HEADER ANTIMICROBIAL PROTEIN 16-SEP-19 6SUM TITLE AMICOUMACIN KINASE HAMIN IN COMPLEX WITH AMP-PNP, MG2+ AND AMI COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMICOUMACIN KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.230; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ALTITUDINIS; SOURCE 3 ORGANISM_TAXID: 293387; SOURCE 4 GENE: BW16_03450; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIMICROBIAL PROTEIN, KINASE, AMICOUMACIN EXPDTA X-RAY DIFFRACTION AUTHOR G.P.BOURENKOV,Y.A.MOKRUSHINA,S.S.TEREKHOV,I.V.SMIRNOV,A.G.GABIBOV, AUTHOR 2 S.ALTMAN REVDAT 2 15-MAY-24 6SUM 1 LINK REVDAT 1 22-JUL-20 6SUM 0 JRNL AUTH S.S.TEREKHOV,Y.A.MOKRUSHINA,A.S.NAZAROV,A.ZLOBIN,A.ZALEVSKY, JRNL AUTH 2 G.BOURENKOV,A.GOLOVIN,A.BELOGUROV JR.,I.A.OSTERMAN, JRNL AUTH 3 A.A.KULIKOVA,V.A.MITKEVICH,H.J.LOU,B.E.TURK,M.WILMANNS, JRNL AUTH 4 I.V.SMIRNOV,S.ALTMAN,A.G.GABIBOV JRNL TITL A KINASE BIOSCAVENGER PROVIDES ANTIBIOTIC RESISTANCE BY JRNL TITL 2 EXTREMELY TIGHT SUBSTRATE BINDING. JRNL REF SCI ADV V. 6 Z9861 2020 JRNL REFN ESSN 2375-2548 JRNL PMID 32637600 JRNL DOI 10.1126/SCIADV.AAZ9861 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 161039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 8575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11579 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE SET COUNT : 620 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5559 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 131 REMARK 3 SOLVENT ATOMS : 794 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : -0.13000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.04000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : -0.13000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.051 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.050 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.775 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5988 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5552 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8162 ; 1.535 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12790 ; 1.077 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 713 ; 5.580 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 305 ;35.804 ;23.803 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1033 ;12.515 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;20.916 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 857 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6737 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1480 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11540 ; 2.562 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 471 ;23.002 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 11683 ; 8.154 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104341. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : KB MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 177497 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 12.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 6.850 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.07 REMARK 200 R MERGE FOR SHELL (I) : 1.09100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH6.5 0.2 M NAOAC 27-29% REMARK 280 (W/V) PEG 2000MME 2 MM AMIA 2.2 MM AMP-PNP 20 MM MG2+, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 HIS B 212 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 213 CG CD OE1 NE2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 793 O HOH B 803 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 35 -85.22 -76.70 REMARK 500 THR A 55 -157.55 -140.37 REMARK 500 ASP A 203 47.72 -154.28 REMARK 500 ALA B 35 -81.34 -78.49 REMARK 500 THR B 55 -157.39 -142.70 REMARK 500 ASP B 203 45.05 -154.97 REMARK 500 HIS B 212 -83.23 -124.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN B 213 GLY B 214 -146.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 208 OD1 REMARK 620 2 ASP A 220 OD2 93.1 REMARK 620 3 ANP A 403 O2A 104.7 98.4 REMARK 620 4 ANP A 403 O1G 110.2 92.0 142.9 REMARK 620 5 ANP A 403 N3B 173.6 87.3 81.5 63.5 REMARK 620 6 HOH A 665 O 94.2 172.4 82.2 83.2 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 ASP A 220 OD2 60.6 REMARK 620 3 ANP A 403 O2G 155.8 95.3 REMARK 620 4 ANP A 403 O2B 88.3 90.6 90.3 REMARK 620 5 HOH A 564 O 89.0 88.1 92.1 177.3 REMARK 620 6 HOH A 574 O 103.1 163.0 101.0 93.8 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 405 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 763 O REMARK 620 2 HOH A 838 O 90.1 REMARK 620 3 HOH B 506 O 90.4 179.5 REMARK 620 4 HOH B 516 O 179.0 89.8 89.6 REMARK 620 5 HOH B 557 O 90.6 90.8 89.2 90.4 REMARK 620 6 HOH B 872 O 88.6 88.9 91.0 90.5 179.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 208 OD1 REMARK 620 2 ASP B 220 OD2 92.1 REMARK 620 3 ANP B 403 N3B 174.4 84.8 REMARK 620 4 ANP B 403 O2G 112.6 89.0 62.8 REMARK 620 5 ANP B 403 O1A 104.7 96.0 80.2 142.2 REMARK 620 6 HOH B 689 O 95.4 172.0 87.4 85.7 84.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 220 OD1 REMARK 620 2 ASP B 220 OD2 59.1 REMARK 620 3 ANP B 403 O1G 155.1 96.1 REMARK 620 4 ANP B 403 O2B 87.3 90.7 91.3 REMARK 620 5 HOH B 538 O 88.4 87.3 92.7 175.7 REMARK 620 6 HOH B 546 O 105.0 163.1 99.9 94.4 86.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UAM A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UAM B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 405 DBREF 6SUM A 1 335 PDB 6SUM 6SUM 1 335 DBREF 6SUM B 1 335 PDB 6SUM 6SUM 1 335 SEQRES 1 A 335 MET HIS LYS GLU VAL LYS ALA ARG TYR ASP GLU GLN MET SEQRES 2 A 335 VAL LEU LYS LYS ALA ALA LEU LEU TYR HIS PHE GLN PRO SEQRES 3 A 335 GLU GLN VAL THR PHE LEU ALA ASP ALA GLU ASN TYR VAL SEQRES 4 A 335 TYR GLU TYR THR ASP GLU LYS GLY SER SER TYR ILE LEU SEQRES 5 A 335 LYS ILE THR HIS THR ILE ARG ARG SER SER THR TYR ILE SEQRES 6 A 335 LEU GLY GLU MET ASP TRP ILE ARG TYR LEU SER GLN HIS SEQRES 7 A 335 GLY ILE SER VAL ALA LYS PRO VAL LEU SER ALA ARG GLY SEQRES 8 A 335 LYS ASP VAL GLU ALA ILE PRO ASP GLN ALA GLY GLY ALA SEQRES 9 A 335 PHE LEU LEU ARG VAL TYR GLU LYS ALA PRO GLY ARG LYS SEQRES 10 A 335 VAL THR GLU ALA ASP TRP ASN GLY GLN LEU PHE GLN ALA SEQRES 11 A 335 LEU GLY ALA TYR THR GLY ARG MET HIS GLN THR THR LYS SEQRES 12 A 335 GLN TYR GLN VAL LYS ASP PRO ARG TYR LYS ARG GLN GLU SEQRES 13 A 335 TRP TYR GLU GLU GLU GLN LEU LYS LEU GLU THR TYR ILE SEQRES 14 A 335 PRO SER ASP GLN THR VAL VAL LEU GLN ARG LYS ASP GLU SEQRES 15 A 335 LEU MET GLN LYS LEU HIS GLN LEU ARG ILE SER LYS ASP SEQRES 16 A 335 VAL TYR GLY LEU VAL HIS ALA ASP LEU HIS HIS GLY ASN SEQRES 17 A 335 PHE HIS TYR HIS GLN GLY GLU ILE ILE ALA PHE ASP PHE SEQRES 18 A 335 ASP ASP CYS GLY TYR HIS TRP PHE ILE ASN ASP ILE SER SEQRES 19 A 335 ILE LEU LEU TYR ASN VAL LEU TRP TYR PRO VAL ILE PRO SEQRES 20 A 335 TYR GLU ASP LYS ALA GLU PHE THR GLY GLU PHE MET SER SEQRES 21 A 335 HIS PHE LEU LYS GLY TYR ARG GLN GLU ASN GLU LEU ASP SEQRES 22 A 335 ASP ALA TRP LEU ALA THR ILE PRO ASP PHE LEU MET LEU SEQRES 23 A 335 ARG HIS MET LEU ILE TYR GLY LEU LEU HIS GLN ALA PHE SEQRES 24 A 335 ASP LEU ARG THR LEU SER ALA ASP GLU SER ALA MET LEU SEQRES 25 A 335 ALA ARG PHE ARG LYS GLU ILE GLU ASP LYS THR PRO ILE SEQRES 26 A 335 THR PRO PHE ASP PHE HIS GLN LEU THR THR SEQRES 1 B 335 MET HIS LYS GLU VAL LYS ALA ARG TYR ASP GLU GLN MET SEQRES 2 B 335 VAL LEU LYS LYS ALA ALA LEU LEU TYR HIS PHE GLN PRO SEQRES 3 B 335 GLU GLN VAL THR PHE LEU ALA ASP ALA GLU ASN TYR VAL SEQRES 4 B 335 TYR GLU TYR THR ASP GLU LYS GLY SER SER TYR ILE LEU SEQRES 5 B 335 LYS ILE THR HIS THR ILE ARG ARG SER SER THR TYR ILE SEQRES 6 B 335 LEU GLY GLU MET ASP TRP ILE ARG TYR LEU SER GLN HIS SEQRES 7 B 335 GLY ILE SER VAL ALA LYS PRO VAL LEU SER ALA ARG GLY SEQRES 8 B 335 LYS ASP VAL GLU ALA ILE PRO ASP GLN ALA GLY GLY ALA SEQRES 9 B 335 PHE LEU LEU ARG VAL TYR GLU LYS ALA PRO GLY ARG LYS SEQRES 10 B 335 VAL THR GLU ALA ASP TRP ASN GLY GLN LEU PHE GLN ALA SEQRES 11 B 335 LEU GLY ALA TYR THR GLY ARG MET HIS GLN THR THR LYS SEQRES 12 B 335 GLN TYR GLN VAL LYS ASP PRO ARG TYR LYS ARG GLN GLU SEQRES 13 B 335 TRP TYR GLU GLU GLU GLN LEU LYS LEU GLU THR TYR ILE SEQRES 14 B 335 PRO SER ASP GLN THR VAL VAL LEU GLN ARG LYS ASP GLU SEQRES 15 B 335 LEU MET GLN LYS LEU HIS GLN LEU ARG ILE SER LYS ASP SEQRES 16 B 335 VAL TYR GLY LEU VAL HIS ALA ASP LEU HIS HIS GLY ASN SEQRES 17 B 335 PHE HIS TYR HIS GLN GLY GLU ILE ILE ALA PHE ASP PHE SEQRES 18 B 335 ASP ASP CYS GLY TYR HIS TRP PHE ILE ASN ASP ILE SER SEQRES 19 B 335 ILE LEU LEU TYR ASN VAL LEU TRP TYR PRO VAL ILE PRO SEQRES 20 B 335 TYR GLU ASP LYS ALA GLU PHE THR GLY GLU PHE MET SER SEQRES 21 B 335 HIS PHE LEU LYS GLY TYR ARG GLN GLU ASN GLU LEU ASP SEQRES 22 B 335 ASP ALA TRP LEU ALA THR ILE PRO ASP PHE LEU MET LEU SEQRES 23 B 335 ARG HIS MET LEU ILE TYR GLY LEU LEU HIS GLN ALA PHE SEQRES 24 B 335 ASP LEU ARG THR LEU SER ALA ASP GLU SER ALA MET LEU SEQRES 25 B 335 ALA ARG PHE ARG LYS GLU ILE GLU ASP LYS THR PRO ILE SEQRES 26 B 335 THR PRO PHE ASP PHE HIS GLN LEU THR THR HET MG A 401 1 HET MG A 402 1 HET ANP A 403 31 HET UAM A 404 30 HET ACT A 405 4 HET MG B 401 1 HET MG B 402 1 HET ANP B 403 31 HET UAM B 404 30 HET MG B 405 1 HETNAM MG MAGNESIUM ION HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM UAM AMICOUMACIN A HETNAM ACT ACETATE ION FORMUL 3 MG 5(MG 2+) FORMUL 5 ANP 2(C10 H17 N6 O12 P3) FORMUL 6 UAM 2(C20 H29 N3 O7) FORMUL 7 ACT C2 H3 O2 1- FORMUL 13 HOH *794(H2 O) HELIX 1 AA1 HIS A 2 ALA A 7 1 6 HELIX 2 AA2 ASP A 10 HIS A 23 1 14 HELIX 3 AA3 GLN A 25 VAL A 29 5 5 HELIX 4 AA4 SER A 61 HIS A 78 1 18 HELIX 5 AA5 THR A 119 TRP A 123 5 5 HELIX 6 AA6 ASN A 124 LYS A 143 1 20 HELIX 7 AA7 ASP A 149 LYS A 153 5 5 HELIX 8 AA8 GLU A 156 LEU A 163 5 8 HELIX 9 AA9 LYS A 164 ILE A 169 1 6 HELIX 10 AB1 GLN A 173 HIS A 188 1 16 HELIX 11 AB2 PHE A 229 TYR A 243 1 15 HELIX 12 AB3 ASP A 250 ASN A 270 1 21 HELIX 13 AB4 ASP A 273 ALA A 278 5 6 HELIX 14 AB5 THR A 279 PHE A 299 1 21 HELIX 15 AB6 SER A 305 LYS A 322 1 18 HELIX 16 AB7 ASP A 329 THR A 334 5 6 HELIX 17 AB8 HIS B 2 TYR B 9 1 8 HELIX 18 AB9 ASP B 10 HIS B 23 1 14 HELIX 19 AC1 GLN B 25 VAL B 29 5 5 HELIX 20 AC2 SER B 61 HIS B 78 1 18 HELIX 21 AC3 THR B 119 TRP B 123 5 5 HELIX 22 AC4 ASN B 124 LYS B 143 1 20 HELIX 23 AC5 ASP B 149 LYS B 153 5 5 HELIX 24 AC6 GLU B 156 LEU B 163 5 8 HELIX 25 AC7 LYS B 164 ILE B 169 1 6 HELIX 26 AC8 GLN B 173 GLN B 189 1 17 HELIX 27 AC9 PHE B 229 TYR B 243 1 15 HELIX 28 AD1 ASP B 250 GLN B 268 1 19 HELIX 29 AD2 ASP B 273 ALA B 278 5 6 HELIX 30 AD3 THR B 279 PHE B 299 1 21 HELIX 31 AD4 SER B 305 LYS B 322 1 18 HELIX 32 AD5 ASP B 329 THR B 334 5 6 SHEET 1 AA1 5 THR A 30 ALA A 33 0 SHEET 2 AA1 5 TYR A 38 THR A 43 -1 O VAL A 39 N LEU A 32 SHEET 3 AA1 5 SER A 49 HIS A 56 -1 O ILE A 54 N TYR A 38 SHEET 4 AA1 5 ALA A 104 GLU A 111 -1 O ARG A 108 N LYS A 53 SHEET 5 AA1 5 PRO A 85 VAL A 86 -1 N VAL A 86 O VAL A 109 SHEET 1 AA2 5 THR A 30 ALA A 33 0 SHEET 2 AA2 5 TYR A 38 THR A 43 -1 O VAL A 39 N LEU A 32 SHEET 3 AA2 5 SER A 49 HIS A 56 -1 O ILE A 54 N TYR A 38 SHEET 4 AA2 5 ALA A 104 GLU A 111 -1 O ARG A 108 N LYS A 53 SHEET 5 AA2 5 GLU A 95 PRO A 98 -1 N GLU A 95 O LEU A 107 SHEET 1 AA3 2 TYR A 197 VAL A 200 0 SHEET 2 AA3 2 GLY A 225 TRP A 228 -1 O GLY A 225 N VAL A 200 SHEET 1 AA4 2 PHE A 209 HIS A 212 0 SHEET 2 AA4 2 GLU A 215 ALA A 218 -1 O GLU A 215 N HIS A 212 SHEET 1 AA5 5 THR B 30 ALA B 33 0 SHEET 2 AA5 5 TYR B 38 THR B 43 -1 O VAL B 39 N LEU B 32 SHEET 3 AA5 5 SER B 49 HIS B 56 -1 O ILE B 54 N TYR B 38 SHEET 4 AA5 5 ALA B 104 GLU B 111 -1 O TYR B 110 N ILE B 51 SHEET 5 AA5 5 PRO B 85 VAL B 86 -1 N VAL B 86 O VAL B 109 SHEET 1 AA6 5 THR B 30 ALA B 33 0 SHEET 2 AA6 5 TYR B 38 THR B 43 -1 O VAL B 39 N LEU B 32 SHEET 3 AA6 5 SER B 49 HIS B 56 -1 O ILE B 54 N TYR B 38 SHEET 4 AA6 5 ALA B 104 GLU B 111 -1 O TYR B 110 N ILE B 51 SHEET 5 AA6 5 GLU B 95 PRO B 98 -1 N ILE B 97 O PHE B 105 SHEET 1 AA7 2 TYR B 197 VAL B 200 0 SHEET 2 AA7 2 GLY B 225 TRP B 228 -1 O GLY B 225 N VAL B 200 SHEET 1 AA8 2 PHE B 209 TYR B 211 0 SHEET 2 AA8 2 ILE B 216 ALA B 218 -1 O ILE B 217 N HIS B 210 LINK OD1 ASN A 208 MG MG A 402 1555 1555 2.02 LINK OD1 ASP A 220 MG MG A 401 1555 1555 2.25 LINK OD2 ASP A 220 MG MG A 401 1555 1555 2.14 LINK OD2 ASP A 220 MG MG A 402 1555 1555 2.09 LINK MG MG A 401 O2G ANP A 403 1555 1555 1.99 LINK MG MG A 401 O2B ANP A 403 1555 1555 2.03 LINK MG MG A 401 O HOH A 564 1555 1555 2.10 LINK MG MG A 401 O HOH A 574 1555 1555 2.07 LINK MG MG A 402 O2A ANP A 403 1555 1555 1.91 LINK MG MG A 402 O1G ANP A 403 1555 1555 1.95 LINK MG MG A 402 N3B ANP A 403 1555 1555 2.74 LINK MG MG A 402 O HOH A 665 1555 1555 2.30 LINK O HOH A 763 MG MG B 405 1555 1555 2.13 LINK O HOH A 838 MG MG B 405 1555 1555 2.13 LINK OD1 ASN B 208 MG MG B 402 1555 1555 2.05 LINK OD1 ASP B 220 MG MG B 401 1555 1555 2.25 LINK OD2 ASP B 220 MG MG B 401 1555 1555 2.17 LINK OD2 ASP B 220 MG MG B 402 1555 1555 2.15 LINK MG MG B 401 O1G ANP B 403 1555 1555 1.97 LINK MG MG B 401 O2B ANP B 403 1555 1555 2.04 LINK MG MG B 401 O HOH B 538 1555 1555 2.13 LINK MG MG B 401 O HOH B 546 1555 1555 2.01 LINK MG MG B 402 N3B ANP B 403 1555 1555 2.87 LINK MG MG B 402 O2G ANP B 403 1555 1555 1.95 LINK MG MG B 402 O1A ANP B 403 1555 1555 1.95 LINK MG MG B 402 O HOH B 689 1555 1555 2.26 LINK MG MG B 405 O HOH B 506 1555 1555 2.13 LINK MG MG B 405 O HOH B 516 1555 1555 2.13 LINK MG MG B 405 O HOH B 557 1555 1555 2.19 LINK MG MG B 405 O HOH B 872 1555 1555 2.16 SITE 1 AC1 4 ASP A 220 ANP A 403 HOH A 564 HOH A 574 SITE 1 AC2 4 ASN A 208 ASP A 220 ANP A 403 HOH A 665 SITE 1 AC3 33 ALA A 35 GLU A 36 ASN A 37 VAL A 39 SITE 2 AC3 33 ILE A 51 LYS A 53 ALA A 83 GLU A 111 SITE 3 AC3 33 LYS A 112 ALA A 113 LYS A 117 ASP A 203 SITE 4 AC3 33 HIS A 205 GLY A 207 ASN A 208 HIS A 210 SITE 5 AC3 33 PHE A 219 ASP A 220 MG A 401 MG A 402 SITE 6 AC3 33 UAM A 404 HOH A 517 HOH A 564 HOH A 574 SITE 7 AC3 33 HOH A 578 HOH A 587 HOH A 594 HOH A 608 SITE 8 AC3 33 HOH A 635 HOH A 665 HOH A 693 HOH A 784 SITE 9 AC3 33 HOH A 790 SITE 1 AC4 19 GLU A 36 GLU A 160 GLN A 162 ASP A 203 SITE 2 AC4 19 HIS A 205 HIS A 206 GLY A 207 ASP A 223 SITE 3 AC4 19 ASN A 239 TRP A 242 ARG A 287 ILE A 291 SITE 4 AC4 19 LEU A 294 ANP A 403 HOH A 566 HOH A 578 SITE 5 AC4 19 HOH A 598 HOH A 688 HOH A 759 SITE 1 AC5 7 PRO A 170 GLN A 173 TYR A 292 HIS A 296 SITE 2 AC5 7 LEU A 301 HOH A 599 HOH B 570 SITE 1 AC6 4 ASP B 220 ANP B 403 HOH B 538 HOH B 546 SITE 1 AC7 4 ASN B 208 ASP B 220 ANP B 403 HOH B 689 SITE 1 AC8 31 ALA B 35 GLU B 36 ASN B 37 VAL B 39 SITE 2 AC8 31 ILE B 51 LYS B 53 ALA B 83 GLU B 111 SITE 3 AC8 31 LYS B 112 ALA B 113 ASP B 203 HIS B 205 SITE 4 AC8 31 GLY B 207 ASN B 208 HIS B 210 PHE B 219 SITE 5 AC8 31 ASP B 220 MG B 401 MG B 402 UAM B 404 SITE 6 AC8 31 HOH B 503 HOH B 538 HOH B 546 HOH B 558 SITE 7 AC8 31 HOH B 619 HOH B 631 HOH B 671 HOH B 689 SITE 8 AC8 31 HOH B 710 HOH B 748 HOH B 777 SITE 1 AC9 19 GLU B 36 GLU B 160 GLN B 162 ASP B 203 SITE 2 AC9 19 HIS B 205 HIS B 206 GLY B 207 ASP B 223 SITE 3 AC9 19 ASN B 239 TRP B 242 ILE B 291 LEU B 294 SITE 4 AC9 19 ANP B 403 HOH B 520 HOH B 558 HOH B 573 SITE 5 AC9 19 HOH B 676 HOH B 708 HOH B 807 SITE 1 AD1 6 HOH A 763 HOH A 838 HOH B 506 HOH B 516 SITE 2 AD1 6 HOH B 557 HOH B 872 CRYST1 50.660 66.000 70.410 112.29 102.81 94.79 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019739 0.001653 0.005661 0.00000 SCALE2 0.000000 0.015205 0.006822 0.00000 SCALE3 0.000000 0.000000 0.015964 0.00000