HEADER TRANSFERASE 02-OCT-19 6SZJ
TITLE RIP2 KINASE CATALYTIC DOMAIN COMPLEX WITH
TITLE 2 5AMINO1TERTBUTYL3(3METHOXYPHENYL)1H PYRAZOLE4CARBOXAMIDE.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 2.7.11.1;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_TAXID: 9606;
SOURCE 4 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 7108
KEYWDS FRAGMENT BASED DRUG DESIGN (FBDD), RECEPTOR INTERACTING PROTEIN 2
KEYWDS 2 KINASE, RIPK2, RIP2K, RIP2, STRUCTURE BASED DRUG DESIGN (SBDD),
KEYWDS 3 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.A.CONVERY,A.K.CHARNLEY,L.SHEWCHUK
REVDAT 2 15-MAY-24 6SZJ 1 REMARK
REVDAT 1 04-DEC-19 6SZJ 0
JRNL AUTH C.D.HAFFNER,A.K.CHARNLEY,C.J.AQUINO,L.CASILLAS,M.A.CONVERY,
JRNL AUTH 2 J.A.COX,M.A.ELBAN,N.C.GOODWIN,P.J.GOUGH,P.A.HAILE,
JRNL AUTH 3 T.V.HUGHES,B.KNAPP-REED,C.KREATSOULAS,A.S.LAKDAWALA,H.LI,
JRNL AUTH 4 Y.LIAN,D.LIPSHUTZ,J.F.MEHLMANN,M.OUELLETTE,J.ROMANO,
JRNL AUTH 5 L.SHEWCHUK,A.SHU,B.J.VOTTA,H.ZHOU,J.BERTIN,R.W.MARQUIS
JRNL TITL DISCOVERY OF PYRAZOLOCARBOXAMIDES AS POTENT AND SELECTIVE
JRNL TITL 2 RECEPTOR INTERACTING PROTEIN 2 (RIP2) KINASE INHIBITORS.
JRNL REF ACS MED.CHEM.LETT. V. 10 1518 2019
JRNL REFN ISSN 1948-5875
JRNL PMID 31749904
JRNL DOI 10.1021/ACSMEDCHEMLETT.9B00141
REMARK 2
REMARK 2 RESOLUTION. 2.53 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0158
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5
REMARK 3 NUMBER OF REFLECTIONS : 34809
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.191
REMARK 3 R VALUE (WORKING SET) : 0.189
REMARK 3 FREE R VALUE : 0.241
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1452
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.53
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.60
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2526
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92
REMARK 3 BIN R VALUE (WORKING SET) : 0.2960
REMARK 3 BIN FREE R VALUE SET COUNT : 102
REMARK 3 BIN FREE R VALUE : 0.3640
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 4493
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 43
REMARK 3 SOLVENT ATOMS : 172
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.73
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.50000
REMARK 3 B22 (A**2) : 1.50000
REMARK 3 B33 (A**2) : -4.88000
REMARK 3 B12 (A**2) : 0.75000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.264
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.228
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.188
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.960
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4664 ; 0.009 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6357 ; 1.467 ; 1.976
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 557 ; 3.161 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 208 ;32.218 ;23.462
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 763 ;11.028 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ; 6.536 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.110 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3584 ; 0.006 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY
REMARK 4
REMARK 4 6SZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-19.
REMARK 100 THE DEPOSITION ID IS D_1292104613.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 10-FEB-10
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I02
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36439
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530
REMARK 200 RESOLUTION RANGE LOW (A) : 40.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 3.800
REMARK 200 R MERGE (I) : 0.05800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.4500
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 3.90
REMARK 200 R MERGE FOR SHELL (I) : 0.34100
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.270
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: REFMAC
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 67.50
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.78
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BUFFER (MES OR HEPES PH6.8-7.5),
REMARK 280 12-28% PEG 400, 50-250MM CACL2, 0-200MM NACL, PH 7, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+2/3
REMARK 290 3555 -X+Y,-X,Z+1/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+1/3
REMARK 290 6555 -X,-X+Y,-Z+2/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.39200
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.69600
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 35.69600
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.39200
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 MET A 1
REMARK 465 ASN A 2
REMARK 465 GLY A 3
REMARK 465 GLU A 4
REMARK 465 HIS A 50
REMARK 465 ILE A 51
REMARK 465 HIS A 52
REMARK 465 SER A 168
REMARK 465 LYS A 169
REMARK 465 TRP A 170
REMARK 465 ARG A 171
REMARK 465 MET A 172
REMARK 465 MET A 173
REMARK 465 SER A 174
REMARK 465 LEU A 175
REMARK 465 SER A 176
REMARK 465 GLN A 177
REMARK 465 SER A 178
REMARK 465 ARG A 179
REMARK 465 SER A 180
REMARK 465 SER A 181
REMARK 465 LYS A 182
REMARK 465 SER A 183
REMARK 465 ALA A 184
REMARK 465 PRO A 185
REMARK 465 GLU A 186
REMARK 465 GLY A 187
REMARK 465 LYS A 203
REMARK 465 SER A 204
REMARK 465 ARG A 205
REMARK 465 ALA A 206
REMARK 465 GLY B 0
REMARK 465 MET B 1
REMARK 465 ASN B 2
REMARK 465 GLY B 3
REMARK 465 GLU B 4
REMARK 465 HIS B 50
REMARK 465 ILE B 51
REMARK 465 HIS B 52
REMARK 465 THR B 53
REMARK 465 PRO B 54
REMARK 465 LEU B 55
REMARK 465 LYS B 169
REMARK 465 TRP B 170
REMARK 465 ARG B 171
REMARK 465 MET B 172
REMARK 465 MET B 173
REMARK 465 SER B 174
REMARK 465 LEU B 175
REMARK 465 SER B 176
REMARK 465 GLN B 177
REMARK 465 SER B 178
REMARK 465 ARG B 179
REMARK 465 SER B 180
REMARK 465 SER B 181
REMARK 465 LYS B 182
REMARK 465 SER B 183
REMARK 465 ALA B 184
REMARK 465 PRO B 185
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2
REMARK 470 THR A 53 OG1 CG2
REMARK 470 LEU A 55 CG CD1 CD2
REMARK 470 LEU A 56 CG CD1 CD2
REMARK 470 ASP A 57 CG OD1 OD2
REMARK 470 GLU A 59 CG CD OE1 OE2
REMARK 470 LYS A 61 CG CD CE NZ
REMARK 470 GLU A 199 CG CD OE1 OE2
REMARK 470 GLN A 202 CG CD OE1 NE2
REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2
REMARK 470 LEU B 56 CG CD1 CD2
REMARK 470 ASP B 57 CG OD1 OD2
REMARK 470 GLU B 59 CG CD OE1 OE2
REMARK 470 GLU B 186 CG CD OE1 OE2
REMARK 470 GLN B 202 CG CD OE1 NE2
REMARK 470 LYS B 203 CG CD CE NZ
REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 O HOH B 542 O HOH B 573 1.90
REMARK 500 O HOH A 555 O HOH A 578 1.94
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 21 96.77 -55.96
REMARK 500 LEU A 24 -57.01 -122.51
REMARK 500 LEU A 55 -130.42 55.31
REMARK 500 ALA A 73 33.85 -95.80
REMARK 500 ASP A 146 35.24 -145.20
REMARK 500 ARG A 225 15.64 59.23
REMARK 500 PHE A 229 68.40 60.64
REMARK 500 ASP B 146 31.57 -143.28
REMARK 500 ASP B 164 85.71 64.51
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue M5W A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue M5W B 402
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 6SZE RELATED DB: PDB
DBREF 6SZJ A 1 310 UNP O43353 RIPK2_HUMAN 1 310
DBREF 6SZJ B 1 310 UNP O43353 RIPK2_HUMAN 1 310
SEQADV 6SZJ GLY A 0 UNP O43353 EXPRESSION TAG
SEQADV 6SZJ GLY B 0 UNP O43353 EXPRESSION TAG
SEQRES 1 A 311 GLY MET ASN GLY GLU ALA ILE CYS SER ALA LEU PRO THR
SEQRES 2 A 311 ILE PRO TYR HIS LYS LEU ALA ASP LEU ARG TYR LEU SER
SEQRES 3 A 311 ARG GLY ALA SER GLY THR VAL SER SER ALA ARG HIS ALA
SEQRES 4 A 311 ASP TRP ARG VAL GLN VAL ALA VAL LYS HIS LEU HIS ILE
SEQRES 5 A 311 HIS THR PRO LEU LEU ASP SER GLU ARG LYS ASP VAL LEU
SEQRES 6 A 311 ARG GLU ALA GLU ILE LEU HIS LYS ALA ARG PHE SER TYR
SEQRES 7 A 311 ILE LEU PRO ILE LEU GLY ILE CYS ASN GLU PRO GLU PHE
SEQRES 8 A 311 LEU GLY ILE VAL THR GLU TYR MET PRO ASN GLY SER LEU
SEQRES 9 A 311 ASN GLU LEU LEU HIS ARG LYS THR GLU TYR PRO ASP VAL
SEQRES 10 A 311 ALA TRP PRO LEU ARG PHE ARG ILE LEU HIS GLU ILE ALA
SEQRES 11 A 311 LEU GLY VAL ASN TYR LEU HIS ASN MET THR PRO PRO LEU
SEQRES 12 A 311 LEU HIS HIS ASP LEU LYS THR GLN ASN ILE LEU LEU ASP
SEQRES 13 A 311 ASN GLU PHE HIS VAL LYS ILE ALA ASP PHE GLY LEU SER
SEQRES 14 A 311 LYS TRP ARG MET MET SER LEU SER GLN SER ARG SER SER
SEQRES 15 A 311 LYS SER ALA PRO GLU GLY GLY THR ILE ILE TYR MET PRO
SEQRES 16 A 311 PRO GLU ASN TYR GLU PRO GLY GLN LYS SER ARG ALA SER
SEQRES 17 A 311 ILE LYS HIS ASP ILE TYR SER TYR ALA VAL ILE THR TRP
SEQRES 18 A 311 GLU VAL LEU SER ARG LYS GLN PRO PHE GLU ASP VAL THR
SEQRES 19 A 311 ASN PRO LEU GLN ILE MET TYR SER VAL SER GLN GLY HIS
SEQRES 20 A 311 ARG PRO VAL ILE ASN GLU GLU SER LEU PRO TYR ASP ILE
SEQRES 21 A 311 PRO HIS ARG ALA ARG MET ILE SER LEU ILE GLU SER GLY
SEQRES 22 A 311 TRP ALA GLN ASN PRO ASP GLU ARG PRO SER PHE LEU LYS
SEQRES 23 A 311 CYS LEU ILE GLU LEU GLU PRO VAL LEU ARG THR PHE GLU
SEQRES 24 A 311 GLU ILE THR PHE LEU GLU ALA VAL ILE GLN LEU LYS
SEQRES 1 B 311 GLY MET ASN GLY GLU ALA ILE CYS SER ALA LEU PRO THR
SEQRES 2 B 311 ILE PRO TYR HIS LYS LEU ALA ASP LEU ARG TYR LEU SER
SEQRES 3 B 311 ARG GLY ALA SER GLY THR VAL SER SER ALA ARG HIS ALA
SEQRES 4 B 311 ASP TRP ARG VAL GLN VAL ALA VAL LYS HIS LEU HIS ILE
SEQRES 5 B 311 HIS THR PRO LEU LEU ASP SER GLU ARG LYS ASP VAL LEU
SEQRES 6 B 311 ARG GLU ALA GLU ILE LEU HIS LYS ALA ARG PHE SER TYR
SEQRES 7 B 311 ILE LEU PRO ILE LEU GLY ILE CYS ASN GLU PRO GLU PHE
SEQRES 8 B 311 LEU GLY ILE VAL THR GLU TYR MET PRO ASN GLY SER LEU
SEQRES 9 B 311 ASN GLU LEU LEU HIS ARG LYS THR GLU TYR PRO ASP VAL
SEQRES 10 B 311 ALA TRP PRO LEU ARG PHE ARG ILE LEU HIS GLU ILE ALA
SEQRES 11 B 311 LEU GLY VAL ASN TYR LEU HIS ASN MET THR PRO PRO LEU
SEQRES 12 B 311 LEU HIS HIS ASP LEU LYS THR GLN ASN ILE LEU LEU ASP
SEQRES 13 B 311 ASN GLU PHE HIS VAL LYS ILE ALA ASP PHE GLY LEU SER
SEQRES 14 B 311 LYS TRP ARG MET MET SER LEU SER GLN SER ARG SER SER
SEQRES 15 B 311 LYS SER ALA PRO GLU GLY GLY THR ILE ILE TYR MET PRO
SEQRES 16 B 311 PRO GLU ASN TYR GLU PRO GLY GLN LYS SER ARG ALA SER
SEQRES 17 B 311 ILE LYS HIS ASP ILE TYR SER TYR ALA VAL ILE THR TRP
SEQRES 18 B 311 GLU VAL LEU SER ARG LYS GLN PRO PHE GLU ASP VAL THR
SEQRES 19 B 311 ASN PRO LEU GLN ILE MET TYR SER VAL SER GLN GLY HIS
SEQRES 20 B 311 ARG PRO VAL ILE ASN GLU GLU SER LEU PRO TYR ASP ILE
SEQRES 21 B 311 PRO HIS ARG ALA ARG MET ILE SER LEU ILE GLU SER GLY
SEQRES 22 B 311 TRP ALA GLN ASN PRO ASP GLU ARG PRO SER PHE LEU LYS
SEQRES 23 B 311 CYS LEU ILE GLU LEU GLU PRO VAL LEU ARG THR PHE GLU
SEQRES 24 B 311 GLU ILE THR PHE LEU GLU ALA VAL ILE GLN LEU LYS
HET M5W A 401 21
HET CA B 401 1
HET M5W B 402 21
HETNAM M5W 5-AMINO-1-~{TERT}-BUTYL-3-(3-METHOXYPHENYL)PYRAZOLE-4-
HETNAM 2 M5W CARBOXAMIDE
HETNAM CA CALCIUM ION
FORMUL 3 M5W 2(C15 H20 N4 O2)
FORMUL 4 CA CA 2+
FORMUL 6 HOH *172(H2 O)
HELIX 1 AA1 PRO A 14 HIS A 16 5 3
HELIX 2 AA2 SER A 58 ALA A 73 1 16
HELIX 3 AA3 SER A 102 ARG A 109 1 8
HELIX 4 AA4 ALA A 117 ASN A 137 1 21
HELIX 5 AA5 LYS A 148 GLN A 150 5 3
HELIX 6 AA6 PRO A 194 TYR A 198 5 5
HELIX 7 AA7 LYS A 209 ARG A 225 1 17
HELIX 8 AA8 ASN A 234 GLN A 244 1 11
HELIX 9 AA9 HIS A 261 TRP A 273 1 13
HELIX 10 AB1 ASN A 276 ARG A 280 5 5
HELIX 11 AB2 SER A 282 ARG A 295 1 14
HELIX 12 AB3 GLU A 298 LYS A 310 1 13
HELIX 13 AB4 PRO B 14 HIS B 16 5 3
HELIX 14 AB5 GLU B 59 ALA B 73 1 15
HELIX 15 AB6 SER B 102 ARG B 109 1 8
HELIX 16 AB7 ALA B 117 ASN B 137 1 21
HELIX 17 AB8 LYS B 148 GLN B 150 5 3
HELIX 18 AB9 PRO B 194 TYR B 198 5 5
HELIX 19 AC1 GLY B 201 ALA B 206 1 6
HELIX 20 AC2 LYS B 209 ARG B 225 1 17
HELIX 21 AC3 ASN B 234 GLY B 245 1 12
HELIX 22 AC4 HIS B 261 TRP B 273 1 13
HELIX 23 AC5 ASN B 276 ARG B 280 5 5
HELIX 24 AC6 SER B 282 THR B 296 1 15
HELIX 25 AC7 GLU B 298 LYS B 310 1 13
SHEET 1 AA1 2 CYS A 7 ALA A 9 0
SHEET 2 AA1 2 CYS B 7 ALA B 9 -1 O SER B 8 N SER A 8
SHEET 1 AA2 5 LEU A 18 ARG A 26 0
SHEET 2 AA2 5 THR A 31 HIS A 37 -1 O VAL A 32 N SER A 25
SHEET 3 AA2 5 GLN A 43 HIS A 48 -1 O HIS A 48 N THR A 31
SHEET 4 AA2 5 LEU A 91 GLU A 96 -1 O THR A 95 N ALA A 45
SHEET 5 AA2 5 ILE A 81 ASN A 86 -1 N CYS A 85 O GLY A 92
SHEET 1 AA3 2 ILE A 152 LEU A 154 0
SHEET 2 AA3 2 VAL A 160 ILE A 162 -1 O LYS A 161 N LEU A 153
SHEET 1 AA4 5 LEU B 18 GLY B 27 0
SHEET 2 AA4 5 GLY B 30 HIS B 37 -1 O ARG B 36 N ALA B 19
SHEET 3 AA4 5 GLN B 43 HIS B 48 -1 O VAL B 44 N ALA B 35
SHEET 4 AA4 5 LEU B 91 GLU B 96 -1 O THR B 95 N ALA B 45
SHEET 5 AA4 5 ILE B 81 ASN B 86 -1 N CYS B 85 O GLY B 92
SHEET 1 AA5 2 ILE B 152 LEU B 154 0
SHEET 2 AA5 2 VAL B 160 ILE B 162 -1 O LYS B 161 N LEU B 153
CISPEP 1 THR A 139 PRO A 140 0 1.34
CISPEP 2 GLY A 166 LEU A 167 0 0.85
CISPEP 3 THR B 139 PRO B 140 0 -0.75
SITE 1 AC1 10 SER A 25 VAL A 32 ALA A 45 VAL A 46
SITE 2 AC1 10 LYS A 47 ILE A 93 THR A 95 GLU A 96
SITE 3 AC1 10 TYR A 97 MET A 98
SITE 1 AC2 2 GLU A 289 LYS B 310
SITE 1 AC3 12 SER B 25 ALA B 45 VAL B 46 LYS B 47
SITE 2 AC3 12 ILE B 93 THR B 95 GLU B 96 TYR B 97
SITE 3 AC3 12 MET B 98 LEU B 153 ALA B 163 HOH B 546
CRYST1 132.182 132.182 107.088 90.00 90.00 120.00 P 32 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007565 0.004368 0.000000 0.00000
SCALE2 0.000000 0.008736 0.000000 0.00000
SCALE3 0.000000 0.000000 0.009338 0.00000