HEADER HYDROLASE 08-OCT-19 6T2K TITLE FURANO[2,3-D]PRYMIDINE AMIDES AS NOTUM INHIBITORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HNOTUM; COMPND 5 EC: 3.1.1.98; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NOTUM, OK/SW-CL.30; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293S GNTI- KEYWDS SUBSTRATE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHAO,E.Y.JONES REVDAT 4 24-JAN-24 6T2K 1 HETSYN REVDAT 3 29-JUL-20 6T2K 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 15-JAN-20 6T2K 1 JRNL REVDAT 1 01-JAN-20 6T2K 0 JRNL AUTH B.N.ATKINSON,D.STEADMAN,W.MAHY,Y.ZHAO,J.SIPTHORP,E.D.BAYLE, JRNL AUTH 2 F.SVENSSON,G.PAPAGEORGIOU,F.JEGANATHAN,S.FREW,A.MONAGHAN, JRNL AUTH 3 M.BICTASH,E.Y.JONES,P.V.FISH JRNL TITL SCAFFOLD-HOPPING IDENTIFIES FURANO[2,3-D]PYRIMIDINE AMIDES JRNL TITL 2 AS POTENT NOTUM INHIBITORS. JRNL REF BIOORG.MED.CHEM.LETT. V. 30 26751 2020 JRNL REFN ESSN 1464-3405 JRNL PMID 31862412 JRNL DOI 10.1016/J.BMCL.2019.126751 REMARK 2 REMARK 2 RESOLUTION. 1.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_3488 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 69815 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.7380 - 4.0344 1.00 2882 140 0.1922 0.2021 REMARK 3 2 4.0344 - 3.2024 1.00 2736 134 0.1738 0.1997 REMARK 3 3 3.2024 - 2.7977 1.00 2724 122 0.1871 0.2098 REMARK 3 4 2.7977 - 2.5419 1.00 2688 143 0.1850 0.1831 REMARK 3 5 2.5419 - 2.3597 1.00 2690 124 0.1775 0.2136 REMARK 3 6 2.3597 - 2.2206 1.00 2672 128 0.1696 0.2081 REMARK 3 7 2.2206 - 2.1094 1.00 2677 136 0.1660 0.2106 REMARK 3 8 2.1094 - 2.0176 1.00 2647 163 0.1700 0.1891 REMARK 3 9 2.0176 - 1.9399 1.00 2628 145 0.1722 0.2009 REMARK 3 10 1.9399 - 1.8730 1.00 2644 119 0.1734 0.2148 REMARK 3 11 1.8730 - 1.8144 1.00 2663 127 0.1770 0.2505 REMARK 3 12 1.8144 - 1.7625 1.00 2622 141 0.1837 0.2290 REMARK 3 13 1.7625 - 1.7161 1.00 2635 146 0.1815 0.2575 REMARK 3 14 1.7161 - 1.6743 1.00 2633 142 0.1955 0.2414 REMARK 3 15 1.6743 - 1.6362 1.00 2638 136 0.2020 0.2212 REMARK 3 16 1.6362 - 1.6014 1.00 2628 144 0.2018 0.2792 REMARK 3 17 1.6014 - 1.5693 1.00 2623 148 0.2121 0.2640 REMARK 3 18 1.5693 - 1.5397 1.00 2598 164 0.2169 0.2358 REMARK 3 19 1.5397 - 1.5122 1.00 2612 138 0.2238 0.2446 REMARK 3 20 1.5122 - 1.4866 1.00 2601 150 0.2398 0.2451 REMARK 3 21 1.4866 - 1.4626 1.00 2661 118 0.2583 0.3227 REMARK 3 22 1.4626 - 1.4401 1.00 2596 135 0.2690 0.3008 REMARK 3 23 1.4401 - 1.4189 1.00 2603 137 0.2884 0.3087 REMARK 3 24 1.4189 - 1.3989 1.00 2645 135 0.3040 0.3302 REMARK 3 25 1.3989 - 1.3800 1.00 2611 143 0.3019 0.3211 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 88 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9910 11.0193 2.5731 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.1597 REMARK 3 T33: 0.2011 T12: -0.0082 REMARK 3 T13: -0.0178 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.3667 L22: 1.8275 REMARK 3 L33: 3.0493 L12: -0.0620 REMARK 3 L13: -0.0682 L23: 0.4793 REMARK 3 S TENSOR REMARK 3 S11: -0.0290 S12: -0.0273 S13: 0.1578 REMARK 3 S21: 0.0815 S22: 0.0218 S23: -0.0911 REMARK 3 S31: -0.2498 S32: 0.0824 S33: 0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0818 7.3969 -1.8526 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.0827 REMARK 3 T33: 0.1402 T12: -0.0087 REMARK 3 T13: -0.0299 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.8072 L22: 1.9499 REMARK 3 L33: 3.7464 L12: -0.0592 REMARK 3 L13: -0.8500 L23: 0.5419 REMARK 3 S TENSOR REMARK 3 S11: 0.1131 S12: 0.0029 S13: 0.1881 REMARK 3 S21: 0.0388 S22: -0.0233 S23: -0.0595 REMARK 3 S31: -0.3409 S32: -0.0406 S33: -0.0701 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8719 14.6824 -9.8867 REMARK 3 T TENSOR REMARK 3 T11: 0.2495 T22: 0.1989 REMARK 3 T33: 0.2452 T12: 0.0079 REMARK 3 T13: -0.0321 T23: 0.0697 REMARK 3 L TENSOR REMARK 3 L11: 1.8854 L22: 2.7647 REMARK 3 L33: 8.9876 L12: 0.5799 REMARK 3 L13: -1.2169 L23: -1.4090 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: 0.3121 S13: 0.4053 REMARK 3 S21: -0.0948 S22: 0.0247 S23: -0.1044 REMARK 3 S31: -0.8419 S32: -0.0815 S33: -0.0155 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 225 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4535 -1.0889 -5.2761 REMARK 3 T TENSOR REMARK 3 T11: 0.1187 T22: 0.1296 REMARK 3 T33: 0.1304 T12: -0.0033 REMARK 3 T13: 0.0081 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 1.9281 L22: 4.8009 REMARK 3 L33: 3.0954 L12: -0.7276 REMARK 3 L13: 0.7513 L23: -2.6870 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: 0.0174 S13: 0.0500 REMARK 3 S21: 0.0672 S22: 0.0306 S23: 0.2234 REMARK 3 S31: -0.1468 S32: -0.0820 S33: -0.1001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 320 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4369 -2.1562 4.6528 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.2365 REMARK 3 T33: 0.2373 T12: -0.0058 REMARK 3 T13: 0.0426 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 4.0570 L22: 5.2447 REMARK 3 L33: 4.7352 L12: 3.1220 REMARK 3 L13: 0.6474 L23: 4.0198 REMARK 3 S TENSOR REMARK 3 S11: 0.1445 S12: -0.4741 S13: 0.1343 REMARK 3 S21: 0.3320 S22: -0.3645 S23: 0.4305 REMARK 3 S31: -0.0028 S32: -0.3033 S33: 0.2070 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8774 -11.6978 -0.3064 REMARK 3 T TENSOR REMARK 3 T11: 0.1395 T22: 0.1332 REMARK 3 T33: 0.1433 T12: -0.0149 REMARK 3 T13: 0.0068 T23: -0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.0338 L22: 2.4651 REMARK 3 L33: 2.7589 L12: -0.4833 REMARK 3 L13: -0.0672 L23: -1.5622 REMARK 3 S TENSOR REMARK 3 S11: -0.0581 S12: -0.1733 S13: -0.1666 REMARK 3 S21: 0.1786 S22: 0.0205 S23: -0.0249 REMARK 3 S31: -0.0478 S32: 0.0427 S33: 0.0383 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 358 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6029 -23.1658 1.9817 REMARK 3 T TENSOR REMARK 3 T11: 0.1822 T22: 0.1930 REMARK 3 T33: 0.2505 T12: 0.0048 REMARK 3 T13: 0.0354 T23: 0.0423 REMARK 3 L TENSOR REMARK 3 L11: 4.8055 L22: 4.7583 REMARK 3 L33: 8.8562 L12: -4.2801 REMARK 3 L13: 5.1625 L23: -5.9933 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.2850 S13: -0.3989 REMARK 3 S21: -0.2075 S22: 0.0343 S23: 0.0360 REMARK 3 S31: 0.4790 S32: -0.0620 S33: -0.0686 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8675 -11.2370 -8.0086 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.1874 REMARK 3 T33: 0.2044 T12: 0.0002 REMARK 3 T13: 0.0133 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.3227 L22: 2.0107 REMARK 3 L33: 1.8168 L12: -0.4698 REMARK 3 L13: -0.7335 L23: -1.5341 REMARK 3 S TENSOR REMARK 3 S11: -0.0295 S12: 0.0003 S13: 0.0082 REMARK 3 S21: 0.0137 S22: -0.0721 S23: -0.1995 REMARK 3 S31: 0.0564 S32: 0.1793 S33: 0.1502 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 407 THROUGH 451 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6929 -13.8218 -14.3547 REMARK 3 T TENSOR REMARK 3 T11: 0.1741 T22: 0.1759 REMARK 3 T33: 0.1890 T12: -0.0108 REMARK 3 T13: 0.0234 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.5459 L22: 3.1051 REMARK 3 L33: 2.2263 L12: -0.3992 REMARK 3 L13: 0.0225 L23: -1.5183 REMARK 3 S TENSOR REMARK 3 S11: 0.0664 S12: 0.1589 S13: -0.1170 REMARK 3 S21: -0.2777 S22: -0.0483 S23: -0.0412 REMARK 3 S31: 0.1967 S32: 0.0921 S33: 0.0494 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9726 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69891 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.380 REMARK 200 RESOLUTION RANGE LOW (A) : 47.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6R8P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE 0.1 M SODIUM REMARK 280 CITRATE PH4.2, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.81000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.04500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.04500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.81000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 78 REMARK 465 THR A 79 REMARK 465 GLY A 80 REMARK 465 SER A 81 REMARK 465 ALA A 82 REMARK 465 GLN A 83 REMARK 465 GLN A 84 REMARK 465 LEU A 85 REMARK 465 ASN A 86 REMARK 465 GLU A 87 REMARK 465 THR A 277 REMARK 465 ASP A 278 REMARK 465 CYS A 279 REMARK 465 VAL A 280 REMARK 465 ASP A 281 REMARK 465 THR A 282 REMARK 465 ILE A 283 REMARK 465 THR A 284 REMARK 465 CYS A 285 REMARK 465 LEU A 351 REMARK 465 THR A 352 REMARK 465 GLY A 353 REMARK 465 GLN A 354 REMARK 465 PRO A 355 REMARK 465 ASP A 420 REMARK 465 SER A 421 REMARK 465 HIS A 422 REMARK 465 LYS A 423 REMARK 465 ALA A 424 REMARK 465 SER A 425 REMARK 465 LYS A 426 REMARK 465 GLY A 452 REMARK 465 THR A 453 REMARK 465 LYS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 272 O HOH A 601 1.88 REMARK 500 OD1 ASP A 264 O HOH A 602 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 376 O HOH A 733 3544 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 196 CB GLU A 196 CG -0.124 REMARK 500 LYS A 430 CB LYS A 430 CG -0.226 REMARK 500 LYS A 430 CG LYS A 430 CD -0.277 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 416 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 LYS A 430 CG - CD - CE ANGL. DEV. = -22.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 128 -145.76 59.75 REMARK 500 MET A 143 46.85 -140.33 REMARK 500 SER A 232 -123.00 62.93 REMARK 500 SER A 232 -123.79 64.07 REMARK 500 GLN A 311 -176.25 65.12 REMARK 500 HIS A 389 -83.48 -118.72 REMARK 500 ILE A 391 -44.79 -133.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 391 ILE A 392 -143.59 REMARK 500 REMARK 500 REMARK: NULL DBREF 6T2K A 81 451 UNP Q6P988 NOTUM_HUMAN 81 451 SEQADV 6T2K GLU A 78 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K THR A 79 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K GLY A 80 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K SER A 330 UNP Q6P988 CYS 330 ENGINEERED MUTATION SEQADV 6T2K GLY A 452 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K THR A 453 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K LYS A 454 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K HIS A 455 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K HIS A 456 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K HIS A 457 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K HIS A 458 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K HIS A 459 UNP Q6P988 EXPRESSION TAG SEQADV 6T2K HIS A 460 UNP Q6P988 EXPRESSION TAG SEQRES 1 A 383 GLU THR GLY SER ALA GLN GLN LEU ASN GLU ASP LEU ARG SEQRES 2 A 383 LEU HIS LEU LEU LEU ASN THR SER VAL THR CYS ASN ASP SEQRES 3 A 383 GLY SER PRO ALA GLY TYR TYR LEU LYS GLU SER ARG GLY SEQRES 4 A 383 SER ARG ARG TRP LEU LEU PHE LEU GLU GLY GLY TRP TYR SEQRES 5 A 383 CYS PHE ASN ARG GLU ASN CYS ASP SER ARG TYR ASP THR SEQRES 6 A 383 MET ARG ARG LEU MET SER SER ARG ASP TRP PRO ARG THR SEQRES 7 A 383 ARG THR GLY THR GLY ILE LEU SER SER GLN PRO GLU GLU SEQRES 8 A 383 ASN PRO TYR TRP TRP ASN ALA ASN MET VAL PHE ILE PRO SEQRES 9 A 383 TYR CYS SER SER ASP VAL TRP SER GLY ALA SER SER LYS SEQRES 10 A 383 SER GLU LYS ASN GLU TYR ALA PHE MET GLY ALA LEU ILE SEQRES 11 A 383 ILE GLN GLU VAL VAL ARG GLU LEU LEU GLY ARG GLY LEU SEQRES 12 A 383 SER GLY ALA LYS VAL LEU LEU LEU ALA GLY SER SER ALA SEQRES 13 A 383 GLY GLY THR GLY VAL LEU LEU ASN VAL ASP ARG VAL ALA SEQRES 14 A 383 GLU GLN LEU GLU LYS LEU GLY TYR PRO ALA ILE GLN VAL SEQRES 15 A 383 ARG GLY LEU ALA ASP SER GLY TRP PHE LEU ASP ASN LYS SEQRES 16 A 383 GLN TYR ARG HIS THR ASP CYS VAL ASP THR ILE THR CYS SEQRES 17 A 383 ALA PRO THR GLU ALA ILE ARG ARG GLY ILE ARG TYR TRP SEQRES 18 A 383 ASN GLY VAL VAL PRO GLU ARG CYS ARG ARG GLN PHE GLN SEQRES 19 A 383 GLU GLY GLU GLU TRP ASN CYS PHE PHE GLY TYR LYS VAL SEQRES 20 A 383 TYR PRO THR LEU ARG SER PRO VAL PHE VAL VAL GLN TRP SEQRES 21 A 383 LEU PHE ASP GLU ALA GLN LEU THR VAL ASP ASN VAL HIS SEQRES 22 A 383 LEU THR GLY GLN PRO VAL GLN GLU GLY LEU ARG LEU TYR SEQRES 23 A 383 ILE GLN ASN LEU GLY ARG GLU LEU ARG HIS THR LEU LYS SEQRES 24 A 383 ASP VAL PRO ALA SER PHE ALA PRO ALA CYS LEU SER HIS SEQRES 25 A 383 GLU ILE ILE ILE ARG SER HIS TRP THR ASP VAL GLN VAL SEQRES 26 A 383 LYS GLY THR SER LEU PRO ARG ALA LEU HIS CYS TRP ASP SEQRES 27 A 383 ARG SER LEU HIS ASP SER HIS LYS ALA SER LYS THR PRO SEQRES 28 A 383 LEU LYS GLY CYS PRO VAL HIS LEU VAL ASP SER CYS PRO SEQRES 29 A 383 TRP PRO HIS CYS ASN PRO SER CYS PRO THR GLY THR LYS SEQRES 30 A 383 HIS HIS HIS HIS HIS HIS HET SO4 A 501 5 HET NAG A 502 14 HET M9K A 503 18 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HETNAM SO4 SULFATE ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM M9K 2-(6-CHLORANYL-7-CYCLOPROPYL-THIENO[3,2-D]PYRIMIDIN-4- HETNAM 2 M9K YL)SULFANYLETHANOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 SO4 5(O4 S 2-) FORMUL 3 NAG C8 H15 N O6 FORMUL 4 M9K C11 H9 CL N2 O2 S2 FORMUL 9 EDO 4(C2 H6 O2) FORMUL 13 HOH *146(H2 O) HELIX 1 AA1 ASN A 132 MET A 143 1 12 HELIX 2 AA2 ARG A 144 MET A 147 5 4 HELIX 3 AA3 THR A 159 SER A 163 5 5 HELIX 4 AA4 MET A 203 GLY A 217 1 15 HELIX 5 AA5 ARG A 218 ALA A 223 5 6 HELIX 6 AA6 SER A 232 GLY A 253 1 22 HELIX 7 AA7 PRO A 287 ASN A 299 1 13 HELIX 8 AA8 PRO A 303 GLN A 311 1 9 HELIX 9 AA9 GLU A 314 PHE A 319 5 6 HELIX 10 AB1 PHE A 320 TYR A 325 1 6 HELIX 11 AB2 PRO A 326 LEU A 328 5 3 HELIX 12 AB3 GLU A 341 ASP A 347 1 7 HELIX 13 AB4 GLN A 357 LEU A 375 1 19 HELIX 14 AB5 LEU A 407 LEU A 418 1 12 SHEET 1 AA110 THR A 155 ARG A 156 0 SHEET 2 AA110 LEU A 89 LEU A 93 -1 N LEU A 89 O ARG A 156 SHEET 3 AA110 GLY A 108 LYS A 112 -1 O TYR A 109 N HIS A 92 SHEET 4 AA110 ASN A 176 ILE A 180 -1 O PHE A 179 N TYR A 110 SHEET 5 AA110 ARG A 119 LEU A 124 1 N PHE A 123 O ILE A 180 SHEET 6 AA110 VAL A 225 SER A 231 1 O ALA A 229 N LEU A 124 SHEET 7 AA110 GLN A 258 ASP A 264 1 O ARG A 260 N LEU A 228 SHEET 8 AA110 VAL A 332 VAL A 335 1 O VAL A 335 N ALA A 263 SHEET 9 AA110 SER A 381 ALA A 383 1 O PHE A 382 N VAL A 334 SHEET 10 AA110 HIS A 435 VAL A 437 1 O LEU A 436 N SER A 381 SHEET 1 AA2 2 PHE A 339 ASP A 340 0 SHEET 2 AA2 2 LEU A 387 SER A 388 1 O SER A 388 N PHE A 339 SHEET 1 AA3 2 GLN A 401 VAL A 402 0 SHEET 2 AA3 2 THR A 405 SER A 406 -1 O THR A 405 N VAL A 402 SSBOND 1 CYS A 101 CYS A 183 1555 1555 2.09 SSBOND 2 CYS A 130 CYS A 136 1555 1555 2.02 SSBOND 3 CYS A 306 CYS A 318 1555 1555 2.13 SSBOND 4 CYS A 386 CYS A 449 1555 1555 2.04 SSBOND 5 CYS A 413 CYS A 432 1555 1555 1.98 SSBOND 6 CYS A 440 CYS A 445 1555 1555 2.02 LINK ND2 ASN A 96 C1 NAG A 502 1555 1555 1.42 CRYST1 59.620 72.130 78.090 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013864 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012806 0.00000