HEADER IMMUNE SYSTEM 11-OCT-19 6T3Y TITLE IMPROVED HIGH RESOLUTION STRUCTURE OF MHC CLASS II COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS II ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MHC CLASS II ANTIGEN ALPHA CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MHC CLASS II BETA CHAIN 2; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: B-LA; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 10 ORGANISM_COMMON: CHICKEN; SOURCE 11 ORGANISM_TAXID: 9031; SOURCE 12 GENE: BLB2; SOURCE 13 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS MHC II, IMMUNE SYNAPSE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.HALABI,M.C.MONCRIEFFE,J.KAUFMAN REVDAT 3 24-JAN-24 6T3Y 1 REMARK REVDAT 2 09-JUN-21 6T3Y 1 JRNL REVDAT 1 25-NOV-20 6T3Y 0 JRNL AUTH S.HALABI,M.GHOSH,S.STEVANOVIC,H.G.RAMMENSEE,L.D.BERTZBACH, JRNL AUTH 2 B.B.KAUFER,M.C.MONCRIEFFE,B.KASPERS,S.HARTLE,J.KAUFMAN JRNL TITL THE DOMINANTLY EXPRESSED CLASS II MOLECULE FROM A RESISTANT JRNL TITL 2 MHC HAPLOTYPE PRESENTS ONLY A FEW MAREK'S DISEASE VIRUS JRNL TITL 3 PEPTIDES BY USING AN UNPRECEDENTED BINDING MOTIF. JRNL REF PLOS BIOL. V. 19 01057 2021 JRNL REFN ESSN 1545-7885 JRNL PMID 33901176 JRNL DOI 10.1371/JOURNAL.PBIO.3001057 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17RC4_3626 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 49389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8500 - 5.2600 1.00 1537 181 0.1937 0.2448 REMARK 3 2 5.2600 - 4.1800 1.00 1495 193 0.1413 0.1551 REMARK 3 3 4.1800 - 3.6500 1.00 1512 164 0.1438 0.1624 REMARK 3 4 3.6500 - 3.3200 1.00 1464 182 0.1499 0.1647 REMARK 3 5 3.3200 - 3.0800 1.00 1517 157 0.1665 0.1814 REMARK 3 6 3.0800 - 2.9000 1.00 1500 150 0.1721 0.2222 REMARK 3 7 2.9000 - 2.7500 1.00 1489 161 0.1720 0.1912 REMARK 3 8 2.7500 - 2.6300 1.00 1505 165 0.1681 0.2107 REMARK 3 9 2.6300 - 2.5300 1.00 1504 146 0.1742 0.2040 REMARK 3 10 2.5300 - 2.4500 1.00 1503 148 0.1671 0.2188 REMARK 3 11 2.4500 - 2.3700 1.00 1485 163 0.1777 0.2273 REMARK 3 12 2.3700 - 2.3000 1.00 1491 169 0.1674 0.2324 REMARK 3 13 2.3000 - 2.2400 1.00 1462 163 0.1658 0.2140 REMARK 3 14 2.2400 - 2.1900 1.00 1515 139 0.1601 0.1925 REMARK 3 15 2.1900 - 2.1400 1.00 1463 167 0.1577 0.1943 REMARK 3 16 2.1400 - 2.0900 1.00 1491 184 0.1622 0.1976 REMARK 3 17 2.0900 - 2.0500 1.00 1469 184 0.1625 0.2204 REMARK 3 18 2.0500 - 2.0100 1.00 1464 166 0.1712 0.1970 REMARK 3 19 2.0100 - 1.9800 1.00 1421 201 0.1720 0.1746 REMARK 3 20 1.9800 - 1.9400 0.99 1458 180 0.1861 0.2443 REMARK 3 21 1.9400 - 1.9100 1.00 1476 177 0.1879 0.2327 REMARK 3 22 1.9100 - 1.8800 1.00 1456 164 0.2037 0.2379 REMARK 3 23 1.8800 - 1.8500 1.00 1454 173 0.2078 0.2379 REMARK 3 24 1.8500 - 1.8300 1.00 1530 150 0.2264 0.2645 REMARK 3 25 1.8300 - 1.8000 1.00 1438 180 0.2207 0.2628 REMARK 3 26 1.8000 - 1.7800 1.00 1508 157 0.2411 0.2354 REMARK 3 27 1.7800 - 1.7600 1.00 1473 152 0.2442 0.2743 REMARK 3 28 1.7600 - 1.7400 0.99 1485 150 0.2635 0.2990 REMARK 3 29 1.7400 - 1.7200 1.00 1443 166 0.2747 0.3140 REMARK 3 30 1.7200 - 1.7000 0.92 1391 158 0.3083 0.3535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.167 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.767 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3129 REMARK 3 ANGLE : 1.122 4253 REMARK 3 CHIRALITY : 0.076 444 REMARK 3 PLANARITY : 0.009 560 REMARK 3 DIHEDRAL : 6.689 420 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4088 12.5203 -10.6063 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.2727 REMARK 3 T33: 0.1635 T12: -0.0166 REMARK 3 T13: -0.0030 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 1.1739 L22: 3.2222 REMARK 3 L33: 0.7602 L12: -0.4138 REMARK 3 L13: -0.3095 L23: -0.0806 REMARK 3 S TENSOR REMARK 3 S11: -0.0469 S12: 0.0145 S13: 0.1043 REMARK 3 S21: -0.0223 S22: 0.0678 S23: 0.0515 REMARK 3 S31: -0.0266 S32: -0.0758 S33: -0.0830 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2673 2.8019 -13.4397 REMARK 3 T TENSOR REMARK 3 T11: 0.1590 T22: 0.2975 REMARK 3 T33: 0.1658 T12: -0.0106 REMARK 3 T13: 0.0076 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 2.0169 L22: 0.9186 REMARK 3 L33: 1.8785 L12: -0.8150 REMARK 3 L13: 0.5367 L23: 0.3806 REMARK 3 S TENSOR REMARK 3 S11: 0.0648 S12: 0.2306 S13: 0.0481 REMARK 3 S21: -0.1331 S22: -0.0286 S23: -0.0355 REMARK 3 S31: -0.0190 S32: 0.4130 S33: -0.0258 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7815 15.4183 -19.7718 REMARK 3 T TENSOR REMARK 3 T11: 0.2071 T22: 0.3908 REMARK 3 T33: 0.2169 T12: 0.0010 REMARK 3 T13: -0.0202 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.5927 L22: 1.9889 REMARK 3 L33: 0.8496 L12: -1.6230 REMARK 3 L13: -0.9336 L23: 1.1428 REMARK 3 S TENSOR REMARK 3 S11: 0.0111 S12: 0.0628 S13: 0.0607 REMARK 3 S21: -0.0972 S22: 0.0660 S23: 0.0096 REMARK 3 S31: -0.1138 S32: 0.0086 S33: -0.0227 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.8006 17.7690 2.3200 REMARK 3 T TENSOR REMARK 3 T11: 0.2256 T22: 0.3125 REMARK 3 T33: 0.2143 T12: -0.0203 REMARK 3 T13: -0.0250 T23: -0.0670 REMARK 3 L TENSOR REMARK 3 L11: 2.6479 L22: 2.0214 REMARK 3 L33: 1.6719 L12: 0.0255 REMARK 3 L13: 0.5318 L23: -0.6763 REMARK 3 S TENSOR REMARK 3 S11: -0.1147 S12: -0.3830 S13: -0.0028 REMARK 3 S21: 0.1823 S22: 0.1472 S23: 0.0602 REMARK 3 S31: -0.1773 S32: -0.1441 S33: -0.0624 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 107 THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2696 16.6878 -1.0341 REMARK 3 T TENSOR REMARK 3 T11: 0.1893 T22: 0.3293 REMARK 3 T33: 0.2356 T12: -0.0242 REMARK 3 T13: -0.0098 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.9305 L22: 0.5720 REMARK 3 L33: 0.7581 L12: 0.6373 REMARK 3 L13: 0.6103 L23: 0.1781 REMARK 3 S TENSOR REMARK 3 S11: -0.1079 S12: 0.0751 S13: 0.0221 REMARK 3 S21: 0.0413 S22: 0.0962 S23: -0.1262 REMARK 3 S31: -0.0979 S32: 0.1187 S33: 0.0146 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3172 17.3047 3.3565 REMARK 3 T TENSOR REMARK 3 T11: 0.1994 T22: 0.3511 REMARK 3 T33: 0.2588 T12: -0.0444 REMARK 3 T13: -0.0277 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 2.5707 L22: 1.0140 REMARK 3 L33: 1.0749 L12: 0.6369 REMARK 3 L13: 0.7230 L23: 0.5017 REMARK 3 S TENSOR REMARK 3 S11: -0.0138 S12: -0.1882 S13: 0.0229 REMARK 3 S21: 0.0990 S22: 0.0150 S23: -0.0454 REMARK 3 S31: -0.0871 S32: 0.2440 S33: 0.0329 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 173 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8475 22.9484 6.3041 REMARK 3 T TENSOR REMARK 3 T11: 0.2918 T22: 0.4159 REMARK 3 T33: 0.3501 T12: -0.0173 REMARK 3 T13: -0.0520 T23: -0.0655 REMARK 3 L TENSOR REMARK 3 L11: 3.8601 L22: 1.3794 REMARK 3 L33: 2.0574 L12: -1.1326 REMARK 3 L13: 1.7046 L23: -0.0293 REMARK 3 S TENSOR REMARK 3 S11: -0.7959 S12: -0.8084 S13: 0.8962 REMARK 3 S21: 0.4440 S22: 0.1272 S23: -0.4012 REMARK 3 S31: -0.4780 S32: -0.4682 S33: 0.4672 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.3515 5.5203 -10.5687 REMARK 3 T TENSOR REMARK 3 T11: 0.1677 T22: 0.3024 REMARK 3 T33: 0.1730 T12: -0.0024 REMARK 3 T13: 0.0030 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.4179 L22: 1.4943 REMARK 3 L33: 1.0150 L12: -0.0133 REMARK 3 L13: 0.1103 L23: 0.2529 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.0251 S13: -0.0538 REMARK 3 S21: 0.1380 S22: -0.1040 S23: 0.1553 REMARK 3 S31: 0.0206 S32: -0.1533 S33: 0.0933 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2403 1.5276 -5.9158 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.3393 REMARK 3 T33: 0.2286 T12: -0.0369 REMARK 3 T13: 0.0237 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.1081 L22: 0.6873 REMARK 3 L33: 0.8672 L12: -0.4468 REMARK 3 L13: 0.1831 L23: 0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.0843 S13: -0.0622 REMARK 3 S21: 0.0515 S22: -0.0502 S23: 0.0424 REMARK 3 S31: 0.0918 S32: -0.1227 S33: 0.0533 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 149 THROUGH 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0394 -2.4192 17.8767 REMARK 3 T TENSOR REMARK 3 T11: 0.4276 T22: 0.6472 REMARK 3 T33: 0.2632 T12: 0.0685 REMARK 3 T13: -0.0372 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 0.8139 L22: 1.9533 REMARK 3 L33: 2.6681 L12: 0.3212 REMARK 3 L13: 0.6674 L23: -0.3120 REMARK 3 S TENSOR REMARK 3 S11: -0.0635 S12: -0.6577 S13: -0.1195 REMARK 3 S21: 0.6083 S22: -0.0442 S23: -0.1922 REMARK 3 S31: 0.2293 S32: 0.0424 S33: 0.0647 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104813. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 294236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 26.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4X5W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA ACETATE 0.1 M TRIS 30 %W/V REMARK 280 PEG 4K, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 77.07650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.00100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 77.07650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.00100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 336 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 447 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 1 REMARK 465 ASP B 2 REMARK 465 ARG B 3 REMARK 465 PRO B 4 REMARK 465 GLN B 5 REMARK 465 ALA B 23 REMARK 465 GLY B 24 REMARK 465 GLY B 25 REMARK 465 GLY B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 GLY B 30 REMARK 465 GLY B 31 REMARK 465 GLY B 32 REMARK 465 SER B 33 REMARK 465 GLY B 34 REMARK 465 GLY B 35 REMARK 465 GLY B 36 REMARK 465 GLY B 37 REMARK 465 SER B 38 REMARK 465 SER B 141 REMARK 465 GLY B 142 REMARK 465 SER B 143 REMARK 465 LEU B 144 REMARK 465 PRO B 145 REMARK 465 ARG B 201 REMARK 465 ARG B 202 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 176 CG CD OE1 OE2 REMARK 470 ILE B 6 CG1 CG2 CD1 REMARK 470 GLU B 7 CG CD OE1 OE2 REMARK 470 LYS B 22 CG CD CE NZ REMARK 470 LEU B 139 CG CD1 CD2 REMARK 470 GLN B 140 CG CD OE1 NE2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 176 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 197 CG CD OE1 OE2 REMARK 470 THR B 198 OG1 CG2 REMARK 470 VAL B 199 CG1 CG2 REMARK 470 GLU B 224 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2 GOL A 201 O HOH A 301 1.48 REMARK 500 O ALA B 222 O HOH B 501 1.83 REMARK 500 O HOH B 573 O HOH B 597 1.84 REMARK 500 O HOH A 445 O HOH A 446 1.86 REMARK 500 O2 GOL B 401 O3 GOL B 402 1.93 REMARK 500 O HOH A 384 O HOH A 399 1.98 REMARK 500 O HOH A 305 O HOH A 313 2.00 REMARK 500 OE1 GLU B 94 O HOH B 502 2.00 REMARK 500 O HOH A 350 O HOH A 453 2.05 REMARK 500 O HOH A 349 O HOH A 466 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 9 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 32 -128.46 48.43 REMARK 500 ASN B 68 -112.15 51.41 REMARK 500 THR B 125 -76.83 -127.73 REMARK 500 ASN B 169 12.71 59.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 643 DISTANCE = 6.23 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 DBREF 6T3Y A 6 186 UNP Q4U5Z6 Q4U5Z6_CHICK 27 207 DBREF 6T3Y B 39 224 UNP B5BSA0 B5BSA0_CHICK 30 215 SEQADV 6T3Y ALA A 4 UNP Q4U5Z6 EXPRESSION TAG SEQADV 6T3Y ARG A 5 UNP Q4U5Z6 EXPRESSION TAG SEQADV 6T3Y ALA B 1 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y ASP B 2 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y ARG B 3 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y PRO B 4 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLN B 5 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y ILE B 6 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLU B 7 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y SER B 8 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y LEU B 9 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y SER B 10 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y LEU B 11 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y ASN B 12 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 13 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y VAL B 14 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y PRO B 15 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y ASN B 16 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y ILE B 17 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y PHE B 18 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y LEU B 19 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y SER B 20 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y THR B 21 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y LYS B 22 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y ALA B 23 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 24 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 25 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 26 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 27 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y SER B 28 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 29 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 30 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 31 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 32 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y SER B 33 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 34 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 35 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 36 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y GLY B 37 UNP B5BSA0 EXPRESSION TAG SEQADV 6T3Y SER B 38 UNP B5BSA0 EXPRESSION TAG SEQRES 1 A 183 ALA ARG HIS VAL LEU LEU GLN ALA GLU PHE TYR GLN ARG SEQRES 2 A 183 SER GLU GLY PRO ASP LYS ALA TRP ALA GLN PHE GLY PHE SEQRES 3 A 183 HIS PHE ASP ALA ASP GLU LEU PHE HIS VAL GLU LEU ASP SEQRES 4 A 183 ALA ALA GLN THR VAL TRP ARG LEU PRO GLU PHE GLY ARG SEQRES 5 A 183 PHE ALA SER PHE GLU ALA GLN GLY ALA LEU GLN ASN MET SEQRES 6 A 183 ALA VAL GLY LYS GLN ASN LEU GLU VAL MET ILE SER ASN SEQRES 7 A 183 SER ASN ARG SER GLN GLN ASP PHE VAL THR PRO GLU LEU SEQRES 8 A 183 ALA LEU PHE PRO ALA GLU ALA VAL SER LEU GLU GLU PRO SEQRES 9 A 183 ASN VAL LEU ILE CYS TYR ALA ASP LYS PHE TRP PRO PRO SEQRES 10 A 183 VAL ALA THR MET GLU TRP ARG ARG ASN GLY ALA VAL VAL SEQRES 11 A 183 SER GLU GLY VAL TYR ASP SER VAL TYR TYR GLY ARG PRO SEQRES 12 A 183 ASP LEU LEU PHE ARG LYS PHE SER TYR LEU PRO PHE VAL SEQRES 13 A 183 PRO GLN ARG GLY ASP VAL TYR SER CYS ALA VAL ARG HIS SEQRES 14 A 183 TRP GLY ALA GLU GLY PRO VAL GLN ARG MET TRP GLU PRO SEQRES 15 A 183 GLU SEQRES 1 B 224 ALA ASP ARG PRO GLN ILE GLU SER LEU SER LEU ASN GLY SEQRES 2 B 224 VAL PRO ASN ILE PHE LEU SER THR LYS ALA GLY GLY GLY SEQRES 3 B 224 GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER SER SEQRES 4 B 224 ALA PHE PHE PHE CYS GLY ALA ILE PHE GLU CYS HIS TYR SEQRES 5 B 224 LEU ASN GLY THR GLU ARG VAL ARG TYR LEU GLN ARG TYR SEQRES 6 B 224 ILE TYR ASN ARG GLN GLN LEU VAL HIS PHE ASP SER ASP SEQRES 7 B 224 VAL GLY LYS PHE VAL ALA ASP THR PRO LEU GLY GLU PRO SEQRES 8 B 224 GLN ALA GLU TYR TRP ASN SER ASN ALA GLU LEU LEU GLU SEQRES 9 B 224 ASN ILE MET ASN ILE ALA ASP GLY SER CYS ARG HIS ASN SEQRES 10 B 224 TYR GLY ILE LEU GLU SER PHE THR VAL GLN ARG SER VAL SEQRES 11 B 224 GLU PRO LYS VAL ARG VAL SER ALA LEU GLN SER GLY SER SEQRES 12 B 224 LEU PRO GLU THR ASP ARG LEU ALA CYS TYR VAL THR GLY SEQRES 13 B 224 PHE TYR PRO PRO GLU ILE GLU VAL LYS TRP PHE LEU ASN SEQRES 14 B 224 GLY ARG GLU GLU THR GLU ARG VAL VAL SER THR ASP VAL SEQRES 15 B 224 MET GLN ASN GLY ASP TRP THR TYR GLN VAL LEU VAL VAL SEQRES 16 B 224 LEU GLU THR VAL PRO ARG ARG GLY ASP SER TYR VAL CYS SEQRES 17 B 224 ARG VAL GLU HIS ALA SER LEU ARG GLN PRO ILE SER GLN SEQRES 18 B 224 ALA TRP GLU HET GOL A 201 14 HET ACT A 202 7 HET GOL B 401 14 HET GOL B 402 14 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 4 ACT C2 H3 O2 1- FORMUL 7 HOH *317(H2 O) HELIX 1 AA1 LEU A 50 PHE A 56 1 7 HELIX 2 AA2 ALA A 61 SER A 82 1 22 HELIX 3 AA3 THR B 86 LEU B 88 5 3 HELIX 4 AA4 GLY B 89 SER B 98 1 10 HELIX 5 AA5 ASN B 99 ASN B 108 1 10 HELIX 6 AA6 GLY B 112 GLU B 122 1 11 HELIX 7 AA7 SER B 123 THR B 125 5 3 SHEET 1 AA1 8 GLN A 45 TRP A 48 0 SHEET 2 AA1 8 ASP A 34 GLU A 40 -1 N HIS A 38 O VAL A 47 SHEET 3 AA1 8 LYS A 22 PHE A 31 -1 N PHE A 31 O ASP A 34 SHEET 4 AA1 8 HIS A 6 GLU A 18 -1 N LEU A 9 O HIS A 30 SHEET 5 AA1 8 ALA B 40 LEU B 53 -1 O CYS B 50 N LEU A 8 SHEET 6 AA1 8 ARG B 58 TYR B 67 -1 O ARG B 60 N HIS B 51 SHEET 7 AA1 8 GLN B 70 ASP B 76 -1 O LEU B 72 N TYR B 65 SHEET 8 AA1 8 PHE B 82 ALA B 84 -1 O VAL B 83 N HIS B 74 SHEET 1 AA2 2 ALA A 57 SER A 58 0 SHEET 2 AA2 2 GLU B 7 SER B 8 1 O GLU B 7 N SER A 58 SHEET 1 AA3 4 GLU A 93 PRO A 98 0 SHEET 2 AA3 4 ASN A 108 PHE A 117 -1 O TYR A 113 N ALA A 95 SHEET 3 AA3 4 PHE A 150 PHE A 158 -1 O PHE A 158 N ASN A 108 SHEET 4 AA3 4 TYR A 138 ASP A 139 -1 N TYR A 138 O TYR A 155 SHEET 1 AA4 4 GLU A 93 PRO A 98 0 SHEET 2 AA4 4 ASN A 108 PHE A 117 -1 O TYR A 113 N ALA A 95 SHEET 3 AA4 4 PHE A 150 PHE A 158 -1 O PHE A 158 N ASN A 108 SHEET 4 AA4 4 TYR A 143 GLY A 144 -1 N TYR A 143 O ARG A 151 SHEET 1 AA5 4 ALA A 131 VAL A 133 0 SHEET 2 AA5 4 ALA A 122 ARG A 128 -1 N ARG A 128 O ALA A 131 SHEET 3 AA5 4 TYR A 166 HIS A 172 -1 O ARG A 171 N THR A 123 SHEET 4 AA5 4 VAL A 179 TRP A 183 -1 O TRP A 183 N TYR A 166 SHEET 1 AA6 4 LYS B 133 LEU B 139 0 SHEET 2 AA6 4 ARG B 149 PHE B 157 -1 O ARG B 149 N LEU B 139 SHEET 3 AA6 4 TYR B 190 GLU B 197 -1 O LEU B 196 N LEU B 150 SHEET 4 AA6 4 VAL B 177 SER B 179 -1 N VAL B 178 O VAL B 195 SHEET 1 AA7 4 LYS B 133 LEU B 139 0 SHEET 2 AA7 4 ARG B 149 PHE B 157 -1 O ARG B 149 N LEU B 139 SHEET 3 AA7 4 TYR B 190 GLU B 197 -1 O LEU B 196 N LEU B 150 SHEET 4 AA7 4 MET B 183 GLN B 184 -1 N MET B 183 O GLN B 191 SHEET 1 AA8 4 ARG B 171 GLU B 172 0 SHEET 2 AA8 4 GLU B 163 LEU B 168 -1 N LEU B 168 O ARG B 171 SHEET 3 AA8 4 TYR B 206 GLU B 211 -1 O ARG B 209 N LYS B 165 SHEET 4 AA8 4 ILE B 219 ALA B 222 -1 O GLN B 221 N CYS B 208 SSBOND 1 CYS A 112 CYS A 168 1555 1555 2.04 SSBOND 2 CYS B 50 CYS B 114 1555 1555 2.08 SSBOND 3 CYS B 152 CYS B 208 1555 1555 2.01 CISPEP 1 GLY A 19 PRO A 20 0 4.41 CISPEP 2 TRP A 118 PRO A 119 0 4.01 CISPEP 3 TYR B 158 PRO B 159 0 4.93 SITE 1 AC1 5 ARG A 49 VAL A 109 TYR A 155 HOH A 301 SITE 2 AC1 5 ASP B 187 SITE 1 AC2 7 HIS A 30 ASP A 32 ALA A 33 TYR A 143 SITE 2 AC2 7 GLY A 144 ARG A 151 HOH A 372 SITE 1 AC3 4 ASN B 54 ARG B 58 GOL B 402 HOH B 504 SITE 1 AC4 6 ARG B 58 VAL B 59 ASP B 111 ARG B 115 SITE 2 AC4 6 GOL B 401 HOH B 530 CRYST1 154.153 60.002 51.713 90.00 108.75 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006487 0.000000 0.002202 0.00000 SCALE2 0.000000 0.016666 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020421 0.00000