HEADER VIRAL PROTEIN 11-SEP-19 6STW TITLE ADENOVIRUS 15 FIBER KNOB PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBER PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: SPIKE,PROTEIN IV; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ADENOVIRUS D SEROTYPE 15; SOURCE 3 ORGANISM_COMMON: HADV-15; SOURCE 4 ORGANISM_TAXID: 28276; SOURCE 5 GENE: L5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADENOVIRUS, TYPE 15, 3D STRUCTURE, FIBER KNOB, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.M.MUNDY,A.T.BAKER,P.J.RIZKALLAH,A.L.PARKER REVDAT 3 11-OCT-23 6STW 1 JRNL REVDAT 2 20-SEP-23 6STW 1 JRNL REVDAT 1 31-MAR-21 6STW 0 JRNL AUTH R.M.MUNDY,A.T.BAKER,E.A.BATES,T.G.CUNLIFFE, JRNL AUTH 2 A.TEIJEIRA-CRESPO,E.MOSES,P.J.RIZKALLAH,A.L.PARKER JRNL TITL BROAD SIALIC ACID USAGE AMONGST SPECIES D HUMAN ADENOVIRUS JRNL REF NPJ VIRUSES V. 1 1 2023 JRNL DOI 10.1038/S44298-023-00001-5 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 113301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5905 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8293 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 412 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 695 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.21000 REMARK 3 B22 (A**2) : 1.05000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.510 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4860 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4377 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6631 ; 1.722 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10322 ; 1.487 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 622 ; 7.497 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;38.487 ;26.303 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 875 ;13.920 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ; 4.401 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 662 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5499 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 918 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 17.0805 -6.5887 -14.4817 REMARK 3 T TENSOR REMARK 3 T11: 0.0250 T22: 0.0210 REMARK 3 T33: 0.1107 T12: -0.0072 REMARK 3 T13: -0.0288 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 1.5109 L22: 2.4300 REMARK 3 L33: 1.2589 L12: -0.4801 REMARK 3 L13: 0.4881 L23: 0.2347 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.1020 S13: 0.0581 REMARK 3 S21: 0.1762 S22: 0.0206 S23: -0.1267 REMARK 3 S31: -0.0699 S32: 0.0787 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 190 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7144 -1.5761 -32.5048 REMARK 3 T TENSOR REMARK 3 T11: 0.0314 T22: 0.0119 REMARK 3 T33: 0.1335 T12: 0.0122 REMARK 3 T13: -0.0152 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.2234 L22: 1.5006 REMARK 3 L33: 1.1708 L12: 0.0949 REMARK 3 L13: -0.4447 L23: -0.3095 REMARK 3 S TENSOR REMARK 3 S11: 0.0617 S12: 0.1095 S13: 0.0692 REMARK 3 S21: -0.1804 S22: -0.0300 S23: 0.0645 REMARK 3 S31: -0.0531 S32: -0.0641 S33: -0.0317 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 190 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7128 -15.0830 -39.9566 REMARK 3 T TENSOR REMARK 3 T11: 0.0341 T22: 0.0452 REMARK 3 T33: 0.1495 T12: -0.0099 REMARK 3 T13: 0.0186 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 2.0690 L22: 1.4485 REMARK 3 L33: 1.9019 L12: 0.3282 REMARK 3 L13: 0.5695 L23: 0.5396 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: 0.1365 S13: 0.0696 REMARK 3 S21: -0.2166 S22: 0.0819 S23: -0.1844 REMARK 3 S31: -0.0705 S32: 0.2888 S33: -0.0704 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6STW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292103401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8. REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 500K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119296 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 39.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 1.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SPG, 25% W/V PEG 1500, PH 8., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.79000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP C 178 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN C 360 O HOH C 401 1.80 REMARK 500 O HOH C 412 O HOH C 553 1.97 REMARK 500 OD1 ASP C 187 O HOH C 402 2.06 REMARK 500 O HOH B 416 O HOH B 511 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR B 184 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 179 37.65 72.29 REMARK 500 THR A 185 168.99 66.13 REMARK 500 ASN A 191 15.81 -142.26 REMARK 500 ASN A 191 15.89 -142.26 REMARK 500 ASN A 228 73.07 -153.25 REMARK 500 SER A 272 52.35 -101.87 REMARK 500 LEU A 274 129.46 -37.02 REMARK 500 ALA A 281 38.59 -150.47 REMARK 500 SER A 311 -166.25 -163.60 REMARK 500 SER A 311 -166.42 -162.18 REMARK 500 THR B 185 156.21 71.96 REMARK 500 THR B 185 156.21 76.24 REMARK 500 ASN B 228 71.91 -156.14 REMARK 500 ALA B 281 40.17 -151.93 REMARK 500 THR C 185 167.76 69.20 REMARK 500 ASN C 191 16.88 -142.65 REMARK 500 ASN C 191 19.17 -142.65 REMARK 500 ASN C 228 75.75 -151.96 REMARK 500 ASP C 270 -154.52 -105.37 REMARK 500 TYR C 278 -96.90 -144.71 REMARK 500 LYS C 296 -129.51 9.18 REMARK 500 SER C 311 -164.94 -161.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 6STW A 178 367 UNP P36847 SPIKE_ADE15 178 367 DBREF 6STW B 178 367 UNP P36847 SPIKE_ADE15 178 367 DBREF 6STW C 178 367 UNP P36847 SPIKE_ADE15 178 367 SEQADV 6STW LYS A 179 UNP P36847 MET 179 CONFLICT SEQADV 6STW LEU A 180 UNP P36847 ARG 180 CONFLICT SEQADV 6STW LYS B 179 UNP P36847 MET 179 CONFLICT SEQADV 6STW LEU B 180 UNP P36847 ARG 180 CONFLICT SEQADV 6STW LYS C 179 UNP P36847 MET 179 CONFLICT SEQADV 6STW LEU C 180 UNP P36847 ARG 180 CONFLICT SEQRES 1 A 190 ASP LYS LEU THR LEU TRP THR THR PRO ASP PRO SER PRO SEQRES 2 A 190 ASN CYS LYS ILE ILE GLU ASP LYS ASP SER LYS LEU THR SEQRES 3 A 190 LEU ILE LEU THR LYS CYS GLY SER GLN ILE LEU GLY SER SEQRES 4 A 190 VAL SER LEU LEU VAL VAL LYS GLY LYS PHE SER ASN ILE SEQRES 5 A 190 ASN ASN THR THR ASN PRO ASN GLU ALA ASP LYS GLN ILE SEQRES 6 A 190 THR VAL LYS LEU LEU PHE ASP ALA ASN GLY VAL LEU LYS SEQRES 7 A 190 GLN GLY SER THR MET ASP SER SER TYR TRP ASN TYR ARG SEQRES 8 A 190 SER ASP ASN SER ASN LEU SER GLN PRO TYR LYS LYS ALA SEQRES 9 A 190 VAL GLY PHE MET PRO SER LYS THR ALA TYR PRO LYS GLN SEQRES 10 A 190 THR LYS PRO THR ASN LYS GLU ILE SER GLN ALA LYS ASN SEQRES 11 A 190 LYS ILE VAL SER ASN VAL TYR LEU GLY GLY LYS ILE ASP SEQRES 12 A 190 GLN PRO CYS VAL ILE ILE ILE SER PHE ASN GLU GLU ALA SEQRES 13 A 190 ASP SER ASP TYR SER ILE VAL PHE TYR PHE LYS TRP TYR SEQRES 14 A 190 LYS THR TYR GLU ASN VAL GLN PHE ASP SER SER SER PHE SEQRES 15 A 190 ASN PHE SER TYR ILE ALA GLN GLU SEQRES 1 B 190 ASP LYS LEU THR LEU TRP THR THR PRO ASP PRO SER PRO SEQRES 2 B 190 ASN CYS LYS ILE ILE GLU ASP LYS ASP SER LYS LEU THR SEQRES 3 B 190 LEU ILE LEU THR LYS CYS GLY SER GLN ILE LEU GLY SER SEQRES 4 B 190 VAL SER LEU LEU VAL VAL LYS GLY LYS PHE SER ASN ILE SEQRES 5 B 190 ASN ASN THR THR ASN PRO ASN GLU ALA ASP LYS GLN ILE SEQRES 6 B 190 THR VAL LYS LEU LEU PHE ASP ALA ASN GLY VAL LEU LYS SEQRES 7 B 190 GLN GLY SER THR MET ASP SER SER TYR TRP ASN TYR ARG SEQRES 8 B 190 SER ASP ASN SER ASN LEU SER GLN PRO TYR LYS LYS ALA SEQRES 9 B 190 VAL GLY PHE MET PRO SER LYS THR ALA TYR PRO LYS GLN SEQRES 10 B 190 THR LYS PRO THR ASN LYS GLU ILE SER GLN ALA LYS ASN SEQRES 11 B 190 LYS ILE VAL SER ASN VAL TYR LEU GLY GLY LYS ILE ASP SEQRES 12 B 190 GLN PRO CYS VAL ILE ILE ILE SER PHE ASN GLU GLU ALA SEQRES 13 B 190 ASP SER ASP TYR SER ILE VAL PHE TYR PHE LYS TRP TYR SEQRES 14 B 190 LYS THR TYR GLU ASN VAL GLN PHE ASP SER SER SER PHE SEQRES 15 B 190 ASN PHE SER TYR ILE ALA GLN GLU SEQRES 1 C 190 ASP LYS LEU THR LEU TRP THR THR PRO ASP PRO SER PRO SEQRES 2 C 190 ASN CYS LYS ILE ILE GLU ASP LYS ASP SER LYS LEU THR SEQRES 3 C 190 LEU ILE LEU THR LYS CYS GLY SER GLN ILE LEU GLY SER SEQRES 4 C 190 VAL SER LEU LEU VAL VAL LYS GLY LYS PHE SER ASN ILE SEQRES 5 C 190 ASN ASN THR THR ASN PRO ASN GLU ALA ASP LYS GLN ILE SEQRES 6 C 190 THR VAL LYS LEU LEU PHE ASP ALA ASN GLY VAL LEU LYS SEQRES 7 C 190 GLN GLY SER THR MET ASP SER SER TYR TRP ASN TYR ARG SEQRES 8 C 190 SER ASP ASN SER ASN LEU SER GLN PRO TYR LYS LYS ALA SEQRES 9 C 190 VAL GLY PHE MET PRO SER LYS THR ALA TYR PRO LYS GLN SEQRES 10 C 190 THR LYS PRO THR ASN LYS GLU ILE SER GLN ALA LYS ASN SEQRES 11 C 190 LYS ILE VAL SER ASN VAL TYR LEU GLY GLY LYS ILE ASP SEQRES 12 C 190 GLN PRO CYS VAL ILE ILE ILE SER PHE ASN GLU GLU ALA SEQRES 13 C 190 ASP SER ASP TYR SER ILE VAL PHE TYR PHE LYS TRP TYR SEQRES 14 C 190 LYS THR TYR GLU ASN VAL GLN PHE ASP SER SER SER PHE SEQRES 15 C 190 ASN PHE SER TYR ILE ALA GLN GLU FORMUL 4 HOH *695(H2 O) HELIX 1 AA1 GLY A 224 ASN A 228 5 5 HELIX 2 AA2 ASN A 236 ASP A 239 5 4 HELIX 3 AA3 ALA A 281 MET A 285 5 5 HELIX 4 AA4 GLY A 316 LYS A 318 5 3 HELIX 5 AA5 GLY B 224 ASN B 228 5 5 HELIX 6 AA6 ASN B 236 ASP B 239 5 4 HELIX 7 AA7 ALA B 281 MET B 285 5 5 HELIX 8 AA8 GLY B 316 LYS B 318 5 3 HELIX 9 AA9 GLY C 224 ASN C 228 5 5 HELIX 10 AB1 ASN C 236 ASP C 239 5 4 HELIX 11 AB2 TYR C 278 GLY C 283 1 6 HELIX 12 AB3 GLY C 316 LYS C 318 5 3 SHEET 1 AA1 5 ASN A 266 TYR A 267 0 SHEET 2 AA1 5 THR A 181 TRP A 183 -1 N TRP A 183 O ASN A 266 SHEET 3 AA1 5 SER A 200 CYS A 209 -1 O LEU A 206 N LEU A 182 SHEET 4 AA1 5 GLN A 212 VAL A 221 -1 O LEU A 214 N THR A 207 SHEET 5 AA1 5 PHE A 359 ILE A 364 -1 O PHE A 361 N GLY A 215 SHEET 1 AA2 2 ILE A 229 ASN A 230 0 SHEET 2 AA2 2 GLU A 350 VAL A 352 -1 O VAL A 352 N ILE A 229 SHEET 1 AA3 4 GLN A 241 PHE A 248 0 SHEET 2 AA3 4 TYR A 337 LYS A 344 -1 O PHE A 343 N ILE A 242 SHEET 3 AA3 4 PRO A 322 PHE A 329 -1 N ILE A 326 O TYR A 342 SHEET 4 AA3 4 LYS A 308 TYR A 314 -1 N VAL A 313 O CYS A 323 SHEET 1 AA4 5 ASN B 266 TYR B 267 0 SHEET 2 AA4 5 THR B 181 TRP B 183 -1 N TRP B 183 O ASN B 266 SHEET 3 AA4 5 SER B 200 CYS B 209 -1 O LEU B 206 N LEU B 182 SHEET 4 AA4 5 GLN B 212 VAL B 221 -1 O GLN B 212 N CYS B 209 SHEET 5 AA4 5 PHE B 359 ILE B 364 -1 O PHE B 361 N GLY B 215 SHEET 1 AA5 2 ILE B 229 ASN B 230 0 SHEET 2 AA5 2 GLU B 350 VAL B 352 -1 O VAL B 352 N ILE B 229 SHEET 1 AA6 4 GLN B 241 PHE B 248 0 SHEET 2 AA6 4 TYR B 337 LYS B 344 -1 O PHE B 343 N ILE B 242 SHEET 3 AA6 4 PRO B 322 PHE B 329 -1 N VAL B 324 O LYS B 344 SHEET 4 AA6 4 LYS B 308 TYR B 314 -1 N VAL B 313 O CYS B 323 SHEET 1 AA7 5 ASN C 266 TYR C 267 0 SHEET 2 AA7 5 THR C 181 TRP C 183 -1 N TRP C 183 O ASN C 266 SHEET 3 AA7 5 SER C 200 CYS C 209 -1 O LEU C 206 N LEU C 182 SHEET 4 AA7 5 GLN C 212 VAL C 221 -1 O LEU C 214 N THR C 207 SHEET 5 AA7 5 PHE C 359 ILE C 364 -1 O PHE C 361 N GLY C 215 SHEET 1 AA8 2 ILE C 229 ASN C 230 0 SHEET 2 AA8 2 GLU C 350 VAL C 352 -1 O VAL C 352 N ILE C 229 SHEET 1 AA9 4 GLN C 241 PHE C 248 0 SHEET 2 AA9 4 TYR C 337 LYS C 344 -1 O PHE C 343 N ILE C 242 SHEET 3 AA9 4 PRO C 322 PHE C 329 -1 N ILE C 326 O TYR C 342 SHEET 4 AA9 4 LYS C 308 TYR C 314 -1 N VAL C 313 O CYS C 323 CRYST1 59.580 89.180 106.200 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016784 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009416 0.00000