMARK 500 11 SER A 531 9.05 -156.48 REMARK 500 11 GLU A 620 79.94 54.57 REMARK 500 12 ALA A 511 -77.85 66.70 REMARK 500 12 ALA A 518 -43.45 -175.10 REMARK 500 12 ASN A 526 25.98 86.50 REMARK 500 13 GLN A 514 139.72 71.45 REMARK 500 13 ASN A 526 29.61 83.92 REMARK 500 13 LYS A 606 -176.13 76.29 REMARK 500 REMARK 500 THIS ENTRY HAS 102 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34428 RELATED DB: BMRB REMARK 900 MOUSE RBM20 RRM DOMAIN IN COMPLEX WITH AUCUUA RNA DBREF 6SO9 B 1 6 PDB 6SO9 6SO9 1 6 DBREF 6SO9 A 513 621 UNP Q3UQS8 RBM20_MOUSE 513 621 SEQADV 6SO9 GLY A 510 UNP Q3UQS8 EXPRESSION TAG SEQADV 6SO9 ALA A 511 UNP Q3UQS8 EXPRESSION TAG SEQADV 6SO9 MET A 512 UNP Q3UQS8 EXPRESSION TAG SEQRES 1 B 6 ADN U C U U A SEQRES 1 A 112 GLY ALA MET ALA GLN ARG LYS GLY ALA GLY ARG VAL VAL SEQRES 2 A 112 HIS ILE CYS ASN LEU PRO GLU GLY SER CYS THR GLU ASN SEQRES 3 A 112 ASP VAL ILE ASN LEU GLY LEU PRO PHE GLY LYS VAL THR SEQRES 4 A 112 ASN TYR ILE LEU MET LYS SER THR ASN GLN ALA PHE LEU SEQRES 5 A 112 GLU MET ALA TYR THR GLU ALA ALA GLN ALA MET VAL GLN SEQRES 6 A 112 TYR TYR GLN GLU LYS PRO ALA ILE ILE ASN GLY GLU LYS SEQRES 7 A 112 LEU LEU ILE ARG MET SER THR ARG TYR LYS GLU LEU GLN SEQRES 8 A 112 LEU LYS LYS PRO GLY LYS ASN VAL ALA ALA ILE ILE GLN SEQRES 9 A 112 ASP ILE HIS SER GLN ARG GLU ARG HET ADN B 1 31 HETNAM ADN ADENOSINE FORMUL 1 ADN C10 H13 N5 O4 HELIX 1 AA1 THR A 533 GLY A 545 1 13 HELIX 2 AA2 TYR A 565 LYS A 579 1 15 HELIX 3 AA3 ASN A 607 GLN A 618 1 12 SHEET 1 AA1 5 VAL A 547 MET A 553 0 SHEET 2 AA1 5 GLN A 558 MET A 563 -1 O PHE A 560 N ILE A 551 SHEET 3 AA1 5 VAL A 522 CYS A 525 -1 N ILE A 524 O ALA A 559 SHEET 4 AA1 5 GLU A 586 MET A 592 -1 O ARG A 591 N HIS A 523 SHEET 5 AA1 5 ALA A 581 ILE A 583 -1 N ALA A 581 O LEU A 588 LINK O3' ADN B 1 P U B 2 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 HETATM 1 O5' ADN B 1 8.381 -2.093 -8.756 1.00 3.64 O HETATM 2 C5' ADN B 1 7.784 -0.921 -9.316 1.00 3.04 C HETATM 3 C4' ADN B 1 8.727 0.260 -9.271 1.00 2.61 C HETATM 4 O4' ADN B 1 9.801 -0.035 -8.337 1.00 3.25 O HETATM 5 C3' ADN B 1 9.414 0.600 -10.590 1.00 2.05 C HETATM 6 O3' ADN B 1 9.615 2.004 -10.716 1.00 2.33 O HETATM 7 C2' ADN B 1 10.736 -0.156 -10.505 1.00 2.68 C HETATM 8 O2' ADN B 1 11.762 0.480 -11.239 1.00 3.28 O HETATM 9 C1' ADN B 1 11.042 -0.043 -9.014 1.00 3.33 C HETATM 10 N9 ADN B 1 11.847 -1.150 -8.505 1.00 4.21 N HETATM 11 C8 ADN B 1 11.410 -2.388 -8.124 1.00 4.58 C HETATM 12 N7 ADN B 1 12.367 -3.193 -7.730 1.00 5.53 N HETATM 13 C5 ADN B 1 13.517 -2.424 -7.861 1.00 5.90 C HETATM 14 C6 ADN B 1 14.871 -2.698 -7.604 1.00 7.05 C HETATM 15 N6 ADN B 1 15.314 -3.869 -7.143 1.00 7.92 N HETATM 16 N1 ADN B 1 15.766 -1.714 -7.839 1.00 7.44 N HETATM 17 C2 ADN B 1 15.320 -0.538 -8.302 1.00 6.72 C HETATM 18 N3 ADN B 1 14.074 -0.162 -8.582 1.00 5.56 N HETATM 19 C4 ADN B 1 13.211 -1.162 -8.338 1.00 5.16 C HETATM 20 HO5' ADN B 1 8.891 -2.513 -9.454 1.00 3.97 H HETATM 21 H5'1 ADN B 1 6.880 -0.675 -8.760 1.00 3.50 H HETATM 22 H5'2 ADN B 1 7.513 -1.111 -10.353 1.00 3.15 H HETATM 23 H4' ADN B 1 8.139 1.134 -8.992 1.00 3.01 H HETATM 24 H3' ADN B 1 8.813 0.300 -11.448 1.00 2.07 H HETATM 25 H2' ADN B 1 10.595 -1.196 -10.801 1.00 2.94 H HETATM 26 HO2' ADN B 1 12.429 0.757 -10.609 1.00 3.62 H HETATM 27 H1' ADN B 1 11.549 0.884 -8.762 1.00 3.79 H HETATM 28 H8 ADN B 1 10.369 -2.666 -8.139 1.00 4.34 H HETATM 29 HN61 ADN B 1 14.663 -4.620 -6.962 1.00 7.80 H HETATM 30 HN62 ADN B 1 16.301 -4.005 -6.974 1.00 8.76 H HETATM 31 H2 ADN B 1 16.087 0.218 -8.472 1.00 7.26 H