HEADER HYDROLASE 05-SEP-19 6SRR TITLE CRYSTAL STRUCTURE OF HUMAN SHIP2 CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 5-PHOSPHATASE 2; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: INOSITOL POLYPHOSPHATE PHOSPHATASE-LIKE PROTEIN 1,INPPL-1, COMPND 5 PROTEIN 51C,SH2 DOMAIN-CONTAINING INOSITOL 5'-PHOSPHATASE 2,SHIP-2; COMPND 6 EC: 3.1.3.86; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INPPL1, SHIP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WHITFIELD,C.A.BREARLEY,A.M.HEMMINGS REVDAT 3 24-JAN-24 6SRR 1 REMARK REVDAT 2 28-JUL-21 6SRR 1 JRNL REVDAT 1 13-JAN-21 6SRR 0 JRNL AUTH H.WHITFIELD,A.M.HEMMINGS,S.J.MILLS,K.BAKER,G.WHITE, JRNL AUTH 2 S.RUSHWORTH,A.M.RILEY,B.V.L.POTTER,C.A.BREARLEY JRNL TITL ALLOSTERIC SITE ON SHIP2 IDENTIFIED THROUGH FLUORESCENT JRNL TITL 2 LIGAND SCREENING AND CRYSTALLOGRAPHY: A POTENTIAL NEW TARGET JRNL TITL 3 FOR INTERVENTION. JRNL REF J.MED.CHEM. V. 64 3813 2021 JRNL REFN ISSN 0022-2623 JRNL PMID 33724834 JRNL DOI 10.1021/ACS.JMEDCHEM.0C01944 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 23587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 1112 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4900 - 4.8966 0.99 2880 134 0.1675 0.2012 REMARK 3 2 4.8966 - 3.8880 0.99 2809 142 0.1553 0.1842 REMARK 3 3 3.8880 - 3.3969 1.00 2835 119 0.1786 0.2459 REMARK 3 4 3.3969 - 3.0865 1.00 2808 152 0.2132 0.2778 REMARK 3 5 3.0865 - 2.8654 0.99 2802 130 0.2090 0.3089 REMARK 3 6 2.8654 - 2.6965 0.99 2776 146 0.2428 0.2870 REMARK 3 7 2.6965 - 2.5615 0.99 2801 122 0.2822 0.3884 REMARK 3 8 2.5615 - 2.4500 1.00 2764 167 0.2825 0.3559 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4921 REMARK 3 ANGLE : 0.994 6689 REMARK 3 CHIRALITY : 0.060 740 REMARK 3 PLANARITY : 0.008 854 REMARK 3 DIHEDRAL : 17.232 2877 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 421 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1167 -28.9179 -49.8797 REMARK 3 T TENSOR REMARK 3 T11: 0.4312 T22: 0.4935 REMARK 3 T33: 0.4446 T12: 0.0449 REMARK 3 T13: -0.0401 T23: -0.1517 REMARK 3 L TENSOR REMARK 3 L11: 5.3599 L22: 3.7228 REMARK 3 L33: 4.2710 L12: 0.8488 REMARK 3 L13: 0.0797 L23: 0.6478 REMARK 3 S TENSOR REMARK 3 S11: 0.0383 S12: 0.5400 S13: -0.5165 REMARK 3 S21: -0.1523 S22: 0.2700 S23: -0.3035 REMARK 3 S31: 0.3517 S32: 0.2860 S33: -0.2705 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 551 THROUGH 600 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9569 -16.1708 -51.3848 REMARK 3 T TENSOR REMARK 3 T11: 0.5512 T22: 0.7391 REMARK 3 T33: 0.5294 T12: 0.0325 REMARK 3 T13: -0.1000 T23: -0.1192 REMARK 3 L TENSOR REMARK 3 L11: 2.4540 L22: 6.1933 REMARK 3 L33: 3.7894 L12: -0.8128 REMARK 3 L13: -0.7253 L23: -1.7337 REMARK 3 S TENSOR REMARK 3 S11: -0.0872 S12: -0.1902 S13: 0.1004 REMARK 3 S21: -0.6771 S22: -0.0930 S23: 0.7102 REMARK 3 S31: -0.1957 S32: -0.8086 S33: 0.2015 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 601 THROUGH 731 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9684 -14.7634 -38.1792 REMARK 3 T TENSOR REMARK 3 T11: 0.4072 T22: 0.6075 REMARK 3 T33: 0.4065 T12: -0.0035 REMARK 3 T13: 0.0114 T23: -0.0750 REMARK 3 L TENSOR REMARK 3 L11: 3.1595 L22: 2.8555 REMARK 3 L33: 2.1746 L12: 1.7381 REMARK 3 L13: 1.3458 L23: 1.5220 REMARK 3 S TENSOR REMARK 3 S11: 0.1303 S12: -0.1745 S13: -0.0211 REMARK 3 S21: 0.1239 S22: -0.0447 S23: -0.1508 REMARK 3 S31: 0.0073 S32: 0.0875 S33: -0.0898 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 615 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4520 14.9190 -11.2138 REMARK 3 T TENSOR REMARK 3 T11: 0.5572 T22: 0.5923 REMARK 3 T33: 0.5618 T12: -0.0415 REMARK 3 T13: 0.0338 T23: -0.1748 REMARK 3 L TENSOR REMARK 3 L11: 3.3230 L22: 5.8963 REMARK 3 L33: 5.4595 L12: 0.2336 REMARK 3 L13: 0.3946 L23: 3.4992 REMARK 3 S TENSOR REMARK 3 S11: -0.0946 S12: -0.4842 S13: 0.4342 REMARK 3 S21: 0.2630 S22: 0.4634 S23: -0.4340 REMARK 3 S31: -0.6224 S32: 0.7860 S33: -0.2581 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 616 THROUGH 652 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1484 -1.2323 -26.8483 REMARK 3 T TENSOR REMARK 3 T11: 0.4240 T22: 0.5349 REMARK 3 T33: 0.5026 T12: 0.0049 REMARK 3 T13: 0.0329 T23: -0.1694 REMARK 3 L TENSOR REMARK 3 L11: 9.0057 L22: 3.1857 REMARK 3 L33: 4.8198 L12: -1.2172 REMARK 3 L13: 1.6549 L23: 1.0278 REMARK 3 S TENSOR REMARK 3 S11: 0.2394 S12: 0.0271 S13: -0.4665 REMARK 3 S21: 0.0924 S22: 0.4482 S23: -0.5271 REMARK 3 S31: 0.0847 S32: 0.9318 S33: -0.5728 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 653 THROUGH 730 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7236 5.3673 -17.4978 REMARK 3 T TENSOR REMARK 3 T11: 0.3891 T22: 0.4162 REMARK 3 T33: 0.3851 T12: 0.0434 REMARK 3 T13: 0.0368 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 6.7658 L22: 6.0892 REMARK 3 L33: 5.4963 L12: 0.7226 REMARK 3 L13: 0.4047 L23: 3.1965 REMARK 3 S TENSOR REMARK 3 S11: -0.2777 S12: -0.5781 S13: 0.4004 REMARK 3 S21: 0.3556 S22: 0.2881 S23: -0.0252 REMARK 3 S31: -0.0164 S32: 0.1337 S33: 0.0915 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23610 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 42.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4A9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 20 % W/V PEG REMARK 280 3000, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.06000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 417 REMARK 465 MET B 418 REMARK 465 ASP B 419 REMARK 465 GLU B 420 REMARK 465 GLN B 732 REMARK 465 SER A 417 REMARK 465 MET A 418 REMARK 465 ASP A 419 REMARK 465 GLU A 420 REMARK 465 PRO A 421 REMARK 465 GLY A 533 REMARK 465 ILE A 534 REMARK 465 ALA A 535 REMARK 465 ASN A 536 REMARK 465 THR A 537 REMARK 465 LEU A 538 REMARK 465 GLY A 539 REMARK 465 GLY A 586 REMARK 465 ASP A 587 REMARK 465 ARG A 588 REMARK 465 GLN A 589 REMARK 465 LEU A 590 REMARK 465 ASN A 591 REMARK 465 GLN A 676 REMARK 465 LYS A 677 REMARK 465 PRO A 678 REMARK 465 THR A 679 REMARK 465 GLY A 680 REMARK 465 VAL A 681 REMARK 465 ARG A 682 REMARK 465 SER A 731 REMARK 465 GLN A 732 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET B 423 CG SD CE REMARK 470 ARG B 479 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 486 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 498 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 479 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 490 CG CD CE NZ REMARK 470 GLU A 519 CG CD OE1 OE2 REMARK 470 LYS A 568 CG CD CE NZ REMARK 470 LEU A 582 CG CD1 CD2 REMARK 470 PHE A 593 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 594 CG OD1 OD2 REMARK 470 LEU A 597 CG CD1 CD2 REMARK 470 ARG A 598 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 695 CG CD CE NZ REMARK 470 TYR A 697 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 447 NZ LYS A 449 1.80 REMARK 500 OG SER A 596 NH2 ARG A 649 1.93 REMARK 500 OE2 GLU B 652 NH1 ARG B 691 2.00 REMARK 500 OD2 ASP A 465 NZ LYS A 515 2.07 REMARK 500 OE2 GLU B 629 O HOH B 801 2.11 REMARK 500 OE2 GLU A 473 O HOH A 801 2.11 REMARK 500 O GLY A 565 NH2 ARG A 572 2.15 REMARK 500 OD2 ASP B 478 NZ LYS B 509 2.16 REMARK 500 OG SER A 444 OD2 ASP A 712 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 445 CB TRP A 445 CG -0.115 REMARK 500 ARG A 581 NE ARG A 581 CZ -0.123 REMARK 500 ARG A 581 CZ ARG A 581 NH2 -0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 449 CD - CE - NZ ANGL. DEV. = -15.9 DEGREES REMARK 500 ARG A 581 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 581 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU B 455 43.92 -108.80 REMARK 500 TRP B 506 -115.31 60.19 REMARK 500 ILE B 534 106.27 -58.84 REMARK 500 ASN B 551 -120.26 45.45 REMARK 500 SER B 584 72.82 -109.83 REMARK 500 ASN B 591 -39.28 -141.11 REMARK 500 PHE B 593 158.22 -49.27 REMARK 500 PHE B 647 51.67 39.44 REMARK 500 HIS B 674 63.53 -155.20 REMARK 500 THR B 730 -156.47 -82.31 REMARK 500 ASP A 456 -164.83 -48.77 REMARK 500 VAL A 458 -61.80 -123.88 REMARK 500 TRP A 506 -106.97 49.84 REMARK 500 THR A 527 116.35 -165.31 REMARK 500 ASN A 551 -117.23 57.29 REMARK 500 LYS A 568 31.33 -89.49 REMARK 500 LEU A 582 -47.27 -131.38 REMARK 500 ARG A 649 33.24 39.12 REMARK 500 ASN A 684 83.66 -150.22 REMARK 500 PRO A 698 -75.16 -59.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 697 PRO A 698 -145.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 6SRR B 419 732 UNP O15357 SHIP2_HUMAN 419 732 DBREF 6SRR A 419 732 UNP O15357 SHIP2_HUMAN 419 732 SEQADV 6SRR SER B 417 UNP O15357 EXPRESSION TAG SEQADV 6SRR MET B 418 UNP O15357 EXPRESSION TAG SEQADV 6SRR SER A 417 UNP O15357 EXPRESSION TAG SEQADV 6SRR MET A 418 UNP O15357 EXPRESSION TAG SEQRES 1 B 316 SER MET ASP GLU PRO ASP MET ILE SER VAL PHE ILE GLY SEQRES 2 B 316 THR TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL SEQRES 3 B 316 THR SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU SEQRES 4 B 316 ASP GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL SEQRES 5 B 316 PHE GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP SEQRES 6 B 316 LEU ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP SEQRES 7 B 316 LEU ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN SEQRES 8 B 316 ILE LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN SEQRES 9 B 316 ARG ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY SEQRES 10 B 316 ILE ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SEQRES 11 B 316 SER PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN SEQRES 12 B 316 CYS HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG SEQRES 13 B 316 ASN GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU SEQRES 14 B 316 GLY ASP ARG GLN LEU ASN ALA PHE ASP ILE SER LEU ARG SEQRES 15 B 316 PHE THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG SEQRES 16 B 316 LEU ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER SEQRES 17 B 316 ARG LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU SEQRES 18 B 316 ASN LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SEQRES 19 B 316 SER GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR SEQRES 20 B 316 GLU ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN SEQRES 21 B 316 LYS PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS SEQRES 22 B 316 ASP ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE SEQRES 23 B 316 ILE CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SEQRES 24 B 316 SER ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY SEQRES 25 B 316 VAL THR SER GLN SEQRES 1 A 316 SER MET ASP GLU PRO ASP MET ILE SER VAL PHE ILE GLY SEQRES 2 A 316 THR TRP ASN MET GLY SER VAL PRO PRO PRO LYS ASN VAL SEQRES 3 A 316 THR SER TRP PHE THR SER LYS GLY LEU GLY LYS THR LEU SEQRES 4 A 316 ASP GLU VAL THR VAL THR ILE PRO HIS ASP ILE TYR VAL SEQRES 5 A 316 PHE GLY THR GLN GLU ASN SER VAL GLY ASP ARG GLU TRP SEQRES 6 A 316 LEU ASP LEU LEU ARG GLY GLY LEU LYS GLU LEU THR ASP SEQRES 7 A 316 LEU ASP TYR ARG PRO ILE ALA MET GLN SER LEU TRP ASN SEQRES 8 A 316 ILE LYS VAL ALA VAL LEU VAL LYS PRO GLU HIS GLU ASN SEQRES 9 A 316 ARG ILE SER HIS VAL SER THR SER SER VAL LYS THR GLY SEQRES 10 A 316 ILE ALA ASN THR LEU GLY ASN LYS GLY ALA VAL GLY VAL SEQRES 11 A 316 SER PHE MET PHE ASN GLY THR SER PHE GLY PHE VAL ASN SEQRES 12 A 316 CYS HIS LEU THR SER GLY ASN GLU LYS THR ALA ARG ARG SEQRES 13 A 316 ASN GLN ASN TYR LEU ASP ILE LEU ARG LEU LEU SER LEU SEQRES 14 A 316 GLY ASP ARG GLN LEU ASN ALA PHE ASP ILE SER LEU ARG SEQRES 15 A 316 PHE THR HIS LEU PHE TRP PHE GLY ASP LEU ASN TYR ARG SEQRES 16 A 316 LEU ASP MET ASP ILE GLN GLU ILE LEU ASN TYR ILE SER SEQRES 17 A 316 ARG LYS GLU PHE GLU PRO LEU LEU ARG VAL ASP GLN LEU SEQRES 18 A 316 ASN LEU GLU ARG GLU LYS HIS LYS VAL PHE LEU ARG PHE SEQRES 19 A 316 SER GLU GLU GLU ILE SER PHE PRO PRO THR TYR ARG TYR SEQRES 20 A 316 GLU ARG GLY SER ARG ASP THR TYR ALA TRP HIS LYS GLN SEQRES 21 A 316 LYS PRO THR GLY VAL ARG THR ASN VAL PRO SER TRP CYS SEQRES 22 A 316 ASP ARG ILE LEU TRP LYS SER TYR PRO GLU THR HIS ILE SEQRES 23 A 316 ILE CYS ASN SER TYR GLY CYS THR ASP ASP ILE VAL THR SEQRES 24 A 316 SER ASP HIS SER PRO VAL PHE GLY THR PHE GLU VAL GLY SEQRES 25 A 316 VAL THR SER GLN FORMUL 3 HOH *33(H2 O) HELIX 1 AA1 VAL B 442 THR B 447 1 6 HELIX 2 AA2 GLY B 477 ASP B 494 1 18 HELIX 3 AA3 PRO B 516 ASN B 520 5 5 HELIX 4 AA4 LYS B 568 LEU B 583 1 16 HELIX 5 AA5 ASP B 594 PHE B 599 1 6 HELIX 6 AA6 ASP B 615 ARG B 625 1 11 HELIX 7 AA7 PHE B 628 ARG B 633 1 6 HELIX 8 AA8 ASP B 635 LYS B 643 1 9 HELIX 9 AA9 VAL A 442 THR A 447 1 6 HELIX 10 AB1 GLY A 477 ASP A 494 1 18 HELIX 11 AB2 PRO A 516 ASN A 520 5 5 HELIX 12 AB3 LYS A 568 ARG A 581 1 14 HELIX 13 AB4 ASP A 594 ARG A 598 5 5 HELIX 14 AB5 ASP A 615 ARG A 625 1 11 HELIX 15 AB6 PHE A 628 ARG A 633 1 6 HELIX 16 AB7 ASP A 635 LYS A 643 1 9 SHEET 1 AA1 7 LEU B 451 LYS B 453 0 SHEET 2 AA1 7 ILE B 702 CYS B 709 -1 O TYR B 707 N LYS B 453 SHEET 3 AA1 7 VAL B 721 GLY B 728 -1 O PHE B 722 N GLY B 708 SHEET 4 AA1 7 MET B 423 ASN B 432 -1 N ILE B 424 O VAL B 727 SHEET 5 AA1 7 ILE B 466 GLN B 472 1 O GLY B 470 N GLY B 429 SHEET 6 AA1 7 ILE B 508 VAL B 514 -1 O LEU B 513 N TYR B 467 SHEET 7 AA1 7 ARG B 498 LEU B 505 -1 N ILE B 500 O VAL B 512 SHEET 1 AA2 5 ILE B 522 VAL B 530 0 SHEET 2 AA2 5 GLY B 542 PHE B 550 -1 O SER B 547 N SER B 526 SHEET 3 AA2 5 THR B 553 HIS B 561 -1 O ASN B 559 N VAL B 544 SHEET 4 AA2 5 HIS B 601 ASP B 607 1 O PHE B 605 N VAL B 558 SHEET 5 AA2 5 ASP B 690 SER B 696 -1 O LEU B 693 N TRP B 604 SHEET 1 AA3 2 HIS B 674 LYS B 675 0 SHEET 2 AA3 2 ARG B 682 THR B 683 -1 O ARG B 682 N LYS B 675 SHEET 1 AA4 7 LEU A 451 LYS A 453 0 SHEET 2 AA4 7 ILE A 702 CYS A 709 -1 O CYS A 709 N LEU A 451 SHEET 3 AA4 7 VAL A 721 GLY A 728 -1 O PHE A 722 N GLY A 708 SHEET 4 AA4 7 MET A 423 ASN A 432 -1 N THR A 430 O VAL A 721 SHEET 5 AA4 7 ILE A 466 GLN A 472 1 O GLY A 470 N GLY A 429 SHEET 6 AA4 7 ILE A 508 VAL A 514 -1 O LYS A 509 N THR A 471 SHEET 7 AA4 7 ARG A 498 LEU A 505 -1 N ILE A 500 O VAL A 512 SHEET 1 AA5 5 ILE A 522 LYS A 531 0 SHEET 2 AA5 5 GLY A 542 PHE A 550 -1 O SER A 547 N SER A 526 SHEET 3 AA5 5 THR A 553 HIS A 561 -1 O HIS A 561 N GLY A 542 SHEET 4 AA5 5 HIS A 601 ASP A 607 1 O PHE A 605 N VAL A 558 SHEET 5 AA5 5 ASP A 690 SER A 696 -1 O LEU A 693 N TRP A 604 CISPEP 1 TYR B 661 ARG B 662 0 -13.15 CRYST1 45.130 62.120 115.620 90.00 92.38 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022158 0.000000 0.000921 0.00000 SCALE2 0.000000 0.016098 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008656 0.00000