HEADER TRANSFERASE 11-OCT-19 6T3V TITLE PSYCHROPHILIC AROMATIC AMINO ACIDS AMINOTRANSFERASE FROM PSYCHROBACTER TITLE 2 SP. B6 COCRYSTALIZED WITH SUBSTRATE ANALOG - MALIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSYCHROBACTER SP. B6; SOURCE 3 ORGANISM_TAXID: 408968; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PSYCHROPHILIC, AMINOTRANASFERASE, COLD-ADAPTED, ENZYME, COMPLEX, KEYWDS 2 MALIC ACID, INHIBITOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.RUTKIEWICZ,A.BUJACZ,J.RUM,G.BUJACZ REVDAT 3 24-JAN-24 6T3V 1 REMARK REVDAT 2 01-DEC-21 6T3V 1 JRNL REVDAT 1 18-NOV-20 6T3V 0 JRNL AUTH A.BUJACZ,J.RUM,M.RUTKIEWICZ,A.J.PIETRZYK-BRZEZINSKA,G.BUJACZ JRNL TITL STRUCTURAL EVIDENCE OF ACTIVE SITE ADAPTABILITY TOWARDS JRNL TITL 2 DIFFERENT SIZED SUBSTRATES OF AROMATIC AMINO ACID JRNL TITL 3 AMINOTRANSFERASE FROM PSYCHROBACTER SP. B6. JRNL REF MATERIALS V. 14 2021 JRNL REFN ESSN 1996-1944 JRNL PMID 34204354 JRNL DOI 10.3390/MA14123351 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.BUJACZ,M.RUTKIEWICZ-KROTEWICZ,K.NOWAKOWSKA-SAPOTA, REMARK 1 AUTH 2 M.TURKIEWICZ REMARK 1 TITL CRYSTAL STRUCTURE AND ENZYMATIC PROPERTIES OF A BROAD REMARK 1 TITL 2 SUBSTRATE-SPECIFICITY PSYCHROPHILIC AMINOTRANSFERASE FROM REMARK 1 TITL 3 THE ANTARCTIC SOIL BACTERIUM PSYCHROBACTER SP. B6. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 71 632 2015 REMARK 1 REFN ESSN 1399-0047 REMARK 1 PMID 25760611 REMARK 1 DOI 10.1107/S1399004714028016 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 69085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3674 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3911 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.1240 REMARK 3 BIN FREE R VALUE SET COUNT : 231 REMARK 3 BIN FREE R VALUE : 0.1720 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3101 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.46000 REMARK 3 B12 (A**2) : 0.07000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.067 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3334 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4554 ; 1.631 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 443 ; 5.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;35.463 ;24.581 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;12.883 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.209 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 497 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2580 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3333 ; 3.817 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 96 ;23.041 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3653 ;12.527 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): 37.1877 42.7547 27.9031 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0701 REMARK 3 T33: 0.0465 T12: -0.0160 REMARK 3 T13: -0.0583 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.2971 L22: 0.0228 REMARK 3 L33: 0.4230 L12: 0.0561 REMARK 3 L13: -0.2961 L23: -0.0953 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.0203 S13: -0.0102 REMARK 3 S21: 0.0148 S22: -0.0357 S23: -0.0168 REMARK 3 S31: -0.0481 S32: 0.1029 S33: 0.0584 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 287 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1675 35.2731 36.3386 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0534 REMARK 3 T33: 0.0300 T12: 0.0191 REMARK 3 T13: 0.0289 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.1084 L22: 0.3342 REMARK 3 L33: 0.3751 L12: -0.1616 REMARK 3 L13: 0.0434 L23: -0.0396 REMARK 3 S TENSOR REMARK 3 S11: -0.0740 S12: -0.0094 S13: -0.0375 REMARK 3 S21: 0.1040 S22: 0.0638 S23: 0.0478 REMARK 3 S31: -0.0191 S32: -0.0427 S33: 0.0102 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 288 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6578 44.9149 45.4997 REMARK 3 T TENSOR REMARK 3 T11: 0.1162 T22: 0.0311 REMARK 3 T33: 0.0480 T12: 0.0364 REMARK 3 T13: -0.0430 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.2469 L22: 0.5435 REMARK 3 L33: 0.4653 L12: 0.0788 REMARK 3 L13: 0.0899 L23: 0.2095 REMARK 3 S TENSOR REMARK 3 S11: -0.1097 S12: -0.0430 S13: -0.0007 REMARK 3 S21: 0.0823 S22: 0.0105 S23: -0.0363 REMARK 3 S31: -0.0498 S32: 0.0545 S33: 0.0992 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.0244 REMARK 3 T33: 0.0244 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.0244 REMARK 3 T33: 0.0244 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0244 T22: 0.0244 REMARK 3 T33: 0.0244 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6T3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72901 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 13.60 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.1 M DL-MALIC ACID PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 161.16667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.58333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 120.87500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.29167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 201.45833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 161.16667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 80.58333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.29167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 120.87500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 201.45833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 45.10450 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 78.12329 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.29167 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 149 -67.75 -133.99 REMARK 500 GLU A 219 -62.36 -106.57 REMARK 500 GLU A 219 -63.36 -106.12 REMARK 500 TYR A 283 7.78 -150.86 REMARK 500 SER A 284 -58.83 76.35 REMARK 500 SER A 284 -58.19 75.32 REMARK 500 SER A 373 0.76 86.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1009 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH A1010 DISTANCE = 6.68 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PLP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LMR A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4RKC RELATED DB: PDB REMARK 900 NATIVE STRUCTURE REMARK 900 RELATED ID: 4RKD RELATED DB: PDB REMARK 900 COMPLEX WITH ASPARTIC ACID DBREF 6T3V A 1 398 UNP C7E5X4 C7E5X4_9GAMM 1 398 SEQRES 1 A 398 MET PHE GLU ARG ILE ASP TYR TYR ALA GLY ASP PRO ILE SEQRES 2 A 398 LEU GLY LEU VAL GLU LYS PHE ALA ALA ASP ASN ASN PRO SEQRES 3 A 398 ASP LYS VAL ASN LEU GLY ILE GLY ILE TYR TYR ASP GLU SEQRES 4 A 398 SER GLY VAL MET PRO VAL LEU ASP CYS VAL LYS ILE ALA SEQRES 5 A 398 GLU GLN ARG ILE ALA ASP PRO ILE SER PRO ARG PRO TYR SEQRES 6 A 398 LEU PRO MET ALA GLY LEU PRO GLY HIS ARG LYS GLY CYS SEQRES 7 A 398 GLN GLU LEU LEU PHE GLY LYS ASP ALA PRO VAL LEU LYS SEQRES 8 A 398 ASP GLY LEU VAL ALA THR ILE ALA THR ILE GLY GLY SER SEQRES 9 A 398 GLY ALA LEU LYS VAL GLY ALA GLU PHE ILE HIS GLU TRP SEQRES 10 A 398 PHE PRO GLN SER LYS CYS TYR VAL SER ASP PRO THR TRP SEQRES 11 A 398 GLY ASN HIS ILE ALA ILE PHE GLU GLY CYS ASP ILE GLU SEQRES 12 A 398 VAL GLY LYS TYR PRO TYR TYR ASP THR ALA THR GLY GLY SEQRES 13 A 398 ILE LYS PHE ASP GLU MET ILE ALA PHE PHE GLU THR LEU SEQRES 14 A 398 ASN LYS ASP ASP VAL LEU LEU LEU HIS PRO CYS CYS HIS SEQRES 15 A 398 ASN PRO THR GLY VAL ASP LEU THR ARG GLU GLN TRP ASP SEQRES 16 A 398 THR VAL LEU ASN VAL ILE GLN GLU ARG GLU LEU ILE PRO SEQRES 17 A 398 PHE MET ASP ILE ALA TYR GLN GLY PHE GLY GLU ASP MET SEQRES 18 A 398 ASP SER ASP ALA TYR ALA ILE ARG LYS ALA VAL ASP MET SEQRES 19 A 398 GLY LEU PRO LEU PHE VAL SER ASN SER PHE SER LYS ASN SEQRES 20 A 398 LEU SER LEU TYR GLY GLU ARG VAL GLY GLY LEU SER VAL SEQRES 21 A 398 VAL CYS PRO THR VAL ASP GLU THR GLU ARG VAL PHE GLY SEQRES 22 A 398 GLN LEU ASN SER THR VAL ARG ARG ILE TYR SER SER PRO SEQRES 23 A 398 PRO SER HIS GLY GLY ARG VAL VAL ASP ILE VAL MET ASN SEQRES 24 A 398 ASP ALA ALA LEU HIS GLU GLN TRP VAL GLY GLU VAL TYR SEQRES 25 A 398 ALA MET ARG ASP ARG ILE LYS SER MET ARG THR LYS LEU SEQRES 26 A 398 LYS SER VAL LEU GLU ALA LYS ILE SER GLY ARG ASN PHE SEQRES 27 A 398 ASP TYR LEU THR ALA GLN ASN GLY MET PHE SER PHE THR SEQRES 28 A 398 GLY LEU THR PRO GLU GLN VAL GLU ARG LEU GLN SER GLU SEQRES 29 A 398 PHE GLY ILE TYR MET ILE SER ASN SER ARG MET CYS VAL SEQRES 30 A 398 ALA GLY LEU ASN SER SER ASN ILE ASP TYR VAL ALA ASN SEQRES 31 A 398 ALA MET VAL ASP VAL LEU LYS ASP HET PLP A 401 15 HET LMR A 402 9 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM LMR (2S)-2-HYDROXYBUTANEDIOIC ACID HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN LMR L-MALATE FORMUL 2 PLP C8 H10 N O6 P FORMUL 3 LMR C4 H6 O5 FORMUL 4 HOH *510(H2 O) HELIX 1 AA1 LEU A 14 ASP A 23 1 10 HELIX 2 AA2 LEU A 46 ALA A 57 1 12 HELIX 3 AA3 LEU A 71 GLY A 84 1 14 HELIX 4 AA4 ALA A 87 ASP A 92 1 6 HELIX 5 AA5 GLY A 102 PHE A 118 1 17 HELIX 6 AA6 TRP A 130 GLY A 139 1 10 HELIX 7 AA7 LYS A 158 GLU A 167 1 10 HELIX 8 AA8 THR A 190 GLU A 205 1 16 HELIX 9 AA9 ASP A 220 ALA A 225 1 6 HELIX 10 AB1 ALA A 225 MET A 234 1 10 HELIX 11 AB2 LEU A 250 GLU A 253 5 4 HELIX 12 AB3 THR A 264 ARG A 281 1 18 HELIX 13 AB4 PRO A 287 ASP A 300 1 14 HELIX 14 AB5 ASP A 300 ILE A 333 1 34 HELIX 15 AB6 ASP A 339 GLN A 344 1 6 HELIX 16 AB7 THR A 354 GLY A 366 1 13 HELIX 17 AB8 ALA A 378 LEU A 380 5 3 HELIX 18 AB9 ASN A 384 LYS A 397 1 14 SHEET 1 AA1 2 VAL A 29 ASN A 30 0 SHEET 2 AA1 2 ILE A 367 TYR A 368 1 O TYR A 368 N VAL A 29 SHEET 1 AA2 7 VAL A 95 ILE A 101 0 SHEET 2 AA2 7 VAL A 255 VAL A 261 -1 O VAL A 260 N ALA A 96 SHEET 3 AA2 7 PHE A 239 SER A 243 -1 N VAL A 240 O SER A 259 SHEET 4 AA2 7 ILE A 207 ILE A 212 1 N ILE A 212 O SER A 241 SHEET 5 AA2 7 VAL A 174 LEU A 177 1 N LEU A 175 O PHE A 209 SHEET 6 AA2 7 CYS A 123 ASP A 127 1 N TYR A 124 O LEU A 176 SHEET 7 AA2 7 VAL A 144 PRO A 148 1 O GLY A 145 N VAL A 125 SHEET 1 AA3 2 PHE A 348 PHE A 350 0 SHEET 2 AA3 2 ARG A 374 CYS A 376 -1 O MET A 375 N SER A 349 LINK NZ LYS A 246 C4A PLP A 401 1555 1555 1.29 CISPEP 1 ASP A 58 PRO A 59 0 7.19 CISPEP 2 ASP A 127 PRO A 128 0 -3.58 CISPEP 3 ASN A 183 PRO A 184 0 23.35 SITE 1 AC1 14 TYR A 65 GLY A 102 GLY A 103 SER A 104 SITE 2 AC1 14 TRP A 130 ASN A 183 ASP A 211 ALA A 213 SITE 3 AC1 14 TYR A 214 SER A 243 SER A 245 LYS A 246 SITE 4 AC1 14 ARG A 254 LMR A 402 SITE 1 AC2 12 ILE A 13 ILE A 33 GLY A 34 TRP A 130 SITE 2 AC2 12 ASN A 183 TYR A 214 LYS A 246 ARG A 280 SITE 3 AC2 12 ARG A 374 PLP A 401 HOH A 534 HOH A 656 CRYST1 90.209 90.209 241.750 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011085 0.006400 0.000000 0.00000 SCALE2 0.000000 0.012800 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004137 0.00000