HEADER HYDROLASE 26-SEP-19 6SXT TITLE GH54 A-L-ARABINOFURANOSIDASE SOAKED WITH AZIRIDINE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-L-ARABINOFURANOSIDASE B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ARABINOSIDASE B; COMPND 5 EC: 3.2.1.55; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS KAWACHII (STRAIN NBRC 4308); SOURCE 3 ORGANISM_COMMON: WHITE KOJI MOLD; SOURCE 4 ORGANISM_TAXID: 1033177; SOURCE 5 STRAIN: NBRC 4308; SOURCE 6 GENE: ABFB, AKAW_08685; SOURCE 7 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: X-33; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPICZA KEYWDS COVALENT COMPLEX, ARABINOFURANOSIDASE, GH54, ASPERGILLUS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.G.S.MCGREGOR,G.J.DAVIES,A.NIN-HILL,C.ROVIRA REVDAT 4 24-JAN-24 6SXT 1 HETSYN REVDAT 3 29-JUL-20 6SXT 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 ATOM REVDAT 2 18-MAR-20 6SXT 1 JRNL REVDAT 1 26-FEB-20 6SXT 0 JRNL AUTH N.G.S.MCGREGOR,M.ARTOLA,A.NIN-HILL,D.LINZEL,M.HAON, JRNL AUTH 2 J.REIJNGOUD,A.RAM,M.N.ROSSO,G.A.VAN DER MAREL,J.D.C.CODEE, JRNL AUTH 3 G.P.VAN WEZEL,J.G.BERRIN,C.ROVIRA,H.S.OVERKLEEFT,G.J.DAVIES JRNL TITL RATIONAL DESIGN OF MECHANISM-BASED INHIBITORS AND JRNL TITL 2 ACTIVITY-BASED PROBES FOR THE IDENTIFICATION OF RETAINING JRNL TITL 3 ALPHA-L-ARABINOFURANOSIDASES. JRNL REF J.AM.CHEM.SOC. V. 142 4648 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 32053363 JRNL DOI 10.1021/JACS.9B11351 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 141273 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.941 REMARK 3 FREE R VALUE TEST SET COUNT : 6980 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9804 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 473 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3578 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 207 REMARK 3 SOLVENT ATOMS : 456 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15400 REMARK 3 B22 (A**2) : 0.15400 REMARK 3 B33 (A**2) : -0.49900 REMARK 3 B12 (A**2) : 0.07700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.048 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3897 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3292 ; 0.037 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5282 ; 1.942 ; 1.671 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7675 ; 2.577 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 497 ; 7.567 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;30.439 ;24.054 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 508 ;10.580 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;21.062 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 524 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4426 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 799 ; 0.018 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 718 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 82 ; 0.389 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1927 ; 0.177 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 349 ; 0.132 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1951 ; 1.737 ; 1.969 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1948 ; 1.696 ; 1.965 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2438 ; 2.241 ; 2.939 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2439 ; 2.241 ; 2.942 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1946 ; 3.195 ; 2.323 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1947 ; 3.194 ; 2.325 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2836 ; 4.300 ; 3.329 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2837 ; 4.299 ; 3.331 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6SXT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104498. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MAR 15, 2019 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 141273 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.466 REMARK 200 RESOLUTION RANGE LOW (A) : 85.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 2.98000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 1WD3 REMARK 200 REMARK 200 REMARK: TRIANGULAR PRISMS ROUGHLY TWICE AS LONG AS THE TRIANGLE REMARK 200 FACE IS TALL. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2:1 PROTEIN:WELL SOLUTION. 0.1 M PH REMARK 280 4.5 SODIUM ACETATE BUFFER, 60% PEG400, 0.3 M (NH4)2SO4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 56.11600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.39859 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 114.24333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 56.11600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.39859 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 114.24333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 56.11600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.39859 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 114.24333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 56.11600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.39859 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 114.24333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 56.11600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.39859 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 114.24333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 56.11600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.39859 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 114.24333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.79718 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 228.48667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.79718 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 228.48667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.79718 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 228.48667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.79718 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 228.48667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.79718 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 228.48667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.79718 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 228.48667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 505 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 505 LIES ON A SPECIAL POSITION. REMARK 375 S SO4 A 512 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 880 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 883 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 991 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1055 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 499 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA A 252 HO1 EDO A 528 0.93 REMARK 500 H ASP A 93 HD1 HIS A 100 1.04 REMARK 500 H GLU A 230 HH TYR A 278 1.08 REMARK 500 HH22 ARG A 459 HE21 GLN A 477 1.17 REMARK 500 O4 NAG B 1 H1 NAG B 2 1.30 REMARK 500 H ALA A 397 HG1 THR A 437 1.33 REMARK 500 H SER A 64 HO1 PGE A 531 1.34 REMARK 500 C ALA A 498 H3 ALA A 501 1.48 REMARK 500 C4 NAG B 1 H1 NAG B 2 1.56 REMARK 500 O3 PGE A 531 O HOH A 602 2.00 REMARK 500 O3 SO4 A 512 O HOH A 603 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HG21 THR A 383 HG1 THR A 409 6555 1.27 REMARK 500 O ALA A 501 HO1 PGE A 517 6555 1.52 REMARK 500 O HOH A 814 O HOH A 893 10455 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 221 CD GLU A 221 OE2 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 241 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 271 CB - CG - CD1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 275 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 84 -164.18 -160.72 REMARK 500 ASN A 99 48.11 -84.78 REMARK 500 TRP A 206 -96.95 -115.69 REMARK 500 GLU A 221 130.78 76.94 REMARK 500 ASN A 223 132.12 179.90 REMARK 500 SER A 343 -167.49 53.35 REMARK 500 ASP A 368 -125.10 51.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ALA A 501 REMARK 610 PEG A 519 REMARK 610 PEG A 521 REMARK 610 PEG A 524 REMARK 610 PEG A 525 REMARK 610 PEG A 526 REMARK 610 EDO A 527 DBREF 6SXT A 19 499 UNP Q8NK89 ABFB_ASPKW 19 499 SEQADV 6SXT SER A 17 UNP Q8NK89 EXPRESSION TAG SEQADV 6SXT MET A 18 UNP Q8NK89 EXPRESSION TAG SEQRES 1 A 483 SER MET GLY PRO CYS ASP ILE TYR GLU ALA GLY ASP THR SEQRES 2 A 483 PRO CYS VAL ALA ALA HIS SER THR THR ARG ALA LEU TYR SEQRES 3 A 483 SER SER PHE SER GLY ALA LEU TYR GLN LEU GLN ARG GLY SEQRES 4 A 483 SER ASP ASP THR THR THR THR ILE SER PRO LEU THR ALA SEQRES 5 A 483 GLY GLY ILE ALA ASP ALA SER ALA GLN ASP THR PHE CYS SEQRES 6 A 483 ALA ASN THR THR CYS LEU ILE THR ILE ILE TYR ASP GLN SEQRES 7 A 483 SER GLY ASN GLY ASN HIS LEU THR GLN ALA PRO PRO GLY SEQRES 8 A 483 GLY PHE ASP GLY PRO ASP THR ASP GLY TYR ASP ASN LEU SEQRES 9 A 483 ALA SER ALA ILE GLY ALA PRO VAL THR LEU ASN GLY GLN SEQRES 10 A 483 LYS ALA TYR GLY VAL PHE MET SER PRO GLY THR GLY TYR SEQRES 11 A 483 ARG ASN ASN GLU ALA THR GLY THR ALA THR GLY ASP GLU SEQRES 12 A 483 ALA GLU GLY MET TYR ALA VAL LEU ASP GLY THR HIS TYR SEQRES 13 A 483 ASN ASP ALA CYS CYS PHE ASP TYR GLY ASN ALA GLU THR SEQRES 14 A 483 SER SER THR ASP THR GLY ALA GLY HIS MET GLU ALA ILE SEQRES 15 A 483 TYR LEU GLY ASN SER THR THR TRP GLY TYR GLY ALA GLY SEQRES 16 A 483 ASP GLY PRO TRP ILE MET VAL ASP MET GLU ASN ASN LEU SEQRES 17 A 483 PHE SER GLY ALA ASP GLU GLY TYR ASN SER GLY ASP PRO SEQRES 18 A 483 SER ILE SER TYR ARG PHE VAL THR ALA ALA VAL LYS GLY SEQRES 19 A 483 GLY ALA ASP LYS TRP ALA ILE ARG GLY ALA ASN ALA ALA SEQRES 20 A 483 SER GLY SER LEU SER THR TYR TYR SER GLY ALA ARG PRO SEQRES 21 A 483 ASP TYR SER GLY TYR ASN PRO MET SER LYS GLU GLY ALA SEQRES 22 A 483 ILE ILE LEU GLY ILE GLY GLY ASP ASN SER ASN GLY ALA SEQRES 23 A 483 GLN GLY THR PHE TYR GLU GLY VAL MET THR SER GLY TYR SEQRES 24 A 483 PRO SER ASP ASP THR GLU ASN SER VAL GLN GLU ASN ILE SEQRES 25 A 483 VAL ALA ALA LYS TYR VAL VAL GLY SER LEU VAL SER GLY SEQRES 26 A 483 PRO SER PHE THR SER GLY GLU VAL VAL SER LEU ARG VAL SEQRES 27 A 483 THR THR PRO GLY TYR THR THR ARG TYR ILE ALA HIS THR SEQRES 28 A 483 ASP THR THR VAL ASN THR GLN VAL VAL ASP ASP ASP SER SEQRES 29 A 483 SER THR THR LEU LYS GLU GLU ALA SER TRP THR VAL VAL SEQRES 30 A 483 THR GLY LEU ALA ASN SER GLN CYS PHE SER PHE GLU SER SEQRES 31 A 483 VAL ASP THR PRO GLY SER TYR ILE ARG HIS TYR ASN PHE SEQRES 32 A 483 GLU LEU LEU LEU ASN ALA ASN ASP GLY THR LYS GLN PHE SEQRES 33 A 483 HIS GLU ASP ALA THR PHE CYS PRO GLN ALA ALA LEU ASN SEQRES 34 A 483 GLY GLU GLY THR SER LEU ARG SER TRP SER TYR PRO THR SEQRES 35 A 483 ARG TYR PHE ARG HIS TYR GLU ASN VAL LEU TYR ALA ALA SEQRES 36 A 483 SER ASN GLY GLY VAL GLN THR PHE ASP SER LYS THR SER SEQRES 37 A 483 PHE ASN ASN ASP VAL SER PHE GLU ILE GLU THR ALA PHE SEQRES 38 A 483 ALA SER HET NAG B 1 27 HET NAG B 2 28 HET ALA A 501 12 HET NAG A 504 28 HET SO4 A 505 5 HET SO4 A 506 5 HET LXE A 507 23 HET ACT A 508 7 HET PEG A 509 17 HET PGE A 510 24 HET PEG A 511 17 HET SO4 A 512 5 HET PEG A 513 17 HET EDO A 514 10 HET EDO A 515 10 HET EDO A 516 10 HET PGE A 517 24 HET SO4 A 518 5 HET PEG A 519 11 HET ACT A 520 7 HET PEG A 521 14 HET PEG A 522 17 HET EDO A 523 10 HET PEG A 524 14 HET PEG A 525 13 HET PEG A 526 15 HET EDO A 527 8 HET EDO A 528 10 HET EDO A 529 10 HET EDO A 530 10 HET PGE A 531 24 HET EDO A 532 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ALA ALANINE HETNAM SO4 SULFATE ION HETNAM LXE [(1~{S},2~{S},3~{S},4~{S})-2-(HYDROXYMETHYL)-3,4- HETNAM 2 LXE BIS(OXIDANYL)CYCLOPENTYL]AZANIUM HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 ALA C3 H7 N O2 FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 LXE C6 H14 N O3 1+ FORMUL 8 ACT 2(C2 H3 O2 1-) FORMUL 9 PEG 9(C4 H10 O3) FORMUL 10 PGE 3(C6 H14 O4) FORMUL 14 EDO 9(C2 H6 O2) FORMUL 33 HOH *456(H2 O) HELIX 1 AA1 GLY A 19 GLY A 27 1 9 HELIX 2 AA2 ASP A 73 CYS A 81 1 9 HELIX 3 AA3 ASP A 113 TYR A 117 5 5 HELIX 4 AA4 SER A 317 LYS A 332 1 16 HELIX 5 AA5 SER A 381 ALA A 388 1 8 HELIX 6 AA6 THR A 429 ALA A 436 1 8 HELIX 7 AA7 GLN A 477 SER A 481 5 5 HELIX 8 AA8 SER A 484 VAL A 489 1 6 SHEET 1 AA1 8 CYS A 31 SER A 36 0 SHEET 2 AA1 8 GLY A 304 THR A 312 -1 O GLY A 309 N HIS A 35 SHEET 3 AA1 8 GLN A 133 MET A 140 -1 N VAL A 138 O PHE A 306 SHEET 4 AA1 8 ALA A 121 LEU A 130 -1 N LEU A 130 O GLN A 133 SHEET 5 AA1 8 GLU A 161 ASP A 168 0 SHEET 6 AA1 8 PHE A 243 GLY A 251 -1 O ALA A 246 N ALA A 165 SHEET 7 AA1 8 LYS A 254 ASN A 261 -1 O LYS A 254 N GLY A 251 SHEET 8 AA1 8 SER A 264 GLY A 273 -1 O TYR A 270 N ILE A 257 SHEET 1 AA2 7 THR A 60 ILE A 63 0 SHEET 2 AA2 7 TYR A 50 ARG A 54 -1 N LEU A 52 O THR A 61 SHEET 3 AA2 7 CYS A 86 ILE A 91 -1 O LEU A 87 N GLN A 53 SHEET 4 AA2 7 ALA A 121 LEU A 130 -1 O ALA A 121 N ILE A 88 SHEET 5 AA2 7 GLN A 133 MET A 140 -1 O GLN A 133 N LEU A 130 SHEET 6 AA2 7 GLY A 304 THR A 312 -1 O PHE A 306 N VAL A 138 SHEET 7 AA2 7 TYR A 333 VAL A 335 0 SHEET 1 AA3 7 THR A 102 GLN A 103 0 SHEET 2 AA3 7 TYR A 146 ASN A 148 -1 O ARG A 147 N THR A 102 SHEET 3 AA3 7 ALA A 289 LEU A 292 -1 O ILE A 290 N ASN A 148 SHEET 4 AA3 7 ASP A 179 ALA A 183 -1 N ALA A 183 O ALA A 289 SHEET 5 AA3 7 GLU A 196 GLY A 201 -1 O ILE A 198 N TYR A 180 SHEET 6 AA3 7 TRP A 215 ASP A 219 -1 O ASP A 219 N ALA A 197 SHEET 7 AA3 7 LEU A 224 PHE A 225 -1 O PHE A 225 N VAL A 218 SHEET 1 AA4 4 PHE A 402 SER A 406 0 SHEET 2 AA4 4 TRP A 390 THR A 394 -1 N THR A 391 O GLU A 405 SHEET 3 AA4 4 VAL A 349 VAL A 354 -1 N VAL A 350 O TRP A 390 SHEET 4 AA4 4 PHE A 491 THR A 495 -1 O GLU A 494 N SER A 351 SHEET 1 AA5 2 ARG A 362 THR A 367 0 SHEET 2 AA5 2 THR A 370 VAL A 375 -1 O ASN A 372 N ALA A 365 SHEET 1 AA6 2 SER A 412 TYR A 417 0 SHEET 2 AA6 2 GLU A 420 ALA A 425 -1 O LEU A 422 N ARG A 415 SHEET 1 AA7 2 PHE A 438 ALA A 442 0 SHEET 2 AA7 2 THR A 449 SER A 453 -1 O SER A 450 N GLN A 441 SHEET 1 AA8 2 TYR A 460 TYR A 464 0 SHEET 2 AA8 2 VAL A 467 ALA A 471 -1 O TYR A 469 N ARG A 462 SSBOND 1 CYS A 21 CYS A 31 1555 1555 2.32 SSBOND 2 CYS A 81 CYS A 86 1555 1555 2.04 SSBOND 3 CYS A 176 CYS A 177 1555 1555 2.12 SSBOND 4 CYS A 401 CYS A 439 1555 1555 2.26 LINK ND2 ASN A 83 C1 NAG A 504 1555 1555 1.43 LINK ND2 ASN A 202 C1 NAG B 1 1555 1555 1.47 LINK OE2 GLU A 221 C1' LXE A 507 1555 1555 1.40 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.47 CISPEP 1 CYS A 176 CYS A 177 0 -3.77 CISPEP 2 GLY A 213 PRO A 214 0 -0.37 CISPEP 3 ASN A 282 PRO A 283 0 -9.94 CRYST1 112.232 112.232 342.730 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008910 0.005144 0.000000 0.00000 SCALE2 0.000000 0.010289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002918 0.00000