HEADER HYDROLASE 04-SEP-19 6SQU TITLE CRYSTAL STRUCTURE OF HUMAN SHIP2 CATALYTIC DOMAIN IN COMPLEX WITH 1,2, TITLE 2 4 DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 5-PHOSPHATASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: INOSITOL POLYPHOSPHATE PHOSPHATASE-LIKE PROTEIN 1,INPPL-1, COMPND 5 PROTEIN 51C,SH2 DOMAIN-CONTAINING INOSITOL 5'-PHOSPHATASE 2,SHIP-2; COMPND 6 EC: 3.1.3.86; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INPPL1, SHIP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 PLYSS KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WHITFIELD,C.A.BREARLEY,A.M.HEMMINGS REVDAT 3 24-JAN-24 6SQU 1 REMARK REVDAT 2 28-JUL-21 6SQU 1 JRNL REVDAT 1 13-JAN-21 6SQU 0 JRNL AUTH H.WHITFIELD,A.M.HEMMINGS,S.J.MILLS,K.BAKER,G.WHITE, JRNL AUTH 2 S.RUSHWORTH,A.M.RILEY,B.V.L.POTTER,C.A.BREARLEY JRNL TITL ALLOSTERIC SITE ON SHIP2 IDENTIFIED THROUGH FLUORESCENT JRNL TITL 2 LIGAND SCREENING AND CRYSTALLOGRAPHY: A POTENTIAL NEW TARGET JRNL TITL 3 FOR INTERVENTION. JRNL REF J.MED.CHEM. V. 64 3813 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33724834 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01944 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.940 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 27891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.3500 - 4.8882 0.99 2740 120 0.1906 0.2035 REMARK 3 2 4.8882 - 3.8808 0.99 2686 132 0.1619 0.2149 REMARK 3 3 3.8808 - 3.3905 1.00 2634 136 0.1832 0.2257 REMARK 3 4 3.3905 - 3.0806 0.99 2648 158 0.2062 0.2845 REMARK 3 5 3.0806 - 2.8599 1.00 2640 140 0.2219 0.3324 REMARK 3 6 2.8599 - 2.6913 1.00 2644 131 0.2387 0.3239 REMARK 3 7 2.6913 - 2.5565 1.00 2624 156 0.2527 0.3077 REMARK 3 8 2.5565 - 2.4453 1.00 2642 132 0.2683 0.3074 REMARK 3 9 2.4453 - 2.3511 1.00 2653 105 0.2762 0.3826 REMARK 3 10 2.3511 - 2.2700 1.00 2636 134 0.2973 0.3504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4855 REMARK 3 ANGLE : 0.517 6596 REMARK 3 CHIRALITY : 0.043 713 REMARK 3 PLANARITY : 0.002 832 REMARK 3 DIHEDRAL : 13.780 2852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 423 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7684 40.2346 -50.1953 REMARK 3 T TENSOR REMARK 3 T11: 0.6403 T22: 0.6080 REMARK 3 T33: 0.5149 T12: -0.0635 REMARK 3 T13: 0.0129 T23: 0.2222 REMARK 3 L TENSOR REMARK 3 L11: 3.8116 L22: 6.7707 REMARK 3 L33: 6.5207 L12: -0.9816 REMARK 3 L13: 0.2045 L23: -4.0884 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: 0.7118 S13: 0.5765 REMARK 3 S21: -0.3828 S22: 0.2892 S23: 0.2180 REMARK 3 S31: -0.8264 S32: -0.5201 S33: -0.3271 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 551 THROUGH 607 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5674 37.4527 -37.5596 REMARK 3 T TENSOR REMARK 3 T11: 0.6217 T22: 0.9908 REMARK 3 T33: 0.7787 T12: 0.0687 REMARK 3 T13: 0.1239 T23: 0.4064 REMARK 3 L TENSOR REMARK 3 L11: 3.0968 L22: 4.8228 REMARK 3 L33: 2.2994 L12: -0.9306 REMARK 3 L13: 1.6423 L23: -1.5387 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: 0.2375 S13: 0.4402 REMARK 3 S21: 0.1746 S22: 0.7801 S23: 0.9706 REMARK 3 S31: -1.2509 S32: -1.8083 S33: -0.9397 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 608 THROUGH 662 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6065 23.7115 -31.1968 REMARK 3 T TENSOR REMARK 3 T11: 0.3563 T22: 0.4734 REMARK 3 T33: 0.4504 T12: -0.0191 REMARK 3 T13: -0.0028 T23: 0.2171 REMARK 3 L TENSOR REMARK 3 L11: 8.3730 L22: 2.9799 REMARK 3 L33: 3.9627 L12: -0.3093 REMARK 3 L13: -0.4683 L23: -0.5946 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: -0.0375 S13: -0.2279 REMARK 3 S21: 0.0943 S22: 0.4173 S23: 0.5623 REMARK 3 S31: -0.1900 S32: -0.6009 S33: -0.3704 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 663 THROUGH 702 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2628 29.7236 -35.4056 REMARK 3 T TENSOR REMARK 3 T11: 0.3253 T22: 0.5462 REMARK 3 T33: 0.5305 T12: -0.0893 REMARK 3 T13: 0.0174 T23: 0.1425 REMARK 3 L TENSOR REMARK 3 L11: 2.6565 L22: 7.1300 REMARK 3 L33: 8.3803 L12: 2.1627 REMARK 3 L13: 3.6517 L23: 0.4248 REMARK 3 S TENSOR REMARK 3 S11: -0.5425 S12: 0.3701 S13: 0.0861 REMARK 3 S21: 0.0769 S22: 0.3803 S23: -0.2061 REMARK 3 S31: -0.3894 S32: -0.0022 S33: 0.0995 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 703 THROUGH 728 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6932 29.9830 -45.1235 REMARK 3 T TENSOR REMARK 3 T11: 0.4965 T22: 0.7228 REMARK 3 T33: 0.4175 T12: -0.1729 REMARK 3 T13: -0.0312 T23: 0.1818 REMARK 3 L TENSOR REMARK 3 L11: 6.8548 L22: 7.2210 REMARK 3 L33: 0.8427 L12: -1.0819 REMARK 3 L13: 0.1062 L23: -2.8720 REMARK 3 S TENSOR REMARK 3 S11: -0.2487 S12: 1.5845 S13: 0.0669 REMARK 3 S21: -0.7129 S22: 0.4035 S23: 0.1710 REMARK 3 S31: -0.0344 S32: 0.3313 S33: -0.2294 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 421 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9908 -5.8424 -14.2496 REMARK 3 T TENSOR REMARK 3 T11: 0.4824 T22: 0.4040 REMARK 3 T33: 0.4798 T12: -0.1831 REMARK 3 T13: -0.0138 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 3.9909 L22: 4.2910 REMARK 3 L33: 4.4365 L12: -1.8944 REMARK 3 L13: 0.3388 L23: 0.4931 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: 0.2956 S13: -0.6807 REMARK 3 S21: -0.4026 S22: 0.1260 S23: 0.6956 REMARK 3 S31: 0.5777 S32: -0.3544 S33: -0.0939 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 478 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1233 -6.7471 -2.8603 REMARK 3 T TENSOR REMARK 3 T11: 0.4627 T22: 0.3983 REMARK 3 T33: 0.3738 T12: -0.0751 REMARK 3 T13: 0.0163 T23: 0.1284 REMARK 3 L TENSOR REMARK 3 L11: 4.0070 L22: 6.6026 REMARK 3 L33: 3.7551 L12: 0.9258 REMARK 3 L13: 0.7834 L23: 0.0813 REMARK 3 S TENSOR REMARK 3 S11: 0.0730 S12: -0.4289 S13: -0.6665 REMARK 3 S21: 0.6685 S22: 0.1171 S23: 0.2879 REMARK 3 S31: 0.6148 S32: -0.4556 S33: -0.1782 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 551 THROUGH 568 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1535 6.3803 -9.0968 REMARK 3 T TENSOR REMARK 3 T11: 0.2605 T22: 0.3700 REMARK 3 T33: 0.2551 T12: -0.0536 REMARK 3 T13: -0.0220 T23: 0.0915 REMARK 3 L TENSOR REMARK 3 L11: 9.4235 L22: 7.7673 REMARK 3 L33: 2.5662 L12: -6.6892 REMARK 3 L13: -0.6476 L23: 2.6879 REMARK 3 S TENSOR REMARK 3 S11: -0.1219 S12: -0.2843 S13: -0.3239 REMARK 3 S21: -0.0653 S22: 0.1879 S23: 0.6676 REMARK 3 S31: -0.0182 S32: -0.0894 S33: 0.0551 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 569 THROUGH 582 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0850 15.5140 -7.1909 REMARK 3 T TENSOR REMARK 3 T11: 0.4756 T22: 0.5398 REMARK 3 T33: 0.6367 T12: -0.0837 REMARK 3 T13: -0.1027 T23: 0.1461 REMARK 3 L TENSOR REMARK 3 L11: 2.2626 L22: 2.3569 REMARK 3 L33: 2.3680 L12: -7.9722 REMARK 3 L13: 9.5737 L23: -8.5137 REMARK 3 S TENSOR REMARK 3 S11: -0.4681 S12: -0.4910 S13: 0.9853 REMARK 3 S21: 0.1671 S22: 0.2755 S23: -0.8025 REMARK 3 S31: -0.3079 S32: -0.4568 S33: 0.2751 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 583 THROUGH 607 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6369 1.9162 -5.6767 REMARK 3 T TENSOR REMARK 3 T11: 0.4065 T22: 0.3895 REMARK 3 T33: 0.5158 T12: -0.0370 REMARK 3 T13: 0.0397 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 2.3317 L22: 7.8607 REMARK 3 L33: 4.6355 L12: -1.7043 REMARK 3 L13: -1.6046 L23: 2.4292 REMARK 3 S TENSOR REMARK 3 S11: 0.0691 S12: 0.1746 S13: 0.0254 REMARK 3 S21: 0.6075 S22: 0.1320 S23: -0.8848 REMARK 3 S31: 0.2235 S32: 0.8850 S33: -0.2854 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 608 THROUGH 672 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7524 12.8749 -22.6429 REMARK 3 T TENSOR REMARK 3 T11: 0.3222 T22: 0.4477 REMARK 3 T33: 0.3262 T12: -0.0282 REMARK 3 T13: -0.0009 T23: 0.1377 REMARK 3 L TENSOR REMARK 3 L11: 7.3421 L22: 4.8614 REMARK 3 L33: 4.1955 L12: -0.0999 REMARK 3 L13: 1.9579 L23: -1.5610 REMARK 3 S TENSOR REMARK 3 S11: -0.0325 S12: 0.6343 S13: 0.5521 REMARK 3 S21: -0.3119 S22: -0.0438 S23: 0.1296 REMARK 3 S31: 0.2320 S32: -0.1464 S33: 0.0581 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 673 THROUGH 701 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4282 11.1353 -15.5916 REMARK 3 T TENSOR REMARK 3 T11: 0.3896 T22: 0.4681 REMARK 3 T33: 0.3337 T12: -0.1142 REMARK 3 T13: 0.0275 T23: 0.0914 REMARK 3 L TENSOR REMARK 3 L11: 0.4116 L22: 0.9790 REMARK 3 L33: 1.0316 L12: 0.3138 REMARK 3 L13: 0.6076 L23: -0.1365 REMARK 3 S TENSOR REMARK 3 S11: 0.1082 S12: -0.0084 S13: 0.2781 REMARK 3 S21: 0.1341 S22: 0.0131 S23: -0.0475 REMARK 3 S31: -0.0614 S32: -0.0233 S33: -0.0533 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 702 THROUGH 731 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5320 -2.6520 -17.8901 REMARK 3 T TENSOR REMARK 3 T11: 0.4103 T22: 0.3493 REMARK 3 T33: 0.3312 T12: -0.0847 REMARK 3 T13: -0.0958 T23: 0.0257 REMARK 3 L TENSOR REMARK 3 L11: 4.2720 L22: 5.8937 REMARK 3 L33: 5.0658 L12: -0.9290 REMARK 3 L13: -2.9602 L23: 0.0947 REMARK 3 S TENSOR REMARK 3 S11: -0.2883 S12: 0.5256 S13: -0.2438 REMARK 3 S21: -0.1050 S22: 0.2796 S23: -0.0531 REMARK 3 S31: 0.7941 S32: -0.3509 S33: -0.0182 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27911 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.270 REMARK 200 RESOLUTION RANGE LOW (A) : 41.354 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 1.06100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4A9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE, 25.5 % PEG REMARK 280 4000, 15 % GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.09500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 417 REMARK 465 MET A 418 REMARK 465 ASP A 419 REMARK 465 GLU A 420 REMARK 465 PRO A 421 REMARK 465 ASP A 422 REMARK 465 ILE A 534 REMARK 465 ALA A 535 REMARK 465 ASN A 536 REMARK 465 THR A 537 REMARK 465 LEU A 538 REMARK 465 GLY A 539 REMARK 465 LEU A 585 REMARK 465 GLY A 586 REMARK 465 ASP A 587 REMARK 465 ARG A 588 REMARK 465 GLN A 589 REMARK 465 LEU A 590 REMARK 465 ASN A 591 REMARK 465 ALA A 592 REMARK 465 PHE A 593 REMARK 465 ASP A 594 REMARK 465 ILE A 595 REMARK 465 SER A 596 REMARK 465 LEU A 597 REMARK 465 ARG A 598 REMARK 465 LYS A 675 REMARK 465 GLN A 676 REMARK 465 LYS A 677 REMARK 465 PRO A 678 REMARK 465 THR A 679 REMARK 465 GLY A 680 REMARK 465 VAL A 681 REMARK 465 ARG A 682 REMARK 465 THR A 683 REMARK 465 GLU A 699 REMARK 465 THR A 700 REMARK 465 HIS A 701 REMARK 465 VAL A 729 REMARK 465 THR A 730 REMARK 465 SER A 731 REMARK 465 GLN A 732 REMARK 465 SER B 417 REMARK 465 MET B 418 REMARK 465 ASP B 419 REMARK 465 GLU B 420 REMARK 465 ALA B 535 REMARK 465 ASN B 536 REMARK 465 THR B 537 REMARK 465 LEU B 538 REMARK 465 GLY B 539 REMARK 465 GLN B 732 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 ARG A 571 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 654 CG CD OE1 OE2 REMARK 470 TYR B 661 OH REMARK 470 GLN B 676 CG CD OE1 NE2 REMARK 470 HIS B 701 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 641 O PHE A 650 2.18 REMARK 500 O VAL B 476 NZ LYS B 509 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 506 -133.12 68.64 REMARK 500 HIS A 518 20.50 -148.77 REMARK 500 ASN A 551 -126.94 58.09 REMARK 500 ASP A 613 59.72 -92.76 REMARK 500 ASP A 669 20.71 -75.97 REMARK 500 TYR A 707 105.78 -166.62 REMARK 500 LYS B 453 92.69 -69.62 REMARK 500 TRP B 506 -114.19 58.85 REMARK 500 ASN B 520 0.51 -68.83 REMARK 500 ASN B 551 -123.33 55.95 REMARK 500 GLN B 589 9.15 -66.29 REMARK 500 VAL B 681 71.75 -108.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D7I B 801 DBREF 6SQU A 419 732 UNP O15357 SHIP2_HUMAN 419 732 DBREF 6SQU B 419 732 UNP O15357 SHIP2_HUMAN 419 732 SEQADV 6SQU SER A 417 UNP O15357 EXPRESSION TAG SEQADV 6SQU MET A 418 UNP O15357 EXPRESSION TAG SEQADV 6SQU SER B 417 UNP O15357 EXPRESSION TAG SEQADV 6SQU MET B 418 UNP O15357 EXPRESSION TAG SEQRES 1 A 316 SER MET ASP GLU PRO ASP MET ILE SER VAL PHE ILE GLY SEQRES 2 A 316 THR TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL SEQRES 3 A 316 THR SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU SEQRES 4 A 316 ASP GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL SEQRES 5 A 316 PHE GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP SEQRES 6 A 316 LEU ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP SEQRES 7 A 316 LEU ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN SEQRES 8 A 316 ILE LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN SEQRES 9 A 316 ARG ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY SEQRES 10 A 316 ILE ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SEQRES 11 A 316 SER PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN SEQRES 12 A 316 CYS HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG SEQRES 13 A 316 ASN GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU SEQRES 14 A 316 GLY ASP ARG GLN LEU ASN ALA PHE ASP ILE SER LEU ARG SEQRES 15 A 316 PHE THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG SEQRES 16 A 316 LEU ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER SEQRES 17 A 316 ARG LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU SEQRES 18 A 316 ASN LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SEQRES 19 A 316 SER GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR SEQRES 20 A 316 GLU ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN SEQRES 21 A 316 LYS PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS SEQRES 22 A 316 ASP ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE SEQRES 23 A 316 ILE CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SEQRES 24 A 316 SER ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY SEQRES 25 A 316 VAL THR SER GLN SEQRES 1 B 316 SER MET ASP GLU PRO ASP MET ILE SER VAL PHE ILE GLY SEQRES 2 B 316 THR TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL SEQRES 3 B 316 THR SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU SEQRES 4 B 316 ASP GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL SEQRES 5 B 316 PHE GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP SEQRES 6 B 316 LEU ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP SEQRES 7 B 316 LEU ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN SEQRES 8 B 316 ILE LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN SEQRES 9 B 316 ARG ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY SEQRES 10 B 316 ILE ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SEQRES 11 B 316 SER PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN SEQRES 12 B 316 CYS HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG SEQRES 13 B 316 ASN GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU SEQRES 14 B 316 GLY ASP ARG GLN LEU ASN ALA PHE ASP ILE SER LEU ARG SEQRES 15 B 316 PHE THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG SEQRES 16 B 316 LEU ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER SEQRES 17 B 316 ARG LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU SEQRES 18 B 316 ASN LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SEQRES 19 B 316 SER GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR SEQRES 20 B 316 GLU ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN SEQRES 21 B 316 LYS PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS SEQRES 22 B 316 ASP ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE SEQRES 23 B 316 ILE CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SEQRES 24 B 316 SER ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY SEQRES 25 B 316 VAL THR SER GLN HET D7I B 801 54 HETNAM D7I 5,5'-(ETHANE-1,2-DIYLBIS(OXY))BIS(BENZENE-5,4,2,1,- HETNAM 2 D7I TETRAYL)HEXAKISPHOSPHATE FORMUL 3 D7I C14 H20 O26 P6 FORMUL 4 HOH *47(H2 O) HELIX 1 AA1 VAL A 442 THR A 447 1 6 HELIX 2 AA2 VAL A 458 ILE A 462 5 5 HELIX 3 AA3 GLY A 477 ASP A 494 1 18 HELIX 4 AA4 PRO A 516 ASN A 520 5 5 HELIX 5 AA5 LYS A 568 LEU A 583 1 16 HELIX 6 AA6 ASP A 615 ARG A 625 1 11 HELIX 7 AA7 PHE A 628 ARG A 633 1 6 HELIX 8 AA8 ASP A 635 LYS A 643 1 9 HELIX 9 AA9 VAL B 442 THR B 447 1 6 HELIX 10 AB1 GLY B 477 ASP B 494 1 18 HELIX 11 AB2 PRO B 516 ASN B 520 5 5 HELIX 12 AB3 LYS B 568 LEU B 583 1 16 HELIX 13 AB4 ASP B 587 ASN B 591 5 5 HELIX 14 AB5 ASP B 594 ARG B 598 5 5 HELIX 15 AB6 ASP B 615 ARG B 625 1 11 HELIX 16 AB7 PHE B 628 ARG B 633 1 6 HELIX 17 AB8 ASP B 635 LYS B 643 1 9 SHEET 1 AA1 7 LEU A 451 LYS A 453 0 SHEET 2 AA1 7 ILE A 703 CYS A 709 -1 O CYS A 709 N LEU A 451 SHEET 3 AA1 7 VAL A 721 VAL A 727 -1 O PHE A 722 N GLY A 708 SHEET 4 AA1 7 ILE A 424 ASN A 432 -1 N ILE A 428 O GLY A 723 SHEET 5 AA1 7 ILE A 466 GLN A 472 1 O GLY A 470 N GLY A 429 SHEET 6 AA1 7 ILE A 508 VAL A 514 -1 O LYS A 509 N THR A 471 SHEET 7 AA1 7 ARG A 498 LEU A 505 -1 N ILE A 500 O VAL A 512 SHEET 1 AA2 5 ILE A 522 LYS A 531 0 SHEET 2 AA2 5 GLY A 542 PHE A 550 -1 O SER A 547 N SER A 526 SHEET 3 AA2 5 THR A 553 HIS A 561 -1 O THR A 553 N PHE A 550 SHEET 4 AA2 5 HIS A 601 ASP A 607 1 O PHE A 603 N GLY A 556 SHEET 5 AA2 5 ASP A 690 SER A 696 -1 O LEU A 693 N TRP A 604 SHEET 1 AA3 7 LEU B 451 LYS B 453 0 SHEET 2 AA3 7 ILE B 702 CYS B 709 -1 O TYR B 707 N LYS B 453 SHEET 3 AA3 7 VAL B 721 GLY B 728 -1 O PHE B 722 N GLY B 708 SHEET 4 AA3 7 MET B 423 ASN B 432 -1 N ILE B 428 O GLY B 723 SHEET 5 AA3 7 ILE B 466 GLN B 472 1 O GLY B 470 N GLY B 429 SHEET 6 AA3 7 ILE B 508 VAL B 514 -1 O LYS B 509 N THR B 471 SHEET 7 AA3 7 ARG B 498 LEU B 505 -1 N LEU B 505 O ILE B 508 SHEET 1 AA4 5 ILE B 522 LYS B 531 0 SHEET 2 AA4 5 GLY B 542 PHE B 550 -1 O MET B 549 N SER B 523 SHEET 3 AA4 5 THR B 553 HIS B 561 -1 O ASN B 559 N VAL B 544 SHEET 4 AA4 5 HIS B 601 ASP B 607 1 O PHE B 603 N VAL B 558 SHEET 5 AA4 5 ASP B 690 SER B 696 -1 O LEU B 693 N TRP B 604 CISPEP 1 TYR A 661 ARG A 662 0 -1.99 CISPEP 2 TYR B 661 ARG B 662 0 -5.65 SITE 1 AC1 14 THR A 569 ASP A 613 GLU A 640 LYS A 643 SITE 2 AC1 14 LYS A 645 THR B 569 ALA B 570 ASP B 613 SITE 3 AC1 14 GLN B 636 GLU B 640 LYS B 643 LYS B 645 SITE 4 AC1 14 HOH B 904 HOH B 906 CRYST1 44.410 60.190 113.960 90.00 92.75 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022517 0.000000 0.001082 0.00000 SCALE2 0.000000 0.016614 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008785 0.00000