HEADER MEMBRANE PROTEIN 12-SEP-19 6SU4 TITLE CRYSTAL STRUCTURE OF THE 48C12 HELIORHODOPSIN IN THE BLUE FORM AT PH TITLE 2 4.3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 48C12 HELIORHODOPSIN; COMPND 3 CHAIN: X, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACTINOBACTERIA BACTERIUM; SOURCE 3 ORGANISM_TAXID: 1883427; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HELIORHODOPSIN, RETINAL, TRANSMEMBRANE PROTEIN, RHODOPSIN, MEMBRANE KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,D.VOLKOV,R.ASTASHKIN,A.ALEKSEEV,I.GUSHCHIN,V.GORDELIY REVDAT 5 20-NOV-24 6SU4 1 REMARK REVDAT 4 24-JAN-24 6SU4 1 REMARK REVDAT 3 04-MAR-20 6SU4 1 JRNL REVDAT 2 19-FEB-20 6SU4 1 JRNL REVDAT 1 11-DEC-19 6SU4 0 JRNL AUTH K.KOVALEV,D.VOLKOV,R.ASTASHKIN,A.ALEKSEEV,I.GUSHCHIN, JRNL AUTH 2 J.M.HARO-MORENO,I.CHIZHOV,S.SILETSKY,M.MAMEDOV,A.ROGACHEV, JRNL AUTH 3 T.BALANDIN,V.BORSHCHEVSKIY,A.POPOV,G.BOURENKOV,E.BAMBERG, JRNL AUTH 4 F.RODRIGUEZ-VALERA,G.BULDT,V.GORDELIY JRNL TITL HIGH-RESOLUTION STRUCTURAL INSIGHTS INTO THE HELIORHODOPSIN JRNL TITL 2 FAMILY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 4131 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 32034096 JRNL DOI 10.1073/PNAS.1915888117 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 94710 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4991 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3350 REMARK 3 BIN FREE R VALUE SET COUNT : 330 REMARK 3 BIN FREE R VALUE : 0.3300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 478 REMARK 3 SOLVENT ATOMS : 160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : 0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.707 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4586 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4756 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6131 ; 1.166 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11018 ; 1.250 ; 1.591 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 542 ; 5.664 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;37.945 ;21.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 621 ;13.444 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 556 ; 0.065 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4774 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 952 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292103085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 99767 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4HYJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTALS WERE GROWN USING IN MESO REMARK 280 CRYSTALLIZATION TECHNIQUE. PRECIPITANT: 2.4 M AMSO4; PH 4.3, REMARK 280 LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.37200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: X, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ALA X 2 REMARK 465 LEU X 257 REMARK 465 GLU X 258 REMARK 465 HIS X 259 REMARK 465 HIS X 260 REMARK 465 HIS X 261 REMARK 465 HIS X 262 REMARK 465 HIS X 263 REMARK 465 HIS X 264 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 258 REMARK 465 HIS A 259 REMARK 465 HIS A 260 REMARK 465 HIS A 261 REMARK 465 HIS A 262 REMARK 465 HIS A 263 REMARK 465 HIS A 264 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS X 3 CG CD CE NZ REMARK 470 LYS X 7 CG CD CE NZ REMARK 470 LYS X 10 CD CE NZ REMARK 470 LYS X 90 CD CE NZ REMARK 470 MET X 97 CG SD CE REMARK 470 LYS X 155 CE NZ REMARK 470 LYS X 222 CG CD CE NZ REMARK 470 LYS A 7 CD CE NZ REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 90 CG CD CE NZ REMARK 470 LYS A 155 CE NZ REMARK 470 LYS A 220 CE NZ REMARK 470 LYS A 222 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR X 52 -120.83 -100.93 REMARK 500 THR A 52 -117.89 -114.19 REMARK 500 LYS A 155 3.93 82.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA X 602 REMARK 610 OLC X 604 REMARK 610 OLC X 605 REMARK 610 LFA X 606 REMARK 610 LFA X 607 REMARK 610 LFA X 608 REMARK 610 LFA X 609 REMARK 610 LFA X 610 REMARK 610 LFA X 611 REMARK 610 LFA X 612 REMARK 610 LFA X 613 REMARK 610 LFA X 614 REMARK 610 LFA X 615 REMARK 610 LFA X 618 REMARK 610 LFA X 619 REMARK 610 OLA A 705 REMARK 610 LFA A 707 REMARK 610 LFA A 708 REMARK 610 LFA A 709 REMARK 610 LFA A 710 REMARK 610 LFA A 711 REMARK 610 LFA A 713 REMARK 610 LFA A 714 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT X 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA X 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL X 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC X 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC X 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 611 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 612 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 613 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 614 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 615 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 616 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 617 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 618 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA X 619 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 X 620 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET X 621 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide RET A 716 and LYS A REMARK 800 241 DBREF 6SU4 X 1 264 PDB 6SU4 6SU4 1 264 DBREF 6SU4 A 1 264 PDB 6SU4 6SU4 1 264 SEQRES 1 X 264 MET ALA LYS PRO THR VAL LYS GLU ILE LYS SER LEU GLN SEQRES 2 X 264 ASN PHE ASN ARG ILE ALA GLY VAL PHE HIS LEU LEU GLN SEQRES 3 X 264 MET LEU ALA VAL LEU ALA LEU ALA ASN ASP PHE ALA LEU SEQRES 4 X 264 PRO MET THR GLY THR TYR LEU ASN GLY PRO PRO GLY THR SEQRES 5 X 264 THR PHE SER ALA PRO VAL VAL ILE LEU GLU THR PRO VAL SEQRES 6 X 264 GLY LEU ALA VAL ALA LEU PHE LEU GLY LEU SER ALA LEU SEQRES 7 X 264 PHE HIS PHE ILE VAL SER SER GLY ASN PHE PHE LYS ARG SEQRES 8 X 264 TYR SER ALA SER LEU MET LYS ASN GLN ASN ILE PHE ARG SEQRES 9 X 264 TRP VAL GLU TYR SER LEU SER SER SER VAL MET ILE VAL SEQRES 10 X 264 LEU ILE ALA GLN ILE CYS GLY ILE ALA ASP ILE VAL ALA SEQRES 11 X 264 LEU LEU ALA ILE PHE GLY VAL ASN ALA SER MET ILE LEU SEQRES 12 X 264 PHE GLY TRP LEU GLN GLU LYS TYR THR GLN PRO LYS ASP SEQRES 13 X 264 GLY ASP LEU LEU PRO PHE TRP PHE GLY CYS ILE ALA GLY SEQRES 14 X 264 ILE VAL PRO TRP ILE GLY LEU LEU ILE TYR VAL ILE ALA SEQRES 15 X 264 PRO GLY SER THR SER ASP VAL ALA VAL PRO GLY PHE VAL SEQRES 16 X 264 TYR GLY ILE ILE ILE SER LEU PHE LEU PHE PHE ASN SER SEQRES 17 X 264 PHE ALA LEU VAL GLN TYR LEU GLN TYR LYS GLY LYS GLY SEQRES 18 X 264 LYS TRP SER ASN TYR LEU ARG GLY GLU ARG ALA TYR ILE SEQRES 19 X 264 VAL LEU SER LEU VAL ALA LYS SER ALA LEU ALA TRP GLN SEQRES 20 X 264 ILE PHE SER GLY THR LEU ILE PRO ALA LEU GLU HIS HIS SEQRES 21 X 264 HIS HIS HIS HIS SEQRES 1 A 264 MET ALA LYS PRO THR VAL LYS GLU ILE LYS SER LEU GLN SEQRES 2 A 264 ASN PHE ASN ARG ILE ALA GLY VAL PHE HIS LEU LEU GLN SEQRES 3 A 264 MET LEU ALA VAL LEU ALA LEU ALA ASN ASP PHE ALA LEU SEQRES 4 A 264 PRO MET THR GLY THR TYR LEU ASN GLY PRO PRO GLY THR SEQRES 5 A 264 THR PHE SER ALA PRO VAL VAL ILE LEU GLU THR PRO VAL SEQRES 6 A 264 GLY LEU ALA VAL ALA LEU PHE LEU GLY LEU SER ALA LEU SEQRES 7 A 264 PHE HIS PHE ILE VAL SER SER GLY ASN PHE PHE LYS ARG SEQRES 8 A 264 TYR SER ALA SER LEU MET LYS ASN GLN ASN ILE PHE ARG SEQRES 9 A 264 TRP VAL GLU TYR SER LEU SER SER SER VAL MET ILE VAL SEQRES 10 A 264 LEU ILE ALA GLN ILE CYS GLY ILE ALA ASP ILE VAL ALA SEQRES 11 A 264 LEU LEU ALA ILE PHE GLY VAL ASN ALA SER MET ILE LEU SEQRES 12 A 264 PHE GLY TRP LEU GLN GLU LYS TYR THR GLN PRO LYS ASP SEQRES 13 A 264 GLY ASP LEU LEU PRO PHE TRP PHE GLY CYS ILE ALA GLY SEQRES 14 A 264 ILE VAL PRO TRP ILE GLY LEU LEU ILE TYR VAL ILE ALA SEQRES 15 A 264 PRO GLY SER THR SER ASP VAL ALA VAL PRO GLY PHE VAL SEQRES 16 A 264 TYR GLY ILE ILE ILE SER LEU PHE LEU PHE PHE ASN SER SEQRES 17 A 264 PHE ALA LEU VAL GLN TYR LEU GLN TYR LYS GLY LYS GLY SEQRES 18 A 264 LYS TRP SER ASN TYR LEU ARG GLY GLU ARG ALA TYR ILE SEQRES 19 A 264 VAL LEU SER LEU VAL ALA LYS SER ALA LEU ALA TRP GLN SEQRES 20 A 264 ILE PHE SER GLY THR LEU ILE PRO ALA LEU GLU HIS HIS SEQRES 21 A 264 HIS HIS HIS HIS HET ACT X 601 4 HET OLA X 602 15 HET GOL X 603 6 HET OLC X 604 24 HET OLC X 605 24 HET LFA X 606 9 HET LFA X 607 12 HET LFA X 608 13 HET LFA X 609 17 HET LFA X 610 13 HET LFA X 611 7 HET LFA X 612 12 HET LFA X 613 8 HET LFA X 614 4 HET LFA X 615 13 HET LFA X 616 20 HET LFA X 617 20 HET LFA X 618 8 HET LFA X 619 11 HET SO4 X 620 5 HET RET X 621 20 HET ACT A 701 4 HET OLC A 702 25 HET OLC A 703 25 HET OLA A 704 20 HET OLA A 705 14 HET LFA A 706 20 HET LFA A 707 7 HET LFA A 708 12 HET LFA A 709 12 HET LFA A 710 7 HET LFA A 711 9 HET LFA A 712 20 HET LFA A 713 9 HET LFA A 714 4 HET SO4 A 715 5 HET RET A 716 20 HETNAM ACT ACETATE ION HETNAM OLA OLEIC ACID HETNAM GOL GLYCEROL HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM LFA EICOSANE HETNAM SO4 SULFATE ION HETNAM RET RETINAL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN LFA LIPID FRAGMENT FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 4 OLA 3(C18 H34 O2) FORMUL 5 GOL C3 H8 O3 FORMUL 6 OLC 4(C21 H40 O4) FORMUL 8 LFA 23(C20 H42) FORMUL 22 SO4 2(O4 S 2-) FORMUL 23 RET 2(C20 H28 O) FORMUL 40 HOH *160(H2 O) HELIX 1 AA1 THR X 5 ALA X 34 1 30 HELIX 2 AA2 VAL X 65 SER X 85 1 21 HELIX 3 AA3 PHE X 88 LYS X 98 1 11 HELIX 4 AA4 ASN X 101 CYS X 123 1 23 HELIX 5 AA5 ASP X 127 THR X 152 1 26 HELIX 6 AA6 LEU X 159 ALA X 182 1 24 HELIX 7 AA7 PRO X 192 GLY X 219 1 28 HELIX 8 AA8 LYS X 220 SER X 224 5 5 HELIX 9 AA9 ASN X 225 LEU X 253 1 29 HELIX 10 AB1 THR A 5 ALA A 34 1 30 HELIX 11 AB2 VAL A 65 SER A 85 1 21 HELIX 12 AB3 PHE A 88 LYS A 98 1 11 HELIX 13 AB4 ASN A 101 CYS A 123 1 23 HELIX 14 AB5 ASP A 127 THR A 152 1 26 HELIX 15 AB6 LEU A 159 ALA A 182 1 24 HELIX 16 AB7 PRO A 192 GLY A 219 1 28 HELIX 17 AB8 LYS A 220 SER A 224 5 5 HELIX 18 AB9 ASN A 225 LEU A 253 1 29 SHEET 1 AA1 2 ALA X 38 GLY X 43 0 SHEET 2 AA1 2 VAL X 58 PRO X 64 -1 O THR X 63 N LEU X 39 SHEET 1 AA2 2 ALA A 38 GLY A 43 0 SHEET 2 AA2 2 VAL A 58 PRO A 64 -1 O THR A 63 N LEU A 39 LINK NZ LYS X 241 C15 RET X 621 1555 1555 1.45 LINK NZ LYS A 241 C15 RET A 716 1555 1555 1.45 SITE 1 AC1 4 PHE X 79 HIS X 80 GLU X 107 HOH X 735 SITE 1 AC2 2 ARG X 17 SER X 84 SITE 1 AC3 2 GLY X 86 ASN X 87 SITE 1 AC4 2 ASN X 14 ARG X 17 SITE 1 AC5 11 SER A 109 PHE A 135 LYS A 150 GLY X 157 SITE 2 AC5 11 ASP X 158 LEU X 159 LEU X 160 TRP X 163 SITE 3 AC5 11 PHE X 164 LFA X 617 LFA X 619 SITE 1 AC6 1 TRP X 246 SITE 1 AC7 3 LEU X 78 SER X 85 LFA X 613 SITE 1 AC8 1 ILE X 60 SITE 1 AC9 1 PHE X 135 SITE 1 AD1 3 ILE A 167 SER X 109 PHE X 135 SITE 1 AD2 2 VAL X 117 LFA X 618 SITE 1 AD3 1 LEU X 25 SITE 1 AD4 3 MET X 27 LEU X 71 LFA X 607 SITE 1 AD5 3 GLN X 26 TRP X 246 PHE X 249 SITE 1 AD6 2 GLY X 193 PHE X 194 SITE 1 AD7 7 GLY X 169 TRP X 173 PHE X 203 PHE X 206 SITE 2 AD7 7 ASN X 207 ALA X 210 TYR X 214 SITE 1 AD8 4 TRP X 163 ILE X 167 ASN X 207 OLC X 605 SITE 1 AD9 3 LEU X 61 GLU X 62 LFA X 611 SITE 1 AE1 1 OLC X 605 SITE 1 AE2 4 LYS X 98 GLN X 100 LYS X 150 HOH X 728 SITE 1 AE3 10 SER X 111 SER X 112 MET X 115 MET X 141 SITE 2 AE3 10 GLY X 165 PHE X 206 PHE X 209 ALA X 210 SITE 3 AE3 10 GLN X 213 LYS X 241 SITE 1 AE4 4 PHE A 79 HIS A 80 GLU A 107 HOH A 825 SITE 1 AE5 5 VAL A 180 TYR A 196 ILE A 199 ILE A 200 SITE 2 AE5 5 HOH A 857 SITE 1 AE6 3 PRO A 192 GLY A 193 OLA A 704 SITE 1 AE7 4 LEU A 204 PHE A 205 LEU A 236 OLC A 703 SITE 1 AE8 1 ILE A 60 SITE 1 AE9 3 LEU A 61 GLU A 62 PHE A 135 SITE 1 AF1 1 VAL A 117 SITE 1 AF2 2 TRP A 163 ILE A 167 SITE 1 AF3 3 ILE A 18 VAL A 21 LEU A 25 SITE 1 AF4 1 MET A 27 SITE 1 AF5 8 PHE A 162 GLY A 169 TRP A 173 PHE A 203 SITE 2 AF5 8 PHE A 206 ASN A 207 ALA A 210 TYR A 214 SITE 1 AF6 3 GLN A 26 TRP A 246 PHE A 249 SITE 1 AF7 3 LYS A 98 GLN A 100 LYS A 150 SITE 1 AF8 20 HIS A 23 PHE A 72 SER A 76 GLU A 107 SITE 2 AF8 20 SER A 111 SER A 112 MET A 115 MET A 141 SITE 3 AF8 20 PHE A 206 PHE A 209 ALA A 210 GLN A 213 SITE 4 AF8 20 SER A 237 LEU A 238 VAL A 239 ALA A 240 SITE 5 AF8 20 SER A 242 ALA A 243 LEU A 244 ALA A 245 CRYST1 56.177 60.744 92.913 90.00 92.02 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017801 0.000000 0.000628 0.00000 SCALE2 0.000000 0.016463 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010769 0.00000