HEADER LIGASE 27-SEP-19 6SYF TITLE HUMAN UBC9 WITH COVALENT ISOPEPTIDE LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUMO-CONJUGATING ENZYME UBC9; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: RING-TYPE E3 SUMO TRANSFERASE UBC9,SUMO-PROTEIN LIGASE, COMPND 5 UBIQUITIN CARRIER PROTEIN 9,UBIQUITIN CARRIER PROTEIN I,UBIQUITIN- COMPND 6 CONJUGATING ENZYME E2 I,UBIQUITIN-PROTEIN LIGASE I,P18; COMPND 7 EC: 2.3.2.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: ACE-LEU-ARG-LEU-ARG-GLY-CYS; COMPND 12 CHAIN: E, G, I, K; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: ACE-ILE-LYS-GLN-GLU; COMPND 16 CHAIN: F, H, J, L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBE2I, UBC9, UBCE9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS UBC9, ISOPEPTIDE, DISULFIDE, UBIQUITIN, SUMO, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR R.HOFMANN,G.AKIMOTO,T.G.WUCHERPFENNIG,C.ZEYMER,J.W.BODE REVDAT 5 24-JAN-24 6SYF 1 REMARK REVDAT 4 04-NOV-20 6SYF 1 JRNL REVDAT 3 23-SEP-20 6SYF 1 JRNL REVDAT 2 16-SEP-20 6SYF 1 JRNL REVDAT 1 12-AUG-20 6SYF 0 JRNL AUTH R.HOFMANN,G.AKIMOTO,T.G.WUCHERPFENNIG,C.ZEYMER,J.W.BODE JRNL TITL LYSINE ACYLATION USING CONJUGATING ENZYMES FOR SITE-SPECIFIC JRNL TITL 2 MODIFICATION AND UBIQUITINATION OF RECOMBINANT PROTEINS. JRNL REF NAT.CHEM. V. 12 1008 2020 JRNL REFN ESSN 1755-4349 JRNL PMID 32929246 JRNL DOI 10.1038/S41557-020-0528-Y REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.3 (23-SEP-2019) REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 49318 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2466 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.07 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 987 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3080 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 938 REMARK 3 BIN R VALUE (WORKING SET) : 0.3068 REMARK 3 BIN FREE R VALUE : 0.3305 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.96 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 49 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5280 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 518 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78820 REMARK 3 B22 (A**2) : 4.41990 REMARK 3 B33 (A**2) : -6.20810 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.70250 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.300 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.204 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.176 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.192 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.172 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5495 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7445 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1893 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 914 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5495 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 689 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5179 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.95 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.00 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.62 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 55.2563 12.2398 -8.9363 REMARK 3 T TENSOR REMARK 3 T11: -0.2281 T22: -0.1078 REMARK 3 T33: -0.0214 T12: 0.0006 REMARK 3 T13: -0.0236 T23: 0.0136 REMARK 3 L TENSOR REMARK 3 L11: 3.1342 L22: 3.6778 REMARK 3 L33: 1.9548 L12: -0.0075 REMARK 3 L13: 0.8180 L23: 0.3300 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.2380 S13: 0.0017 REMARK 3 S21: -0.2399 S22: 0.0038 S23: -0.0263 REMARK 3 S31: 0.0420 S32: 0.0447 S33: -0.0311 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 7.8715 11.2361 -8.7730 REMARK 3 T TENSOR REMARK 3 T11: -0.3056 T22: -0.1162 REMARK 3 T33: 0.0499 T12: -0.0061 REMARK 3 T13: 0.0157 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.2467 L22: 3.8133 REMARK 3 L33: 2.3644 L12: 0.1300 REMARK 3 L13: 0.4873 L23: 0.6837 REMARK 3 S TENSOR REMARK 3 S11: -0.0675 S12: 0.0623 S13: -0.0633 REMARK 3 S21: -0.0512 S22: 0.0400 S23: 0.0566 REMARK 3 S31: 0.0973 S32: 0.0223 S33: 0.0275 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 78.9510 8.4705 -34.0410 REMARK 3 T TENSOR REMARK 3 T11: -0.2599 T22: -0.1825 REMARK 3 T33: 0.1129 T12: -0.0021 REMARK 3 T13: -0.0498 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 3.7541 L22: 3.7941 REMARK 3 L33: 2.2203 L12: 0.3453 REMARK 3 L13: -0.7463 L23: 0.2187 REMARK 3 S TENSOR REMARK 3 S11: 0.0758 S12: -0.1938 S13: 0.1104 REMARK 3 S21: 0.2039 S22: -0.0719 S23: 0.0614 REMARK 3 S31: -0.1303 S32: -0.0144 S33: -0.0040 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 31.3562 7.1511 -33.8659 REMARK 3 T TENSOR REMARK 3 T11: -0.1935 T22: -0.0625 REMARK 3 T33: -0.0183 T12: -0.0033 REMARK 3 T13: -0.0597 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 2.3984 L22: 3.5418 REMARK 3 L33: 1.3963 L12: -0.0588 REMARK 3 L13: -0.3962 L23: 0.6882 REMARK 3 S TENSOR REMARK 3 S11: 0.0430 S12: -0.1633 S13: 0.0226 REMARK 3 S21: 0.1965 S22: -0.0266 S23: -0.1176 REMARK 3 S31: -0.0016 S32: 0.0417 S33: -0.0164 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6SYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1292104552. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49319 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 47.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.307 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.24 REMARK 200 R MERGE FOR SHELL (I) : 0.39400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5F6E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRISODIUM CITRATE PH 5.0, 30% REMARK 280 PEG8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 ILE A 4 REMARK 465 SER A 158 REMARK 465 GLY B 1 REMARK 465 SER B 158 REMARK 465 GLY C 1 REMARK 465 SER C 158 REMARK 465 GLY D 1 REMARK 465 SER D 2 REMARK 465 GLY D 3 REMARK 465 ILE D 4 REMARK 465 SER D 158 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C CYS E 7 NZ LYS F 3 1.31 REMARK 500 C CYS I 7 NZ LYS J 3 1.34 REMARK 500 C CYS K 7 NZ LYS L 3 1.34 REMARK 500 C CYS G 7 NZ LYS H 3 1.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 270 O HOH D 241 2654 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 101 -111.91 -97.49 REMARK 500 LYS B 101 -111.69 -98.26 REMARK 500 ASP C 19 132.31 -170.44 REMARK 500 LYS C 101 -110.98 -102.06 REMARK 500 LYS D 101 -112.13 -97.50 REMARK 500 ARG E 3 82.66 -65.07 REMARK 500 LEU G 4 39.89 -94.29 REMARK 500 ARG I 3 95.91 -65.33 REMARK 500 ARG K 3 106.98 -59.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 346 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH B 347 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH C 313 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH D 315 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH D 316 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH D 317 DISTANCE = 8.13 ANGSTROMS REMARK 525 HOH E 105 DISTANCE = 7.03 ANGSTROMS REMARK 525 HOH H 105 DISTANCE = 7.22 ANGSTROMS DBREF 6SYF A 2 158 UNP P63279 UBC9_HUMAN 2 158 DBREF 6SYF B 2 158 UNP P63279 UBC9_HUMAN 2 158 DBREF 6SYF C 2 158 UNP P63279 UBC9_HUMAN 2 158 DBREF 6SYF D 2 158 UNP P63279 UBC9_HUMAN 2 158 DBREF 6SYF E 1 7 PDB 6SYF 6SYF 1 7 DBREF 6SYF F 1 5 PDB 6SYF 6SYF 1 5 DBREF 6SYF G 1 7 PDB 6SYF 6SYF 1 7 DBREF 6SYF H 1 5 PDB 6SYF 6SYF 1 5 DBREF 6SYF I 1 7 PDB 6SYF 6SYF 1 7 DBREF 6SYF J 1 5 PDB 6SYF 6SYF 1 5 DBREF 6SYF K 1 7 PDB 6SYF 6SYF 1 7 DBREF 6SYF L 1 5 PDB 6SYF 6SYF 1 5 SEQADV 6SYF GLY A 1 UNP P63279 EXPRESSION TAG SEQADV 6SYF ALA A 48 UNP P63279 LYS 48 ENGINEERED MUTATION SEQADV 6SYF ALA A 49 UNP P63279 LYS 49 ENGINEERED MUTATION SEQADV 6SYF ALA A 54 UNP P63279 GLU 54 ENGINEERED MUTATION SEQADV 6SYF ALA A 138 UNP P63279 CYS 138 ENGINEERED MUTATION SEQADV 6SYF GLY B 1 UNP P63279 EXPRESSION TAG SEQADV 6SYF ALA B 48 UNP P63279 LYS 48 ENGINEERED MUTATION SEQADV 6SYF ALA B 49 UNP P63279 LYS 49 ENGINEERED MUTATION SEQADV 6SYF ALA B 54 UNP P63279 GLU 54 ENGINEERED MUTATION SEQADV 6SYF ALA B 138 UNP P63279 CYS 138 ENGINEERED MUTATION SEQADV 6SYF GLY C 1 UNP P63279 EXPRESSION TAG SEQADV 6SYF ALA C 48 UNP P63279 LYS 48 ENGINEERED MUTATION SEQADV 6SYF ALA C 49 UNP P63279 LYS 49 ENGINEERED MUTATION SEQADV 6SYF ALA C 54 UNP P63279 GLU 54 ENGINEERED MUTATION SEQADV 6SYF ALA C 138 UNP P63279 CYS 138 ENGINEERED MUTATION SEQADV 6SYF GLY D 1 UNP P63279 EXPRESSION TAG SEQADV 6SYF ALA D 48 UNP P63279 LYS 48 ENGINEERED MUTATION SEQADV 6SYF ALA D 49 UNP P63279 LYS 49 ENGINEERED MUTATION SEQADV 6SYF ALA D 54 UNP P63279 GLU 54 ENGINEERED MUTATION SEQADV 6SYF ALA D 138 UNP P63279 CYS 138 ENGINEERED MUTATION SEQRES 1 A 158 GLY SER GLY ILE ALA LEU SER ARG LEU ALA GLN GLU ARG SEQRES 2 A 158 LYS ALA TRP ARG LYS ASP HIS PRO PHE GLY PHE VAL ALA SEQRES 3 A 158 VAL PRO THR LYS ASN PRO ASP GLY THR MET ASN LEU MET SEQRES 4 A 158 ASN TRP GLU CYS ALA ILE PRO GLY ALA ALA GLY THR PRO SEQRES 5 A 158 TRP ALA GLY GLY LEU PHE LYS LEU ARG MET LEU PHE LYS SEQRES 6 A 158 ASP ASP TYR PRO SER SER PRO PRO LYS CYS LYS PHE GLU SEQRES 7 A 158 PRO PRO LEU PHE HIS PRO ASN VAL TYR PRO SER GLY THR SEQRES 8 A 158 VAL CYS LEU SER ILE LEU GLU GLU ASP LYS ASP TRP ARG SEQRES 9 A 158 PRO ALA ILE THR ILE LYS GLN ILE LEU LEU GLY ILE GLN SEQRES 10 A 158 GLU LEU LEU ASN GLU PRO ASN ILE GLN ASP PRO ALA GLN SEQRES 11 A 158 ALA GLU ALA TYR THR ILE TYR ALA GLN ASN ARG VAL GLU SEQRES 12 A 158 TYR GLU LYS ARG VAL ARG ALA GLN ALA LYS LYS PHE ALA SEQRES 13 A 158 PRO SER SEQRES 1 B 158 GLY SER GLY ILE ALA LEU SER ARG LEU ALA GLN GLU ARG SEQRES 2 B 158 LYS ALA TRP ARG LYS ASP HIS PRO PHE GLY PHE VAL ALA SEQRES 3 B 158 VAL PRO THR LYS ASN PRO ASP GLY THR MET ASN LEU MET SEQRES 4 B 158 ASN TRP GLU CYS ALA ILE PRO GLY ALA ALA GLY THR PRO SEQRES 5 B 158 TRP ALA GLY GLY LEU PHE LYS LEU ARG MET LEU PHE LYS SEQRES 6 B 158 ASP ASP TYR PRO SER SER PRO PRO LYS CYS LYS PHE GLU SEQRES 7 B 158 PRO PRO LEU PHE HIS PRO ASN VAL TYR PRO SER GLY THR SEQRES 8 B 158 VAL CYS LEU SER ILE LEU GLU GLU ASP LYS ASP TRP ARG SEQRES 9 B 158 PRO ALA ILE THR ILE LYS GLN ILE LEU LEU GLY ILE GLN SEQRES 10 B 158 GLU LEU LEU ASN GLU PRO ASN ILE GLN ASP PRO ALA GLN SEQRES 11 B 158 ALA GLU ALA TYR THR ILE TYR ALA GLN ASN ARG VAL GLU SEQRES 12 B 158 TYR GLU LYS ARG VAL ARG ALA GLN ALA LYS LYS PHE ALA SEQRES 13 B 158 PRO SER SEQRES 1 C 158 GLY SER GLY ILE ALA LEU SER ARG LEU ALA GLN GLU ARG SEQRES 2 C 158 LYS ALA TRP ARG LYS ASP HIS PRO PHE GLY PHE VAL ALA SEQRES 3 C 158 VAL PRO THR LYS ASN PRO ASP GLY THR MET ASN LEU MET SEQRES 4 C 158 ASN TRP GLU CYS ALA ILE PRO GLY ALA ALA GLY THR PRO SEQRES 5 C 158 TRP ALA GLY GLY LEU PHE LYS LEU ARG MET LEU PHE LYS SEQRES 6 C 158 ASP ASP TYR PRO SER SER PRO PRO LYS CYS LYS PHE GLU SEQRES 7 C 158 PRO PRO LEU PHE HIS PRO ASN VAL TYR PRO SER GLY THR SEQRES 8 C 158 VAL CYS LEU SER ILE LEU GLU GLU ASP LYS ASP TRP ARG SEQRES 9 C 158 PRO ALA ILE THR ILE LYS GLN ILE LEU LEU GLY ILE GLN SEQRES 10 C 158 GLU LEU LEU ASN GLU PRO ASN ILE GLN ASP PRO ALA GLN SEQRES 11 C 158 ALA GLU ALA TYR THR ILE TYR ALA GLN ASN ARG VAL GLU SEQRES 12 C 158 TYR GLU LYS ARG VAL ARG ALA GLN ALA LYS LYS PHE ALA SEQRES 13 C 158 PRO SER SEQRES 1 D 158 GLY SER GLY ILE ALA LEU SER ARG LEU ALA GLN GLU ARG SEQRES 2 D 158 LYS ALA TRP ARG LYS ASP HIS PRO PHE GLY PHE VAL ALA SEQRES 3 D 158 VAL PRO THR LYS ASN PRO ASP GLY THR MET ASN LEU MET SEQRES 4 D 158 ASN TRP GLU CYS ALA ILE PRO GLY ALA ALA GLY THR PRO SEQRES 5 D 158 TRP ALA GLY GLY LEU PHE LYS LEU ARG MET LEU PHE LYS SEQRES 6 D 158 ASP ASP TYR PRO SER SER PRO PRO LYS CYS LYS PHE GLU SEQRES 7 D 158 PRO PRO LEU PHE HIS PRO ASN VAL TYR PRO SER GLY THR SEQRES 8 D 158 VAL CYS LEU SER ILE LEU GLU GLU ASP LYS ASP TRP ARG SEQRES 9 D 158 PRO ALA ILE THR ILE LYS GLN ILE LEU LEU GLY ILE GLN SEQRES 10 D 158 GLU LEU LEU ASN GLU PRO ASN ILE GLN ASP PRO ALA GLN SEQRES 11 D 158 ALA GLU ALA TYR THR ILE TYR ALA GLN ASN ARG VAL GLU SEQRES 12 D 158 TYR GLU LYS ARG VAL ARG ALA GLN ALA LYS LYS PHE ALA SEQRES 13 D 158 PRO SER SEQRES 1 E 7 ACE LEU ARG LEU ARG GLY CYS SEQRES 1 F 5 ACE ILE LYS GLN GLU SEQRES 1 G 7 ACE LEU ARG LEU ARG GLY CYS SEQRES 1 H 5 ACE ILE LYS GLN GLU SEQRES 1 I 7 ACE LEU ARG LEU ARG GLY CYS SEQRES 1 J 5 ACE ILE LYS GLN GLU SEQRES 1 K 7 ACE LEU ARG LEU ARG GLY CYS SEQRES 1 L 5 ACE ILE LYS GLN GLU HET ACE E 1 3 HET ACE F 1 3 HET ACE G 1 3 HET ACE H 1 3 HET ACE I 1 3 HET ACE J 1 3 HET ACE K 1 3 HET ACE L 1 3 HETNAM ACE ACETYL GROUP FORMUL 5 ACE 8(C2 H4 O) FORMUL 13 HOH *518(H2 O) HELIX 1 AA1 ALA A 5 ASP A 19 1 15 HELIX 2 AA2 LEU A 94 GLU A 98 5 5 HELIX 3 AA3 THR A 108 GLU A 122 1 15 HELIX 4 AA4 GLN A 130 ASN A 140 1 11 HELIX 5 AA5 ASN A 140 PHE A 155 1 16 HELIX 6 AA6 GLY B 3 ASP B 19 1 17 HELIX 7 AA7 LEU B 94 GLU B 98 5 5 HELIX 8 AA8 THR B 108 GLU B 122 1 15 HELIX 9 AA9 GLN B 130 ASN B 140 1 11 HELIX 10 AB1 ASN B 140 PHE B 155 1 16 HELIX 11 AB2 GLY C 3 ASP C 19 1 17 HELIX 12 AB3 LEU C 94 GLU C 98 5 5 HELIX 13 AB4 THR C 108 GLU C 122 1 15 HELIX 14 AB5 GLN C 130 ASN C 140 1 11 HELIX 15 AB6 ASN C 140 PHE C 155 1 16 HELIX 16 AB7 LEU D 6 ASP D 19 1 14 HELIX 17 AB8 LEU D 94 GLU D 98 5 5 HELIX 18 AB9 THR D 108 GLU D 122 1 15 HELIX 19 AC1 GLN D 130 ASN D 140 1 11 HELIX 20 AC2 ASN D 140 PHE D 155 1 16 SHEET 1 AA1 4 VAL A 25 LYS A 30 0 SHEET 2 AA1 4 MET A 36 PRO A 46 -1 O GLU A 42 N VAL A 27 SHEET 3 AA1 4 LEU A 57 LEU A 63 -1 O LEU A 60 N CYS A 43 SHEET 4 AA1 4 LYS A 74 PHE A 77 -1 O LYS A 76 N ARG A 61 SHEET 1 AA2 4 VAL B 25 LYS B 30 0 SHEET 2 AA2 4 MET B 36 PRO B 46 -1 O ASN B 40 N THR B 29 SHEET 3 AA2 4 LEU B 57 LEU B 63 -1 O LEU B 60 N CYS B 43 SHEET 4 AA2 4 LYS B 74 PHE B 77 -1 O LYS B 74 N LEU B 63 SHEET 1 AA3 4 VAL C 25 LYS C 30 0 SHEET 2 AA3 4 MET C 36 PRO C 46 -1 O ASN C 40 N THR C 29 SHEET 3 AA3 4 LEU C 57 LEU C 63 -1 O LEU C 60 N CYS C 43 SHEET 4 AA3 4 LYS C 74 PHE C 77 -1 O LYS C 74 N LEU C 63 SHEET 1 AA4 4 VAL D 25 LYS D 30 0 SHEET 2 AA4 4 MET D 36 PRO D 46 -1 O ASN D 40 N THR D 29 SHEET 3 AA4 4 LEU D 57 LEU D 63 -1 O LEU D 60 N CYS D 43 SHEET 4 AA4 4 LYS D 74 PHE D 77 -1 O LYS D 74 N LEU D 63 SSBOND 1 CYS A 93 CYS E 7 1555 1555 2.04 SSBOND 2 CYS B 93 CYS G 7 1555 1555 2.06 SSBOND 3 CYS C 93 CYS I 7 1555 1555 2.05 SSBOND 4 CYS D 93 CYS K 7 1555 1555 2.04 LINK C ACE E 1 N LEU E 2 1555 1555 1.33 LINK C ACE F 1 N ILE F 2 1555 1555 1.33 LINK C ACE G 1 N LEU G 2 1555 1555 1.33 LINK C ACE H 1 N ILE H 2 1555 1555 1.34 LINK C ACE I 1 N LEU I 2 1555 1555 1.34 LINK C ACE J 1 N ILE J 2 1555 1555 1.34 LINK C ACE K 1 N LEU K 2 1555 1555 1.33 LINK C ACE L 1 N ILE L 2 1555 1555 1.35 CISPEP 1 TYR A 68 PRO A 69 0 7.31 CISPEP 2 GLU A 78 PRO A 79 0 -0.38 CISPEP 3 TYR B 68 PRO B 69 0 11.49 CISPEP 4 GLU B 78 PRO B 79 0 0.55 CISPEP 5 TYR C 68 PRO C 69 0 8.60 CISPEP 6 GLU C 78 PRO C 79 0 -0.56 CISPEP 7 TYR D 68 PRO D 69 0 8.63 CISPEP 8 GLU D 78 PRO D 79 0 -2.54 CRYST1 94.700 38.700 97.800 90.00 118.90 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010560 0.000000 0.005829 0.00000 SCALE2 0.000000 0.025840 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011679 0.00000