HEADER ANTIBIOTIC 19-SEP-19 6SW2 TITLE CRYSTAL STRUCTURE OF P. AERUGINOSA PQSL IN COMPLEX WITH 2- TITLE 2 AMINOBENZOYLACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE FAD-DEPENDENT MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / DSM SOURCE 3 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 GENE: PQSL, PA4190; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: LMG194 KEYWDS OXIDOREDUCTASE, PHOTOCATALYSIS, FAD, NAD(P), BIOSYNTHETIC PATHWAY, KEYWDS 2 ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR A.MATTEVI,S.ROVIDA REVDAT 3 24-JAN-24 6SW2 1 REMARK REVDAT 2 10-JUN-20 6SW2 1 JRNL REVDAT 1 03-JUN-20 6SW2 0 JRNL AUTH S.ERNST,S.ROVIDA,A.MATTEVI,S.FETZNER,S.L.DREES JRNL TITL PHOTOINDUCED MONOOXYGENATION INVOLVING NAD(P)H-FAD JRNL TITL 2 SEQUENTIAL SINGLE-ELECTRON TRANSFER. JRNL REF NAT COMMUN V. 11 2600 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32451409 JRNL DOI 10.1038/S41467-020-16450-Y REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 40904 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2143 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2993 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.3120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 135 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -1.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.769 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3067 ; 0.012 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2735 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4137 ; 1.567 ; 1.708 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6396 ; 0.991 ; 1.685 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 369 ; 6.503 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 193 ;27.206 ;19.275 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 487 ;14.226 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 43 ;19.490 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 375 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3486 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 551 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES - REFINED INDIVIDUALLY REMARK 4 REMARK 4 6SW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.966000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43115 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 45.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 1.41900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2X3N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20,000 (5-10 % W/V), MES BUFFER PH REMARK 280 6.5., VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.53950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.05050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.99200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.05050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.53950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.99200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 371 REMARK 465 LEU A 372 REMARK 465 GLN A 373 REMARK 465 GLY A 374 REMARK 465 SER A 375 REMARK 465 SER A 376 REMARK 465 ARG A 377 REMARK 465 THR A 378 REMARK 465 PRO A 379 REMARK 465 GLU A 380 REMARK 465 ALA A 381 REMARK 465 LEU A 382 REMARK 465 GLY A 383 REMARK 465 GLY A 384 REMARK 465 GLU A 385 REMARK 465 ARG A 386 REMARK 465 SER A 387 REMARK 465 TYR A 388 REMARK 465 GLN A 389 REMARK 465 PRO A 390 REMARK 465 VAL A 391 REMARK 465 ARG A 392 REMARK 465 SER A 393 REMARK 465 PRO A 394 REMARK 465 ALA A 395 REMARK 465 PRO A 396 REMARK 465 LEU A 397 REMARK 465 GLY A 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 148 NH1 ARG A 150 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 4 C HIS A 5 N 0.274 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 4 O - C - N ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 199 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 41 106.37 -45.92 REMARK 500 ASN A 44 142.10 72.74 REMARK 500 HIS A 75 16.22 -142.74 REMARK 500 VAL A 94 -54.89 -125.88 REMARK 500 ARG A 97 36.03 -93.88 REMARK 500 SER A 165 115.80 -29.96 REMARK 500 ASP A 219 32.35 -144.37 REMARK 500 ASP A 285 -124.73 58.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 26 0.11 SIDE CHAIN REMARK 500 ARG A 38 0.14 SIDE CHAIN REMARK 500 ARG A 41 0.14 SIDE CHAIN REMARK 500 ARG A 55 0.08 SIDE CHAIN REMARK 500 ARG A 110 0.09 SIDE CHAIN REMARK 500 ARG A 138 0.14 SIDE CHAIN REMARK 500 ARG A 155 0.09 SIDE CHAIN REMARK 500 ARG A 199 0.10 SIDE CHAIN REMARK 500 ARG A 229 0.13 SIDE CHAIN REMARK 500 ARG A 250 0.13 SIDE CHAIN REMARK 500 ARG A 361 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 4 13.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PGE A 408 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 61M A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 410 DBREF 6SW2 A 1 398 UNP Q9HWJ1 Q9HWJ1_PSEAE 1 398 SEQRES 1 A 398 MET THR ASP ASN HIS ILE ASP VAL LEU ILE ASN GLY CYS SEQRES 2 A 398 GLY ILE GLY GLY ALA MET LEU ALA TYR LEU LEU GLY ARG SEQRES 3 A 398 GLN GLY HIS ARG VAL VAL VAL VAL GLU GLN ALA ARG ARG SEQRES 4 A 398 GLU ARG ALA ILE ASN GLY ALA ASP LEU LEU LYS PRO ALA SEQRES 5 A 398 GLY ILE ARG VAL VAL GLU ALA ALA GLY LEU LEU ALA GLU SEQRES 6 A 398 VAL THR ARG ARG GLY GLY ARG VAL ARG HIS GLU LEU GLU SEQRES 7 A 398 VAL TYR HIS ASP GLY GLU LEU LEU ARG TYR PHE ASN TYR SEQRES 8 A 398 SER SER VAL ASP ALA ARG GLY TYR PHE ILE LEU MET PRO SEQRES 9 A 398 CSO GLU SER LEU ARG ARG LEU VAL LEU GLU LYS ILE ASP SEQRES 10 A 398 GLY GLU ALA THR VAL GLU MET LEU PHE GLU THR ARG ILE SEQRES 11 A 398 GLU ALA VAL GLN ARG ASP GLU ARG HIS ALA ILE ASP GLN SEQRES 12 A 398 VAL ARG LEU ASN ASP GLY ARG VAL LEU ARG PRO ARG VAL SEQRES 13 A 398 VAL VAL GLY ALA ASP GLY ILE ALA SER TYR VAL ARG ARG SEQRES 14 A 398 ARG LEU LEU ASP ILE ASP VAL GLU ARG ARG PRO TYR PRO SEQRES 15 A 398 SER PRO MET LEU VAL GLY THR PHE ALA LEU ALA PRO CYS SEQRES 16 A 398 VAL ALA GLU ARG ASN ARG LEU TYR VAL ASP SER GLN GLY SEQRES 17 A 398 GLY LEU ALA TYR PHE TYR PRO ILE GLY PHE ASP ARG ALA SEQRES 18 A 398 ARG LEU VAL VAL SER PHE PRO ARG GLU GLU ALA ARG GLU SEQRES 19 A 398 LEU MET ALA ASP THR ARG GLY GLU SER LEU ARG ARG ARG SEQRES 20 A 398 LEU GLN ARG PHE VAL GLY ASP GLU SER ALA GLU ALA ILE SEQRES 21 A 398 ALA ALA VAL THR GLY THR SER ARG PHE LYS GLY ILE PRO SEQRES 22 A 398 ILE GLY TYR LEU ASN LEU ASP ARG TYR TRP ALA ASP ASN SEQRES 23 A 398 VAL ALA MET LEU GLY ASP ALA ILE HIS ASN VAL HIS PRO SEQRES 24 A 398 ILE THR GLY GLN GLY MET ASN LEU ALA ILE GLU ASP ALA SEQRES 25 A 398 SER ALA LEU ALA ASP ALA LEU ASP LEU ALA LEU ARG ASP SEQRES 26 A 398 ALA CYS ALA LEU GLU ASP ALA LEU ALA GLY TYR GLN ALA SEQRES 27 A 398 GLU ARG PHE PRO VAL ASN GLN ALA ILE VAL SER TYR GLY SEQRES 28 A 398 HIS ALA LEU ALA THR SER LEU GLU ASP ARG GLN ARG PHE SEQRES 29 A 398 ALA GLY VAL PHE ASP THR ALA LEU GLN GLY SER SER ARG SEQRES 30 A 398 THR PRO GLU ALA LEU GLY GLY GLU ARG SER TYR GLN PRO SEQRES 31 A 398 VAL ARG SER PRO ALA PRO LEU GLY MODRES 6SW2 CSO A 105 CYS MODIFIED RESIDUE HET CSO A 105 7 HET FAD A 401 53 HET 61M A 402 13 HET PGE A 403 10 HET PO4 A 404 5 HET MES A 405 12 HET PEG A 406 7 HET PEG A 407 7 HET PGE A 408 8 HET PGE A 409 10 HET PGE A 410 10 HETNAM CSO S-HYDROXYCYSTEINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM 61M 3-(2-AMINOPHENYL)-3-OXOPROPANOIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM PO4 PHOSPHATE ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 61M 2-AMINOBENZOYLACETATE FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 61M C9 H9 N O3 FORMUL 4 PGE 4(C6 H14 O4) FORMUL 5 PO4 O4 P 3- FORMUL 6 MES C6 H13 N O4 S FORMUL 7 PEG 2(C4 H10 O3) FORMUL 12 HOH *175(H2 O) HELIX 1 AA1 GLY A 14 ARG A 26 1 13 HELIX 2 AA2 LYS A 50 ALA A 60 1 11 HELIX 3 AA3 LEU A 62 ARG A 69 1 8 HELIX 4 AA4 PRO A 104 ASP A 117 1 14 HELIX 5 AA5 SER A 165 LEU A 171 1 7 HELIX 6 AA6 ALA A 193 ARG A 199 1 7 HELIX 7 AA7 PRO A 228 ASP A 238 1 11 HELIX 8 AA8 GLY A 241 ARG A 250 1 10 HELIX 9 AA9 GLY A 253 GLU A 255 5 3 HELIX 10 AB1 SER A 256 ALA A 262 1 7 HELIX 11 AB2 GLY A 291 ALA A 293 5 3 HELIX 12 AB3 HIS A 298 GLY A 302 5 5 HELIX 13 AB4 GLN A 303 ARG A 324 1 22 HELIX 14 AB5 ALA A 328 LEU A 358 1 31 HELIX 15 AB6 ASP A 360 THR A 370 1 11 SHEET 1 AA1 6 VAL A 122 LEU A 125 0 SHEET 2 AA1 6 VAL A 31 VAL A 34 1 N VAL A 33 O LEU A 125 SHEET 3 AA1 6 HIS A 5 ASN A 11 1 N ILE A 10 O VAL A 34 SHEET 4 AA1 6 VAL A 151 GLY A 159 1 O VAL A 158 N ASN A 11 SHEET 5 AA1 6 ILE A 141 LEU A 146 -1 N VAL A 144 O LEU A 152 SHEET 6 AA1 6 ILE A 130 ARG A 135 -1 N GLU A 131 O ARG A 145 SHEET 1 AA2 6 VAL A 122 LEU A 125 0 SHEET 2 AA2 6 VAL A 31 VAL A 34 1 N VAL A 33 O LEU A 125 SHEET 3 AA2 6 HIS A 5 ASN A 11 1 N ILE A 10 O VAL A 34 SHEET 4 AA2 6 VAL A 151 GLY A 159 1 O VAL A 158 N ASN A 11 SHEET 5 AA2 6 VAL A 287 MET A 289 1 O ALA A 288 N GLY A 159 SHEET 6 AA2 6 TRP A 283 ALA A 284 -1 N ALA A 284 O VAL A 287 SHEET 1 AA3 3 LEU A 48 LEU A 49 0 SHEET 2 AA3 3 PHE A 100 LEU A 102 -1 O ILE A 101 N LEU A 49 SHEET 3 AA3 3 ARG A 72 ARG A 74 -1 N ARG A 74 O PHE A 100 SHEET 1 AA4 7 GLU A 84 ASN A 90 0 SHEET 2 AA4 7 GLU A 76 HIS A 81 -1 N VAL A 79 O ARG A 87 SHEET 3 AA4 7 ASN A 200 VAL A 204 1 O LEU A 202 N GLU A 78 SHEET 4 AA4 7 LEU A 210 ILE A 216 -1 O ALA A 211 N TYR A 203 SHEET 5 AA4 7 ARG A 220 SER A 226 -1 O ARG A 222 N TYR A 214 SHEET 6 AA4 7 MET A 185 ALA A 191 -1 N PHE A 190 O ALA A 221 SHEET 7 AA4 7 LYS A 270 ILE A 272 -1 O LYS A 270 N VAL A 187 SHEET 1 AA5 2 LEU A 277 ASN A 278 0 SHEET 2 AA5 2 HIS A 295 ASN A 296 -1 O ASN A 296 N LEU A 277 LINK C PRO A 104 N CSO A 105 1555 1555 1.34 LINK C CSO A 105 N GLU A 106 1555 1555 1.35 SITE 1 AC1 38 ASN A 11 GLY A 12 GLY A 14 ILE A 15 SITE 2 AC1 38 GLY A 16 VAL A 34 GLU A 35 GLN A 36 SITE 3 AC1 38 ARG A 41 ASN A 44 GLY A 45 ALA A 46 SITE 4 AC1 38 ALA A 160 ASP A 161 GLY A 162 TYR A 166 SITE 5 AC1 38 GLY A 271 ILE A 272 GLY A 291 ASP A 292 SITE 6 AC1 38 PRO A 299 GLY A 302 GLN A 303 GLY A 304 SITE 7 AC1 38 ALA A 308 ALA A 326 61M A 402 HOH A 512 SITE 8 AC1 38 HOH A 516 HOH A 525 HOH A 529 HOH A 543 SITE 9 AC1 38 HOH A 551 HOH A 591 HOH A 610 HOH A 624 SITE 10 AC1 38 HOH A 637 HOH A 638 SITE 1 AC2 9 ALA A 46 ASP A 47 LEU A 48 TYR A 212 SITE 2 AC2 9 TYR A 214 PRO A 299 ILE A 300 GLY A 302 SITE 3 AC2 9 FAD A 401 SITE 1 AC3 2 GLY A 61 LYS A 115 SITE 1 AC4 7 ARG A 97 VAL A 133 ARG A 135 ARG A 170 SITE 2 AC4 7 LEU A 171 ASP A 173 HOH A 501 SITE 1 AC5 16 LEU A 23 GLN A 27 ILE A 163 ALA A 164 SITE 2 AC5 16 ARG A 168 ARG A 169 ARG A 178 ALA A 316 SITE 3 AC5 16 ASP A 317 ASP A 320 ARG A 324 HOH A 532 SITE 4 AC5 16 HOH A 540 HOH A 578 HOH A 611 HOH A 633 SITE 1 AC6 4 GLY A 83 ARG A 250 GLY A 253 HOH A 520 SITE 1 AC7 3 ARG A 179 TYR A 181 HIS A 352 SITE 1 AC8 4 ARG A 179 LEU A 279 ASP A 280 HOH A 623 SITE 1 AC9 5 ASP A 117 SER A 349 HIS A 352 THR A 356 SITE 2 AC9 5 HOH A 588 SITE 1 AD1 4 ARG A 155 MET A 236 THR A 266 PHE A 269 CRYST1 47.079 63.984 128.101 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021241 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007806 0.00000