HEADER RNA BINDING PROTEIN 29-AUG-19 6SOE TITLE MOUSE RBM20 RRM DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-BINDING PROTEIN 20; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-BINDING MOTIF PROTEIN 20; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RBM20; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: LYSY; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-HIS1A KEYWDS ALTERNATIVE SPLICING, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR C.D.MACKERETH,S.K.UPADHYAY REVDAT 5 19-JUN-24 6SOE 1 REMARK REVDAT 4 14-JUN-23 6SOE 1 JRNL REVDAT 3 13-MAY-20 6SOE 1 JRNL REVDAT 2 01-APR-20 6SOE 1 JRNL REVDAT 1 06-NOV-19 6SOE 0 JRNL AUTH S.K.UPADHYAY,C.D.MACKERETH JRNL TITL STRUCTURAL BASIS OF UCUU RNA MOTIF RECOGNITION BY SPLICING JRNL TITL 2 FACTOR RBM20. JRNL REF NUCLEIC ACIDS RES. V. 48 4538 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32187365 JRNL DOI 10.1093/NAR/GKAA168 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.D.MACKERETH,S.K.UPADHYAY REMARK 1 TITL STRUCTURAL BASIS OF UCUU RNA MOTIF RECOGNITION BY SPLICING REMARK 1 TITL 2 FACTOR RBM20 REMARK 1 REF BIORXIV 2019 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/823351 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA 2.3 REMARK 4 REMARK 4 6SOE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1292104048. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 400 UM [U-99% 13C; U-99% 15N] REMARK 210 MOUSE RBM20 RRM DOMAIN, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 90% H2O/10% REMARK 210 D2O; 500 UM MOUSE RBM20 RRM REMARK 210 DOMAIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 2 MM DTT, REMARK 210 90% H2O/10% D2O; 170 UM [U-99% REMARK 210 13C] MOUSE RBM20 RRM DOMAIN, 20 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 100% REMARK 210 D2O; 100 UM [U-10% 13C; U-99% REMARK 210 15N] MOUSE RBM20 RRM DOMAIN, 20 REMARK 210 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HNCA; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D H(C)(CO)NH-TOCSY; REMARK 210 3D (H)C(CO)NH-TOCSY; 3D HCCH- REMARK 210 TOCSY; 2D 1H-13C HSQC CT; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 575 H LYS A 579 1.56 REMARK 500 O ASP A 614 HG SER A 617 1.58 REMARK 500 HG1 THR A 533 OD2 ASP A 536 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 513 -174.61 61.29 REMARK 500 1 ALA A 518 -78.92 -150.73 REMARK 500 1 VAL A 608 -58.35 71.38 REMARK 500 1 GLN A 613 76.86 -100.58 REMARK 500 1 ASP A 614 136.65 175.50 REMARK 500 1 SER A 617 -63.49 -104.69 REMARK 500 1 GLN A 618 91.24 63.01 REMARK 500 1 ARG A 619 131.33 74.67 REMARK 500 2 ALA A 511 -71.78 -56.89 REMARK 500 2 ARG A 515 -35.42 74.21 REMARK 500 2 ALA A 518 -69.47 -173.03 REMARK 500 2 LYS A 606 -71.76 71.21 REMARK 500 2 ALA A 609 -47.12 -138.79 REMARK 500 2 ALA A 610 105.35 -162.76 REMARK 500 2 ASP A 614 -77.34 -70.24 REMARK 500 2 ILE A 615 -70.31 -101.12 REMARK 500 2 HIS A 616 -55.45 -134.64 REMARK 500 2 GLN A 618 -75.69 -81.17 REMARK 500 3 GLN A 514 111.66 72.75 REMARK 500 3 ALA A 518 -73.00 -154.72 REMARK 500 3 PRO A 604 88.39 -65.21 REMARK 500 3 ALA A 610 113.54 -165.17 REMARK 500 3 GLN A 613 -43.98 -145.62 REMARK 500 3 SER A 617 -59.12 74.24 REMARK 500 3 ARG A 619 -171.99 64.99 REMARK 500 4 ALA A 518 -82.53 -81.68 REMARK 500 4 GLN A 600 74.42 48.74 REMARK 500 4 ALA A 610 127.26 67.41 REMARK 500 4 ASP A 614 -61.74 -105.57 REMARK 500 4 SER A 617 34.64 175.99 REMARK 500 4 GLU A 620 79.27 51.90 REMARK 500 5 ARG A 515 -26.54 71.27 REMARK 500 5 ALA A 518 -78.20 -152.05 REMARK 500 5 LEU A 599 -65.20 -92.69 REMARK 500 5 GLN A 600 79.98 51.82 REMARK 500 5 ALA A 610 109.34 69.46 REMARK 500 5 ASP A 614 -62.65 -95.02 REMARK 500 5 GLU A 620 171.28 69.78 REMARK 500 6 ALA A 511 86.35 -154.82 REMARK 500 6 MET A 512 48.19 -84.23 REMARK 500 6 ARG A 515 -76.65 64.29 REMARK 500 6 LYS A 516 -99.54 44.51 REMARK 500 6 ALA A 518 -39.79 174.75 REMARK 500 6 LEU A 599 -62.20 -95.13 REMARK 500 6 GLN A 600 86.58 42.81 REMARK 500 6 VAL A 608 -78.26 -121.71 REMARK 500 6 ALA A 609 -54.28 -155.00 REMARK 500 6 GLN A 618 -179.37 64.39 REMARK 500 7 LEU A 601 41.01 -97.50 REMARK 500 7 LYS A 602 55.33 -155.21 REMARK 500 REMARK 500 THIS ENTRY HAS 198 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34429 RELATED DB: BMRB REMARK 900 MOUSE RBM20 RRM DOMAIN DBREF 6SOE A 513 621 UNP Q3UQS8 RBM20_MOUSE 513 621 SEQADV 6SOE GLY A 510 UNP Q3UQS8 EXPRESSION TAG SEQADV 6SOE ALA A 511 UNP Q3UQS8 EXPRESSION TAG SEQADV 6SOE MET A 512 UNP Q3UQS8 EXPRESSION TAG SEQRES 1 A 112 GLY ALA MET ALA GLN ARG LYS GLY ALA GLY ARG VAL VAL SEQRES 2 A 112 HIS ILE CYS ASN LEU PRO GLU GLY SER CYS THR GLU ASN SEQRES 3 A 112 ASP VAL ILE ASN LEU GLY LEU PRO PHE GLY LYS VAL THR SEQRES 4 A 112 ASN TYR ILE LEU MET LYS SER THR ASN GLN ALA PHE LEU SEQRES 5 A 112 GLU MET ALA TYR THR GLU ALA ALA GLN ALA MET VAL GLN SEQRES 6 A 112 TYR TYR GLN GLU LYS PRO ALA ILE ILE ASN GLY GLU LYS SEQRES 7 A 112 LEU LEU ILE ARG MET SER THR ARG TYR LYS GLU LEU GLN SEQRES 8 A 112 LEU LYS LYS PRO GLY LYS ASN VAL ALA ALA ILE ILE GLN SEQRES 9 A 112 ASP ILE HIS SER GLN ARG GLU ARG HELIX 1 AA1 THR A 533 LEU A 542 1 10 HELIX 2 AA2 LYS A 554 ASN A 557 5 4 HELIX 3 AA3 TYR A 565 LYS A 579 1 15 SHEET 1 AA1 4 VAL A 547 MET A 553 0 SHEET 2 AA1 4 GLN A 558 MET A 563 -1 O GLU A 562 N ASN A 549 SHEET 3 AA1 4 ARG A 520 ILE A 524 -1 N VAL A 522 O LEU A 561 SHEET 4 AA1 4 ILE A 590 MET A 592 -1 O ARG A 591 N HIS A 523 SHEET 1 AA2 2 ALA A 581 ILE A 583 0 SHEET 2 AA2 2 GLU A 586 LEU A 588 -1 O LEU A 588 N ALA A 581 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1