HEADER VIRAL PROTEIN 04-SEP-19 6SQJ TITLE CRYSTAL STRUCTURE OF GLYCOPROTEIN D OF EQUINE HERPESVIRUS TYPE 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN D; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EQUID ALPHAHERPESVIRUS 1; SOURCE 3 ORGANISM_COMMON: EQUINE HERPESVIRUS 1; SOURCE 4 ORGANISM_TAXID: 10326; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: H5; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMULTIBACY KEYWDS GLYCOPROTEIN D; EQUINE HERPESVIRUS TYPE 1; VIRAL ENTRY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR V.KREMLING,B.LOLL,W.AZAB,N.OSTERRIEDER,I.DAHMANI,P.CHIANTIA,M.WAHL REVDAT 4 13-NOV-24 6SQJ 1 REMARK REVDAT 3 07-FEB-24 6SQJ 1 REMARK REVDAT 2 14-JUN-23 6SQJ 1 JRNL REVDAT 1 30-SEP-20 6SQJ 0 JRNL AUTH V.KREMLING,B.LOLL,S.PACH,I.DAHMANI,C.WEISE,G.WOLBER, JRNL AUTH 2 S.CHIANTIA,M.C.WAHL,N.OSTERRIEDER,W.AZAB JRNL TITL CRYSTAL STRUCTURES OF GLYCOPROTEIN D OF EQUINE JRNL TITL 2 ALPHAHERPESVIRUSES REVEAL POTENTIAL BINDING SITES TO THE JRNL TITL 3 ENTRY RECEPTOR MHC-I. JRNL REF FRONT MICROBIOL V. 14 97120 2023 JRNL REFN ESSN 1664-302X JRNL PMID 37250020 JRNL DOI 10.3389/FMICB.2023.1197120 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 33379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8000 - 5.1372 1.00 2821 148 0.1805 0.2222 REMARK 3 2 5.1372 - 4.0782 1.00 2718 143 0.1451 0.1767 REMARK 3 3 4.0782 - 3.5628 1.00 2682 141 0.1772 0.2604 REMARK 3 4 3.5628 - 3.2371 1.00 2664 140 0.2024 0.2503 REMARK 3 5 3.2371 - 3.0052 1.00 2645 140 0.2327 0.3023 REMARK 3 6 3.0052 - 2.8280 1.00 2630 138 0.2362 0.3232 REMARK 3 7 2.8280 - 2.6864 1.00 2645 139 0.2405 0.3075 REMARK 3 8 2.6864 - 2.5694 1.00 2620 138 0.2635 0.3217 REMARK 3 9 2.5694 - 2.4705 1.00 2611 138 0.2855 0.3418 REMARK 3 10 2.4705 - 2.3853 1.00 2634 138 0.2868 0.3922 REMARK 3 11 2.3853 - 2.3107 0.99 2585 136 0.3170 0.3493 REMARK 3 12 2.3107 - 2.2500 0.94 2455 130 0.3430 0.3549 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33402 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2C36 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS BUFFER, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 30% (W/V) PEG 4000, PH 8.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.93000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.64800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.23200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.64800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.93000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.23200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 31 REMARK 465 LYS A 32 REMARK 465 ALA A 33 REMARK 465 LYS A 34 REMARK 465 ARG A 35 REMARK 465 ALA A 36 REMARK 465 VAL A 37 REMARK 465 ARG A 38 REMARK 465 ASN A 71 REMARK 465 ASP A 72 REMARK 465 GLN A 73 REMARK 465 VAL A 74 REMARK 465 LYS A 75 REMARK 465 ASN A 76 REMARK 465 PRO A 281 REMARK 465 ASP A 282 REMARK 465 ASN A 283 REMARK 465 HIS A 284 REMARK 465 PRO A 285 REMARK 465 GLY A 286 REMARK 465 PHE A 287 REMARK 465 ASP A 288 REMARK 465 SER A 289 REMARK 465 VAL A 290 REMARK 465 GLU A 291 REMARK 465 SER A 292 REMARK 465 GLU A 293 REMARK 465 ILE A 294 REMARK 465 THR A 295 REMARK 465 GLN A 296 REMARK 465 ASN A 297 REMARK 465 LYS A 298 REMARK 465 THR A 299 REMARK 465 ASP A 300 REMARK 465 PRO A 301 REMARK 465 LYS A 302 REMARK 465 PRO A 303 REMARK 465 GLY A 304 REMARK 465 GLN A 305 REMARK 465 ALA A 306 REMARK 465 ASP A 307 REMARK 465 PRO A 308 REMARK 465 LYS A 309 REMARK 465 PRO A 310 REMARK 465 ASN A 311 REMARK 465 GLN A 312 REMARK 465 PRO A 313 REMARK 465 PHE A 314 REMARK 465 LYS A 315 REMARK 465 TRP A 316 REMARK 465 PRO A 317 REMARK 465 SER A 318 REMARK 465 ILE A 319 REMARK 465 LYS A 320 REMARK 465 HIS A 321 REMARK 465 LEU A 322 REMARK 465 ALA A 323 REMARK 465 PRO A 324 REMARK 465 ARG A 325 REMARK 465 LEU A 326 REMARK 465 ASP A 327 REMARK 465 GLU A 328 REMARK 465 VAL A 329 REMARK 465 ASP A 330 REMARK 465 GLU A 331 REMARK 465 VAL A 332 REMARK 465 ILE A 333 REMARK 465 GLU A 334 REMARK 465 PRO A 335 REMARK 465 VAL A 336 REMARK 465 THR A 337 REMARK 465 LYS A 338 REMARK 465 PRO A 339 REMARK 465 PRO A 340 REMARK 465 LYS A 341 REMARK 465 THR A 342 REMARK 465 SER A 343 REMARK 465 LYS A 344 REMARK 465 SER A 345 REMARK 465 ASN A 346 REMARK 465 SER A 347 REMARK 465 THR A 348 REMARK 465 PHE A 349 REMARK 465 GLU A 350 REMARK 465 ASN A 351 REMARK 465 LEU A 352 REMARK 465 TYR A 353 REMARK 465 PHE A 354 REMARK 465 GLN A 355 REMARK 465 GLY A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 465 HIS A 361 REMARK 465 HIS A 362 REMARK 465 GLU B 31 REMARK 465 LYS B 32 REMARK 465 ALA B 33 REMARK 465 LYS B 34 REMARK 465 ARG B 35 REMARK 465 ALA B 36 REMARK 465 VAL B 37 REMARK 465 ARG B 38 REMARK 465 GLY B 39 REMARK 465 ARG B 40 REMARK 465 ARG B 277 REMARK 465 PRO B 278 REMARK 465 VAL B 279 REMARK 465 PRO B 280 REMARK 465 PRO B 281 REMARK 465 ASP B 282 REMARK 465 ASN B 283 REMARK 465 HIS B 284 REMARK 465 PRO B 285 REMARK 465 GLY B 286 REMARK 465 PHE B 287 REMARK 465 ASP B 288 REMARK 465 SER B 289 REMARK 465 VAL B 290 REMARK 465 GLU B 291 REMARK 465 SER B 292 REMARK 465 GLU B 293 REMARK 465 ILE B 294 REMARK 465 THR B 295 REMARK 465 GLN B 296 REMARK 465 ASN B 297 REMARK 465 LYS B 298 REMARK 465 THR B 299 REMARK 465 ASP B 300 REMARK 465 PRO B 301 REMARK 465 LYS B 302 REMARK 465 PRO B 303 REMARK 465 GLY B 304 REMARK 465 GLN B 305 REMARK 465 ALA B 306 REMARK 465 ASP B 307 REMARK 465 PRO B 308 REMARK 465 LYS B 309 REMARK 465 PRO B 310 REMARK 465 ASN B 311 REMARK 465 GLN B 312 REMARK 465 PRO B 313 REMARK 465 PHE B 314 REMARK 465 LYS B 315 REMARK 465 TRP B 316 REMARK 465 PRO B 317 REMARK 465 SER B 318 REMARK 465 ILE B 319 REMARK 465 LYS B 320 REMARK 465 HIS B 321 REMARK 465 LEU B 322 REMARK 465 ALA B 323 REMARK 465 PRO B 324 REMARK 465 ARG B 325 REMARK 465 LEU B 326 REMARK 465 ASP B 327 REMARK 465 GLU B 328 REMARK 465 VAL B 329 REMARK 465 ASP B 330 REMARK 465 GLU B 331 REMARK 465 VAL B 332 REMARK 465 ILE B 333 REMARK 465 GLU B 334 REMARK 465 PRO B 335 REMARK 465 VAL B 336 REMARK 465 THR B 337 REMARK 465 LYS B 338 REMARK 465 PRO B 339 REMARK 465 PRO B 340 REMARK 465 LYS B 341 REMARK 465 THR B 342 REMARK 465 SER B 343 REMARK 465 LYS B 344 REMARK 465 SER B 345 REMARK 465 ASN B 346 REMARK 465 SER B 347 REMARK 465 THR B 348 REMARK 465 PHE B 349 REMARK 465 GLU B 350 REMARK 465 ASN B 351 REMARK 465 LEU B 352 REMARK 465 TYR B 353 REMARK 465 PHE B 354 REMARK 465 GLN B 355 REMARK 465 GLY B 356 REMARK 465 HIS B 357 REMARK 465 HIS B 358 REMARK 465 HIS B 359 REMARK 465 HIS B 360 REMARK 465 HIS B 361 REMARK 465 HIS B 362 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 52 OD1 ASP A 148 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 176 59.57 37.09 REMARK 500 ARG A 231 4.13 -65.97 REMARK 500 ILE B 70 72.89 -103.64 REMARK 500 GLN B 73 55.95 -105.42 REMARK 500 GLU B 169 -1.05 67.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 546 DISTANCE = 7.36 ANGSTROMS REMARK 525 HOH A 547 DISTANCE = 8.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 242 OE1 REMARK 620 2 GLU A 242 OE2 53.3 REMARK 620 3 HOH A 514 O 80.0 96.9 REMARK 620 4 ASP B 261 OD1 158.6 132.1 78.7 REMARK 620 5 ASP B 261 OD2 129.8 165.6 97.5 51.6 REMARK 620 6 HOH B 502 O 66.6 118.5 83.7 108.5 63.3 REMARK 620 7 HOH B 505 O 122.9 72.0 92.6 60.7 107.3 169.2 REMARK 620 8 HOH B 542 O 85.7 89.9 155.8 113.4 76.9 72.6 111.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 261 OD2 REMARK 620 2 HOH A 533 O 80.0 REMARK 620 3 GLU B 242 OE1 159.9 113.3 REMARK 620 4 GLU B 242 OE2 140.6 93.4 56.7 REMARK 620 5 HOH B 528 O 80.1 145.4 80.8 119.6 REMARK 620 6 HOH B 540 O 93.9 74.4 76.3 121.9 79.1 REMARK 620 N 1 2 3 4 5 DBREF 6SQJ A 31 349 UNP G9HV37 G9HV37_9ALPH 18 336 DBREF 6SQJ B 31 349 UNP G9HV37 G9HV37_9ALPH 18 336 SEQADV 6SQJ GLU A 350 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ ASN A 351 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ LEU A 352 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ TYR A 353 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ PHE A 354 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ GLN A 355 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ GLY A 356 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS A 357 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS A 358 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS A 359 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS A 360 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS A 361 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS A 362 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ GLU B 350 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ ASN B 351 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ LEU B 352 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ TYR B 353 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ PHE B 354 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ GLN B 355 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ GLY B 356 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS B 357 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS B 358 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS B 359 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS B 360 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS B 361 UNP G9HV37 EXPRESSION TAG SEQADV 6SQJ HIS B 362 UNP G9HV37 EXPRESSION TAG SEQRES 1 A 332 GLU LYS ALA LYS ARG ALA VAL ARG GLY ARG GLN ASP ARG SEQRES 2 A 332 PRO LYS GLU PHE PRO PRO PRO ARG TYR ASN TYR THR ILE SEQRES 3 A 332 LEU THR ARG TYR ASN ALA THR ALA LEU ALA SER PRO PHE SEQRES 4 A 332 ILE ASN ASP GLN VAL LYS ASN VAL ASP LEU ARG ILE VAL SEQRES 5 A 332 THR ALA THR ARG PRO CYS GLU MET ILE ALA LEU ILE ALA SEQRES 6 A 332 LYS THR ASN ILE ASP SER ILE LEU LYS GLU LEU ALA ALA SEQRES 7 A 332 ALA GLN LYS THR TYR SER ALA ARG LEU THR TRP PHE LYS SEQRES 8 A 332 ILE MET PRO THR CYS ALA THR PRO ILE HIS ASP VAL SER SEQRES 9 A 332 TYR MET LYS CYS ASN PRO LYS LEU SER PHE ALA MET CYS SEQRES 10 A 332 ASP GLU ARG SER ASP ILE LEU TRP GLN ALA SER LEU ILE SEQRES 11 A 332 THR MET ALA ALA GLU THR ASP ASP GLU LEU GLY LEU VAL SEQRES 12 A 332 LEU ALA ALA PRO ALA HIS SER ALA SER GLY LEU TYR ARG SEQRES 13 A 332 ARG VAL ILE GLU ILE ASP GLY ARG ARG ILE TYR THR ASP SEQRES 14 A 332 PHE SER VAL THR ILE PRO SER GLU ARG CYS PRO ILE ALA SEQRES 15 A 332 PHE GLU GLN ASN PHE GLY ASN PRO ASP ARG CYS LYS THR SEQRES 16 A 332 PRO GLU GLN TYR SER ARG GLY GLU VAL PHE THR ARG ARG SEQRES 17 A 332 PHE LEU GLY GLU PHE ASN PHE PRO GLN GLY GLU HIS MET SEQRES 18 A 332 THR TRP LEU LYS PHE TRP PHE VAL TYR ASP GLY GLY ASN SEQRES 19 A 332 LEU PRO VAL GLN PHE TYR GLU ALA GLN ALA PHE ALA ARG SEQRES 20 A 332 PRO VAL PRO PRO ASP ASN HIS PRO GLY PHE ASP SER VAL SEQRES 21 A 332 GLU SER GLU ILE THR GLN ASN LYS THR ASP PRO LYS PRO SEQRES 22 A 332 GLY GLN ALA ASP PRO LYS PRO ASN GLN PRO PHE LYS TRP SEQRES 23 A 332 PRO SER ILE LYS HIS LEU ALA PRO ARG LEU ASP GLU VAL SEQRES 24 A 332 ASP GLU VAL ILE GLU PRO VAL THR LYS PRO PRO LYS THR SEQRES 25 A 332 SER LYS SER ASN SER THR PHE GLU ASN LEU TYR PHE GLN SEQRES 26 A 332 GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 332 GLU LYS ALA LYS ARG ALA VAL ARG GLY ARG GLN ASP ARG SEQRES 2 B 332 PRO LYS GLU PHE PRO PRO PRO ARG TYR ASN TYR THR ILE SEQRES 3 B 332 LEU THR ARG TYR ASN ALA THR ALA LEU ALA SER PRO PHE SEQRES 4 B 332 ILE ASN ASP GLN VAL LYS ASN VAL ASP LEU ARG ILE VAL SEQRES 5 B 332 THR ALA THR ARG PRO CYS GLU MET ILE ALA LEU ILE ALA SEQRES 6 B 332 LYS THR ASN ILE ASP SER ILE LEU LYS GLU LEU ALA ALA SEQRES 7 B 332 ALA GLN LYS THR TYR SER ALA ARG LEU THR TRP PHE LYS SEQRES 8 B 332 ILE MET PRO THR CYS ALA THR PRO ILE HIS ASP VAL SER SEQRES 9 B 332 TYR MET LYS CYS ASN PRO LYS LEU SER PHE ALA MET CYS SEQRES 10 B 332 ASP GLU ARG SER ASP ILE LEU TRP GLN ALA SER LEU ILE SEQRES 11 B 332 THR MET ALA ALA GLU THR ASP ASP GLU LEU GLY LEU VAL SEQRES 12 B 332 LEU ALA ALA PRO ALA HIS SER ALA SER GLY LEU TYR ARG SEQRES 13 B 332 ARG VAL ILE GLU ILE ASP GLY ARG ARG ILE TYR THR ASP SEQRES 14 B 332 PHE SER VAL THR ILE PRO SER GLU ARG CYS PRO ILE ALA SEQRES 15 B 332 PHE GLU GLN ASN PHE GLY ASN PRO ASP ARG CYS LYS THR SEQRES 16 B 332 PRO GLU GLN TYR SER ARG GLY GLU VAL PHE THR ARG ARG SEQRES 17 B 332 PHE LEU GLY GLU PHE ASN PHE PRO GLN GLY GLU HIS MET SEQRES 18 B 332 THR TRP LEU LYS PHE TRP PHE VAL TYR ASP GLY GLY ASN SEQRES 19 B 332 LEU PRO VAL GLN PHE TYR GLU ALA GLN ALA PHE ALA ARG SEQRES 20 B 332 PRO VAL PRO PRO ASP ASN HIS PRO GLY PHE ASP SER VAL SEQRES 21 B 332 GLU SER GLU ILE THR GLN ASN LYS THR ASP PRO LYS PRO SEQRES 22 B 332 GLY GLN ALA ASP PRO LYS PRO ASN GLN PRO PHE LYS TRP SEQRES 23 B 332 PRO SER ILE LYS HIS LEU ALA PRO ARG LEU ASP GLU VAL SEQRES 24 B 332 ASP GLU VAL ILE GLU PRO VAL THR LYS PRO PRO LYS THR SEQRES 25 B 332 SER LYS SER ASN SER THR PHE GLU ASN LEU TYR PHE GLN SEQRES 26 B 332 GLY HIS HIS HIS HIS HIS HIS HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET MG A 403 1 HET MG A 404 1 HET NAG B 401 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 5 MG 2(MG 2+) FORMUL 8 HOH *132(H2 O) HELIX 1 AA1 ILE A 99 ALA A 109 1 11 HELIX 2 AA2 ALA A 157 THR A 161 5 5 HELIX 3 AA3 ALA A 178 SER A 182 5 5 HELIX 4 AA4 THR A 225 ARG A 231 1 7 HELIX 5 AA5 PHE A 235 LEU A 240 1 6 HELIX 6 AA6 PRO A 246 ASP A 261 1 16 HELIX 7 AA7 ASN B 98 ALA B 109 1 12 HELIX 8 AA8 ALA B 157 ILE B 160 5 4 HELIX 9 AA9 ALA B 178 SER B 182 5 5 HELIX 10 AB1 THR B 225 ARG B 231 1 7 HELIX 11 AB2 PHE B 235 LEU B 240 1 6 HELIX 12 AB3 PRO B 246 ASP B 261 1 16 SHEET 1 AA1 5 THR A 55 ILE A 56 0 SHEET 2 AA1 5 CYS A 147 ARG A 150 1 O ASP A 148 N THR A 55 SHEET 3 AA1 5 ALA A 127 CYS A 138 -1 N LYS A 137 O ASP A 148 SHEET 4 AA1 5 LEU A 154 TRP A 155 -1 O LEU A 154 N ASP A 132 SHEET 5 AA1 5 GLY A 241 GLU A 242 -1 O GLY A 241 N TRP A 155 SHEET 1 AA2 8 THR A 55 ILE A 56 0 SHEET 2 AA2 8 CYS A 147 ARG A 150 1 O ASP A 148 N THR A 55 SHEET 3 AA2 8 ALA A 127 CYS A 138 -1 N LYS A 137 O ASP A 148 SHEET 4 AA2 8 TYR A 113 ILE A 122 -1 N ALA A 115 O TYR A 135 SHEET 5 AA2 8 GLY A 183 ILE A 191 -1 O GLU A 190 N ARG A 116 SHEET 6 AA2 8 ARG A 194 THR A 203 -1 O THR A 198 N ARG A 187 SHEET 7 AA2 8 ASP A 78 THR A 83 1 N ASP A 78 O ASP A 199 SHEET 8 AA2 8 GLN A 273 ALA A 274 -1 O GLN A 273 N ILE A 81 SHEET 1 AA3 3 MET A 90 LEU A 93 0 SHEET 2 AA3 3 LEU A 172 ALA A 175 -1 O LEU A 172 N LEU A 93 SHEET 3 AA3 3 ALA A 163 GLU A 165 -1 N ALA A 164 O VAL A 173 SHEET 1 AA4 5 THR B 55 ILE B 56 0 SHEET 2 AA4 5 CYS B 147 ARG B 150 1 O ASP B 148 N THR B 55 SHEET 3 AA4 5 ALA B 127 CYS B 138 -1 N MET B 136 O GLU B 149 SHEET 4 AA4 5 LEU B 154 TRP B 155 -1 O LEU B 154 N ASP B 132 SHEET 5 AA4 5 GLY B 241 GLU B 242 -1 O GLY B 241 N TRP B 155 SHEET 1 AA5 8 THR B 55 ILE B 56 0 SHEET 2 AA5 8 CYS B 147 ARG B 150 1 O ASP B 148 N THR B 55 SHEET 3 AA5 8 ALA B 127 CYS B 138 -1 N MET B 136 O GLU B 149 SHEET 4 AA5 8 TYR B 113 ILE B 122 -1 N ALA B 115 O TYR B 135 SHEET 5 AA5 8 GLY B 183 ILE B 191 -1 O VAL B 188 N THR B 118 SHEET 6 AA5 8 ARG B 194 THR B 203 -1 O THR B 198 N ARG B 187 SHEET 7 AA5 8 ASP B 78 THR B 83 1 N ASP B 78 O ASP B 199 SHEET 8 AA5 8 GLN B 273 ALA B 274 -1 O GLN B 273 N ILE B 81 SHEET 1 AA6 3 MET B 90 LEU B 93 0 SHEET 2 AA6 3 LEU B 172 ALA B 175 -1 O LEU B 172 N LEU B 93 SHEET 3 AA6 3 ALA B 163 GLU B 165 -1 N ALA B 164 O VAL B 173 SSBOND 1 CYS A 88 CYS A 209 1555 1555 2.09 SSBOND 2 CYS A 126 CYS A 223 1555 1555 2.07 SSBOND 3 CYS A 138 CYS A 147 1555 1555 2.06 SSBOND 4 CYS B 88 CYS B 209 1555 1555 2.11 SSBOND 5 CYS B 126 CYS B 223 1555 1555 2.05 SSBOND 6 CYS B 138 CYS B 147 1555 1555 2.07 LINK ND2 ASN A 53 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN B 53 C1 NAG B 401 1555 1555 1.44 LINK ND2 ASN B 61 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK OE1 GLU A 242 MG MG A 403 1555 1555 2.36 LINK OE2 GLU A 242 MG MG A 403 1555 1555 2.51 LINK OD2 ASP A 261 MG MG A 404 1555 1555 2.37 LINK MG MG A 403 O HOH A 514 1555 1555 1.96 LINK MG MG A 403 OD1 ASP B 261 1555 1555 2.69 LINK MG MG A 403 OD2 ASP B 261 1555 1555 2.22 LINK MG MG A 403 O HOH B 502 1555 1555 2.27 LINK MG MG A 403 O HOH B 505 1555 1555 2.30 LINK MG MG A 403 O HOH B 542 1555 1555 2.30 LINK MG MG A 404 O HOH A 533 1555 1555 2.36 LINK MG MG A 404 OE1 GLU B 242 1555 1555 2.27 LINK MG MG A 404 OE2 GLU B 242 1555 1555 2.34 LINK MG MG A 404 O HOH B 528 1555 1555 2.22 LINK MG MG A 404 O HOH B 540 1555 1555 2.27 CRYST1 71.860 94.464 101.296 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013916 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010586 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009872 0.00000