HEADER OXIDOREDUCTASE 03-OCT-19 6T0K TITLE CRYSTAL STRUCTURE OF CYP124 IN COMPLEX WITH INHIBITOR CARBETHOXYHEXYL TITLE 2 IMIDAZOLE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYP124 IN COMPLEX WITH INHIBITOR CARBETHOXYHEXYL IMIDAZOLE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYTOCHROME, P450, CYP, CYP124, 124, OXIDOREDUCTASE, IMIDAZOLE, KEYWDS 2 CARBETHOXY, HEXYL, CARBETHOXYHEXYL, CHIMI, INHIBITION, TUBERCULOSIS, KEYWDS 3 MYCOBACTERIUM TUBERCULOSIS EXPDTA X-RAY DIFFRACTION AUTHOR S.BUKHDRUKER,E.MARIN,T.VARAKSA,A.GILEP,N.STRUSHKEVICH,V.BORSHCHEVSKIY REVDAT 6 07-FEB-24 6T0K 1 REMARK REVDAT 5 25-JAN-23 6T0K 1 REMARK REVDAT 4 17-FEB-21 6T0K 1 JRNL SITE ATOM REVDAT 3 03-FEB-21 6T0K 1 JRNL REVDAT 2 13-JAN-21 6T0K 1 JRNL REVDAT 1 14-OCT-20 6T0K 0 JRNL AUTH T.VARAKSA,S.BUKHDRUKER,I.GRABOVEC,E.MARIN,A.KAVALEUSKI, JRNL AUTH 2 A.GUSACH,K.KOVALEV,I.MASLOV,A.LUGININA,D.ZABELSKII, JRNL AUTH 3 R.ASTASHKIN,M.SHEVTSOV,S.SMOLSKAYA,A.KAVALEUSKAYA, JRNL AUTH 4 P.SHABUNYA,A.BARANOVSKY,V.DOLGOPALETS,Y.CHARNOU,A.SAVACHKA, JRNL AUTH 5 R.LITVINOVSKAYA,A.HURSKI,E.SHEVCHENKO,A.ROGACHEV,A.MISHIN, JRNL AUTH 6 V.GORDELIY,A.GABRIELIAN,D.E.HURT,B.NIKONENKO,K.MAJOROV, JRNL AUTH 7 A.APT,A.ROSENTHAL,A.GILEP,V.BORSHCHEVSKIY,N.STRUSHKEVICH JRNL TITL METABOLIC FATE OF HUMAN IMMUNOACTIVE STEROLS IN JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.MOL.BIOL. V. 433 66763 2021 JRNL REFN ESSN 1089-8638 JRNL PMID 33359098 JRNL DOI 10.1016/J.JMB.2020.166763 REMARK 2 REMARK 2 RESOLUTION. 1.18 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.18 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 133369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.132 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 6629 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5200 - 3.6600 0.99 4346 199 0.1278 0.1440 REMARK 3 2 3.6600 - 2.9100 0.99 4311 211 0.1112 0.1223 REMARK 3 3 2.9100 - 2.5400 0.99 4257 239 0.1206 0.1406 REMARK 3 4 2.5400 - 2.3100 1.00 4304 221 0.1150 0.1322 REMARK 3 5 2.3100 - 2.1400 0.99 4244 200 0.1105 0.1371 REMARK 3 6 2.1400 - 2.0200 0.99 4206 246 0.1066 0.1270 REMARK 3 7 2.0200 - 1.9200 0.99 4316 208 0.1014 0.1307 REMARK 3 8 1.9200 - 1.8300 1.00 4269 205 0.1040 0.1420 REMARK 3 9 1.8300 - 1.7600 1.00 4260 228 0.1037 0.1370 REMARK 3 10 1.7600 - 1.7000 1.00 4276 225 0.1033 0.1396 REMARK 3 11 1.7000 - 1.6500 1.00 4224 243 0.1028 0.1306 REMARK 3 12 1.6500 - 1.6000 1.00 4274 217 0.1013 0.1448 REMARK 3 13 1.6000 - 1.5600 0.99 4232 226 0.1029 0.1434 REMARK 3 14 1.5600 - 1.5200 1.00 4268 229 0.1088 0.1482 REMARK 3 15 1.5200 - 1.4900 1.00 4248 218 0.1157 0.1510 REMARK 3 16 1.4900 - 1.4600 1.00 4260 230 0.1297 0.1736 REMARK 3 17 1.4600 - 1.4300 1.00 4241 221 0.1545 0.1872 REMARK 3 18 1.4300 - 1.4000 0.99 4184 235 0.1737 0.2071 REMARK 3 19 1.4000 - 1.3700 0.99 4225 246 0.1843 0.2135 REMARK 3 20 1.3700 - 1.3500 0.99 4269 215 0.1901 0.2267 REMARK 3 21 1.3500 - 1.3300 0.99 4219 209 0.1941 0.2592 REMARK 3 22 1.3300 - 1.3100 0.98 4223 219 0.2137 0.2225 REMARK 3 23 1.3100 - 1.2900 0.99 4196 203 0.2199 0.2562 REMARK 3 24 1.2900 - 1.2700 0.99 4261 243 0.2254 0.2696 REMARK 3 25 1.2700 - 1.2500 0.99 4213 213 0.2398 0.2577 REMARK 3 26 1.2500 - 1.2400 0.99 4242 221 0.2397 0.2496 REMARK 3 27 1.2400 - 1.2200 0.99 4213 220 0.2469 0.2553 REMARK 3 28 1.2200 - 1.2100 0.99 4193 255 0.2615 0.2710 REMARK 3 29 1.2100 - 1.1900 0.99 4236 212 0.2817 0.2935 REMARK 3 30 1.1900 - 1.1800 0.82 3530 172 0.2953 0.3202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.125 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4396 REMARK 3 ANGLE : 0.892 6098 REMARK 3 CHIRALITY : 0.080 627 REMARK 3 PLANARITY : 0.007 849 REMARK 3 DIHEDRAL : 16.614 1666 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104001. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20171218 REMARK 200 DATA SCALING SOFTWARE : XSCALE 20190315 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 183003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.060 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 4.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 30.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 23.10 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6T0F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M BISTRIS, 0.2 M REMARK 280 MAGNESIUM CHLORIDE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.51500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -2 N CA CB CG ND1 CD2 CE1 REMARK 470 HIS A -2 NE2 REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 127 NE CZ NH1 NH2 REMARK 470 LYS A 332 CE NZ REMARK 470 GLU A 350 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 50 63.66 -152.25 REMARK 500 LEU A 167 -60.58 -144.68 REMARK 500 LEU A 205 -67.21 -106.45 REMARK 500 ALA A 206 143.25 -170.09 REMARK 500 ASN A 269 -44.85 -131.40 REMARK 500 ASP A 296 70.64 -153.06 REMARK 500 SER A 313 68.61 33.83 REMARK 500 PRO A 367 44.10 -82.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1264 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A1265 DISTANCE = 6.28 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GOL A 503 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 379 SG REMARK 620 2 HEM A 501 NA 95.5 REMARK 620 3 HEM A 501 NB 86.7 90.4 REMARK 620 4 HEM A 501 NC 85.4 178.8 88.8 REMARK 620 5 HEM A 501 ND 95.2 89.6 178.1 91.1 REMARK 620 6 M65 A 502 N1 172.8 86.1 86.2 92.9 91.9 REMARK 620 7 M65 A 502 N1 176.3 85.0 89.6 94.1 88.4 3.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 678 O REMARK 620 2 HOH A 799 O 92.2 REMARK 620 3 HOH A1087 O 93.7 86.2 REMARK 620 4 HOH A1104 O 81.3 95.1 174.9 REMARK 620 5 HOH A1239 O 170.8 90.4 95.2 89.7 REMARK 620 6 HOH A1260 O 90.2 176.2 90.7 88.1 87.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 508 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 661 O REMARK 620 2 HOH A 803 O 87.8 REMARK 620 3 HOH A1103 O 91.3 100.0 REMARK 620 4 HOH A1137 O 99.1 56.4 153.4 REMARK 620 5 HOH A1137 O 77.9 88.1 166.3 39.2 REMARK 620 6 HOH A1183 O 67.9 150.8 96.7 110.0 71.6 REMARK 620 7 HOH A1252 O 167.2 88.3 101.4 68.7 89.8 111.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue M65 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 509 DBREF 6T0K A 1 428 UNP P9WPP3 CP124_MYCTU 1 428 SEQADV 6T0K MET A -6 UNP P9WPP3 INITIATING METHIONINE SEQADV 6T0K HIS A -5 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0K HIS A -4 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0K HIS A -3 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0K HIS A -2 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0K HIS A -1 UNP P9WPP3 EXPRESSION TAG SEQADV 6T0K HIS A 0 UNP P9WPP3 EXPRESSION TAG SEQRES 1 A 435 MET HIS HIS HIS HIS HIS HIS MET GLY LEU ASN THR ALA SEQRES 2 A 435 ILE ALA THR ARG VAL ASN GLY THR PRO PRO PRO GLU VAL SEQRES 3 A 435 PRO ILE ALA ASP ILE GLU LEU GLY SER LEU ASP PHE TRP SEQRES 4 A 435 ALA LEU ASP ASP ASP VAL ARG ASP GLY ALA PHE ALA THR SEQRES 5 A 435 LEU ARG ARG GLU ALA PRO ILE SER PHE TRP PRO THR ILE SEQRES 6 A 435 GLU LEU PRO GLY PHE VAL ALA GLY ASN GLY HIS TRP ALA SEQRES 7 A 435 LEU THR LYS TYR ASP ASP VAL PHE TYR ALA SER ARG HIS SEQRES 8 A 435 PRO ASP ILE PHE SER SER TYR PRO ASN ILE THR ILE ASN SEQRES 9 A 435 ASP GLN THR PRO GLU LEU ALA GLU TYR PHE GLY SER MET SEQRES 10 A 435 ILE VAL LEU ASP ASP PRO ARG HIS GLN ARG LEU ARG SER SEQRES 11 A 435 ILE VAL SER ARG ALA PHE THR PRO LYS VAL VAL ALA ARG SEQRES 12 A 435 ILE GLU ALA ALA VAL ARG ASP ARG ALA HIS ARG LEU VAL SEQRES 13 A 435 SER SER MET ILE ALA ASN ASN PRO ASP ARG GLN ALA ASP SEQRES 14 A 435 LEU VAL SER GLU LEU ALA GLY PRO LEU PRO LEU GLN ILE SEQRES 15 A 435 ILE CYS ASP MET MET GLY ILE PRO LYS ALA ASP HIS GLN SEQRES 16 A 435 ARG ILE PHE HIS TRP THR ASN VAL ILE LEU GLY PHE GLY SEQRES 17 A 435 ASP PRO ASP LEU ALA THR ASP PHE ASP GLU PHE MET GLN SEQRES 18 A 435 VAL SER ALA ASP ILE GLY ALA TYR ALA THR ALA LEU ALA SEQRES 19 A 435 GLU ASP ARG ARG VAL ASN HIS HIS ASP ASP LEU THR SER SEQRES 20 A 435 SER LEU VAL GLU ALA GLU VAL ASP GLY GLU ARG LEU SER SEQRES 21 A 435 SER ARG GLU ILE ALA SER PHE PHE ILE LEU LEU VAL VAL SEQRES 22 A 435 ALA GLY ASN GLU THR THR ARG ASN ALA ILE THR HIS GLY SEQRES 23 A 435 VAL LEU ALA LEU SER ARG TYR PRO GLU GLN ARG ASP ARG SEQRES 24 A 435 TRP TRP SER ASP PHE ASP GLY LEU ALA PRO THR ALA VAL SEQRES 25 A 435 GLU GLU ILE VAL ARG TRP ALA SER PRO VAL VAL TYR MET SEQRES 26 A 435 ARG ARG THR LEU THR GLN ASP ILE GLU LEU ARG GLY THR SEQRES 27 A 435 LYS MET ALA ALA GLY ASP LYS VAL SER LEU TRP TYR CYS SEQRES 28 A 435 SER ALA ASN ARG ASP GLU SER LYS PHE ALA ASP PRO TRP SEQRES 29 A 435 THR PHE ASP LEU ALA ARG ASN PRO ASN PRO HIS LEU GLY SEQRES 30 A 435 PHE GLY GLY GLY GLY ALA HIS PHE CYS LEU GLY ALA ASN SEQRES 31 A 435 LEU ALA ARG ARG GLU ILE ARG VAL ALA PHE ASP GLU LEU SEQRES 32 A 435 ARG ARG GLN MET PRO ASP VAL VAL ALA THR GLU GLU PRO SEQRES 33 A 435 ALA ARG LEU LEU SER GLN PHE ILE HIS GLY ILE LYS THR SEQRES 34 A 435 LEU PRO VAL THR TRP SER HET HEM A 501 43 HET M65 A 502 32 HET GOL A 503 4 HET GOL A 504 6 HET GOL A 505 12 HET GOL A 506 6 HET MG A 507 1 HET MG A 508 1 HET CL A 509 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM M65 ETHYL 7-IMIDAZOL-1-YLHEPTANOATE HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 M65 C12 H20 N2 O2 FORMUL 4 GOL 4(C3 H8 O3) FORMUL 8 MG 2(MG 2+) FORMUL 10 CL CL 1- FORMUL 11 HOH *665(H2 O) HELIX 1 AA1 PRO A 20 ILE A 24 5 5 HELIX 2 AA2 SER A 28 ALA A 33 1 6 HELIX 3 AA3 ASP A 35 ALA A 50 1 16 HELIX 4 AA4 LYS A 74 HIS A 84 1 11 HELIX 5 AA5 THR A 100 GLU A 105 1 6 HELIX 6 AA6 SER A 109 LEU A 113 5 5 HELIX 7 AA7 PRO A 116 SER A 126 1 11 HELIX 8 AA8 ARG A 127 PHE A 129 5 3 HELIX 9 AA9 THR A 130 ARG A 136 1 7 HELIX 10 AB1 ILE A 137 ASN A 155 1 19 HELIX 11 AB2 LEU A 163 LEU A 167 1 5 HELIX 12 AB3 GLY A 169 GLY A 181 1 13 HELIX 13 AB4 PRO A 183 ALA A 185 5 3 HELIX 14 AB5 ASP A 186 PHE A 200 1 15 HELIX 15 AB6 ASP A 208 ASN A 233 1 26 HELIX 16 AB7 ASP A 237 ALA A 245 1 9 HELIX 17 AB8 SER A 253 GLY A 268 1 16 HELIX 18 AB9 ASN A 269 TYR A 286 1 18 HELIX 19 AC1 TYR A 286 SER A 295 1 10 HELIX 20 AC2 ASP A 296 SER A 313 1 18 HELIX 21 AC3 TYR A 343 ASN A 347 1 5 HELIX 22 AC4 GLY A 381 MET A 400 1 20 SHEET 1 AA1 5 ILE A 52 TRP A 55 0 SHEET 2 AA1 5 HIS A 69 LEU A 72 -1 O ALA A 71 N SER A 53 SHEET 3 AA1 5 LYS A 338 TRP A 342 1 O SER A 340 N LEU A 72 SHEET 4 AA1 5 TYR A 317 LEU A 322 -1 N MET A 318 O LEU A 341 SHEET 5 AA1 5 PHE A 88 SER A 89 -1 N SER A 89 O THR A 321 SHEET 1 AA2 3 GLN A 160 ASP A 162 0 SHEET 2 AA2 3 PRO A 424 THR A 426 -1 O VAL A 425 N ALA A 161 SHEET 3 AA2 3 VAL A 404 ALA A 405 -1 N VAL A 404 O THR A 426 SHEET 1 AA3 2 GLU A 246 VAL A 247 0 SHEET 2 AA3 2 GLU A 250 ARG A 251 -1 O GLU A 250 N VAL A 247 SHEET 1 AA4 2 ILE A 326 LEU A 328 0 SHEET 2 AA4 2 THR A 331 MET A 333 -1 O MET A 333 N ILE A 326 SHEET 1 AA5 2 ALA A 410 ARG A 411 0 SHEET 2 AA5 2 ILE A 420 THR A 422 -1 O LYS A 421 N ALA A 410 LINK SG CYS A 379 FE HEM A 501 1555 1555 2.32 LINK FE HEM A 501 N1 AM65 A 502 1555 1555 2.10 LINK FE HEM A 501 N1 BM65 A 502 1555 1555 2.01 LINK MG MG A 507 O HOH A 678 1555 1555 2.12 LINK MG MG A 507 O HOH A 799 1555 1555 2.05 LINK MG MG A 507 O BHOH A1087 1555 1555 2.06 LINK MG MG A 507 O HOH A1104 1555 1555 2.07 LINK MG MG A 507 O HOH A1239 1555 1555 2.09 LINK MG MG A 507 O HOH A1260 1555 1555 2.07 LINK MG MG A 508 O HOH A 661 1555 1555 2.24 LINK MG MG A 508 O HOH A 803 1555 1555 1.99 LINK MG MG A 508 O HOH A1103 1555 1555 1.99 LINK MG MG A 508 O AHOH A1137 1555 1555 2.50 LINK MG MG A 508 O BHOH A1137 1555 1555 2.14 LINK MG MG A 508 O HOH A1183 1555 1555 2.21 LINK MG MG A 508 O HOH A1252 1555 2645 2.04 CISPEP 1 TYR A 91 PRO A 92 0 10.14 CISPEP 2 ASP A 115 PRO A 116 0 6.02 CISPEP 3 ASN A 364 PRO A 365 0 -0.96 CISPEP 4 ASN A 364 PRO A 365 0 2.69 SITE 1 AC1 24 MET A 110 ILE A 111 HIS A 118 ARG A 122 SITE 2 AC1 24 LEU A 264 ALA A 267 GLY A 268 THR A 271 SITE 3 AC1 24 THR A 272 PRO A 314 VAL A 315 ARG A 320 SITE 4 AC1 24 TYR A 343 GLY A 370 PHE A 371 GLY A 372 SITE 5 AC1 24 HIS A 377 CYS A 379 GLY A 381 M65 A 502 SITE 6 AC1 24 HOH A 662 HOH A 737 HOH A 801 HOH A 839 SITE 1 AC2 8 PHE A 107 ILE A 197 VAL A 266 ALA A 267 SITE 2 AC2 8 THR A 271 HEM A 501 GOL A 504 HOH A 472 SITE 1 AC3 3 TRP A 294 ARG A 397 HOH A 884 SITE 1 AC4 8 ASN A 93 THR A 95 ASN A 97 GLN A 99 SITE 2 AC4 8 PHE A 107 M65 A 502 GOL A 506 HOH A 472 SITE 1 AC5 12 ASP A 36 ASP A 40 HIS A 278 ARG A 285 SITE 2 AC5 12 TRP A 311 HIS A 418 CL A 509 HOH A 606 SITE 3 AC5 12 HOH A 645 HOH A 840 HOH A 878 HOH A1114 SITE 1 AC6 10 PHE A 63 THR A 95 ILE A 197 LEU A 198 SITE 2 AC6 10 PHE A 200 PHE A 416 GOL A 504 HOH A 642 SITE 3 AC6 10 HOH A 814 HOH A 831 SITE 1 AC7 6 HOH A 678 HOH A 799 HOH A1087 HOH A1104 SITE 2 AC7 6 HOH A1239 HOH A1260 SITE 1 AC8 5 HOH A 661 HOH A 803 HOH A1103 HOH A1137 SITE 2 AC8 5 HOH A1183 SITE 1 AC9 5 ARG A 285 TRP A 311 GOL A 505 HOH A 699 SITE 2 AC9 5 HOH A 878 CRYST1 51.620 75.030 56.520 90.00 106.92 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019372 0.000000 0.005894 0.00000 SCALE2 0.000000 0.013328 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018494 0.00000