HEADER GENE REGULATION 15-OCT-19 6T4X
TITLE ROR(GAMMA)T LIGAND BINDING DOMAIN IN COMPLEX WITH 25-
TITLE 2 HYDROXYCHOLESTEROL AND ALLOSTERIC LIGAND FM26
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1
COMPND 5 GROUP F MEMBER 3,RAR-RELATED ORPHAN RECEPTOR C,RETINOID-RELATED
COMPND 6 ORPHAN RECEPTOR-GAMMA;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: RORC, NR1F3, RORG, RZRG;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS NUCLEAR RECEPTOR, ALLOSTERIC, INVERSE AGONIST, INHIBITOR, GENE
KEYWDS 2 REGULATION
EXPDTA X-RAY DIFFRACTION
AUTHOR R.M.J.M.DE VRIES,F.A.MEIJER,L.BRUNSVELD
REVDAT 3 24-JAN-24 6T4X 1 REMARK
REVDAT 2 17-FEB-21 6T4X 1 JRNL
REVDAT 1 18-NOV-20 6T4X 0
JRNL AUTH R.M.J.M.DE VRIES,F.A.MEIJER,R.G.DOVESTON,
JRNL AUTH 2 I.A.LEIJTEN-VAN DE GEVEL,L.BRUNSVELD
JRNL TITL COOPERATIVITY BETWEEN THE ORTHOSTERIC AND ALLOSTERIC LIGAND
JRNL TITL 2 BINDING SITES OF ROR GAMMA T.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021
JRNL REFN ESSN 1091-6490
JRNL PMID 33536342
JRNL DOI 10.1073/PNAS.2021287118
REMARK 2
REMARK 2 RESOLUTION. 1.48 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.16_3549
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 94.29
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 108984
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.175
REMARK 3 R VALUE (WORKING SET) : 0.175
REMARK 3 FREE R VALUE : 0.185
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940
REMARK 3 FREE R VALUE TEST SET COUNT : 5383
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 94.2930 - 4.5986 1.00 3449 187 0.1676 0.1640
REMARK 3 2 4.5986 - 3.6500 1.00 3471 174 0.1360 0.1501
REMARK 3 3 3.6500 - 3.1886 1.00 3450 176 0.1643 0.1656
REMARK 3 4 3.1886 - 2.8970 1.00 3473 169 0.1722 0.1623
REMARK 3 5 2.8970 - 2.6894 1.00 3461 178 0.1682 0.1901
REMARK 3 6 2.6894 - 2.5308 1.00 3439 162 0.1617 0.1804
REMARK 3 7 2.5308 - 2.4040 1.00 3487 163 0.1697 0.1971
REMARK 3 8 2.4040 - 2.2994 1.00 3457 181 0.1687 0.1888
REMARK 3 9 2.2994 - 2.2108 1.00 3425 221 0.1728 0.1905
REMARK 3 10 2.2108 - 2.1346 1.00 3422 179 0.1733 0.1930
REMARK 3 11 2.1346 - 2.0678 1.00 3487 164 0.1696 0.1682
REMARK 3 12 2.0678 - 2.0087 1.00 3401 206 0.1771 0.1846
REMARK 3 13 2.0087 - 1.9558 1.00 3472 181 0.1784 0.1931
REMARK 3 14 1.9558 - 1.9081 1.00 3432 172 0.1849 0.1800
REMARK 3 15 1.9081 - 1.8647 1.00 3478 189 0.1882 0.2073
REMARK 3 16 1.8647 - 1.8250 1.00 3426 210 0.1889 0.2011
REMARK 3 17 1.8250 - 1.7885 1.00 3404 188 0.2008 0.2006
REMARK 3 18 1.7885 - 1.7548 1.00 3466 190 0.1983 0.2179
REMARK 3 19 1.7548 - 1.7234 1.00 3458 190 0.2179 0.2190
REMARK 3 20 1.7234 - 1.6942 1.00 3440 173 0.2233 0.2712
REMARK 3 21 1.6942 - 1.6669 1.00 3444 205 0.2241 0.2440
REMARK 3 22 1.6669 - 1.6412 1.00 3437 198 0.2203 0.2499
REMARK 3 23 1.6412 - 1.6171 1.00 3437 187 0.2279 0.2304
REMARK 3 24 1.6171 - 1.5943 1.00 3457 138 0.2343 0.2236
REMARK 3 25 1.5943 - 1.5728 1.00 3493 179 0.2472 0.2698
REMARK 3 26 1.5728 - 1.5523 1.00 3471 142 0.2467 0.3081
REMARK 3 27 1.5523 - 1.5329 1.00 3441 189 0.2621 0.2872
REMARK 3 28 1.5329 - 1.5144 1.00 3435 168 0.2858 0.3494
REMARK 3 29 1.5144 - 1.4968 1.00 3521 153 0.2906 0.2593
REMARK 3 30 1.4968 - 1.4800 1.00 3467 171 0.2950 0.3210
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.410
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.24
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): 3.0868 -40.3339 -4.9129
REMARK 3 T TENSOR
REMARK 3 T11: 0.1657 T22: 0.1577
REMARK 3 T33: 0.2878 T12: -0.0217
REMARK 3 T13: -0.0286 T23: 0.0196
REMARK 3 L TENSOR
REMARK 3 L11: 2.0040 L22: 0.6110
REMARK 3 L33: 0.9902 L12: -0.6182
REMARK 3 L13: 0.9621 L23: -0.3997
REMARK 3 S TENSOR
REMARK 3 S11: 0.0359 S12: -0.0250 S13: -0.0215
REMARK 3 S21: -0.0004 S22: -0.0117 S23: 0.0091
REMARK 3 S31: 0.0054 S32: -0.0207 S33: -0.0264
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6T4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-19.
REMARK 100 THE DEPOSITION ID IS D_1292104860.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 15-SEP-19
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108984
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480
REMARK 200 RESOLUTION RANGE LOW (A) : 98.540
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 39.10
REMARK 200 R MERGE (I) : 0.08300
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 25.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 6SAL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 55.48
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMSO4 + 0.1M TRIS, PH 8.5, VAPOR
REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.84567
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.69133
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 49.26850
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.11417
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.42283
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.84567
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 65.69133
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 82.11417
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 49.26850
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 16.42283
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 12130 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 735 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 245
REMARK 465 SER A 246
REMARK 465 SER A 247
REMARK 465 HIS A 248
REMARK 465 HIS A 249
REMARK 465 HIS A 250
REMARK 465 HIS A 251
REMARK 465 HIS A 252
REMARK 465 HIS A 253
REMARK 465 SER A 254
REMARK 465 SER A 255
REMARK 465 GLY A 256
REMARK 465 LEU A 257
REMARK 465 VAL A 258
REMARK 465 PRO A 259
REMARK 465 ARG A 260
REMARK 465 GLY A 261
REMARK 465 SER A 262
REMARK 465 HIS A 263
REMARK 465 MET A 264
REMARK 465 ALA A 265
REMARK 465 SER A 266
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLU A 395 CG CD OE1 OE2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 NH2 ARG A 437 O HOH A 701 1.32
REMARK 500 O HOH A 945 O HOH A 955 1.80
REMARK 500 O HOH A 925 O HOH A 942 1.81
REMARK 500 O HOH A 722 O HOH A 833 1.86
REMARK 500 OE1 GLU A 290 O HOH A 702 1.89
REMARK 500 O HOH A 826 O HOH A 907 1.92
REMARK 500 O HOH A 895 O HOH A 947 1.97
REMARK 500 OE1 GLU A 435 O HOH A 703 1.97
REMARK 500 O HOH A 900 O HOH A 928 1.98
REMARK 500 ND1 HIS A 322 O HOH A 704 1.99
REMARK 500 OE1 GLU A 326 O HOH A 705 2.02
REMARK 500 NH2 ARG A 288 O HOH A 702 2.02
REMARK 500 NZ LYS A 503 O HOH A 706 2.07
REMARK 500 NH1 ARG A 437 O HOH A 707 2.07
REMARK 500 NH1 ARG A 294 O HOH A 708 2.07
REMARK 500 OG SER A 408 O HOH A 709 2.08
REMARK 500 O HOH A 897 O HOH A 905 2.17
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 OE1 GLN A 495 NE2 GLN A 495 11554 1.90
REMARK 500 O HOH A 875 O HOH A 909 6555 1.99
REMARK 500 O HOH A 721 O HOH A 721 12545 2.10
REMARK 500 NE2 GLN A 495 NE2 GLN A 495 11554 2.12
REMARK 500 CD GLN A 495 NE2 GLN A 495 11554 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU A 326 N GLU A 326 CA 0.379
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 GLU A 326 CB - CA - C ANGL. DEV. = 15.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN A 286 -57.67 76.94
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue HC3 A 601
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue L3E A 602
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603
DBREF 6T4X A 265 507 UNP P51449 RORG_HUMAN 265 507
SEQADV 6T4X GLY A 245 UNP P51449 EXPRESSION TAG
SEQADV 6T4X SER A 246 UNP P51449 EXPRESSION TAG
SEQADV 6T4X SER A 247 UNP P51449 EXPRESSION TAG
SEQADV 6T4X HIS A 248 UNP P51449 EXPRESSION TAG
SEQADV 6T4X HIS A 249 UNP P51449 EXPRESSION TAG
SEQADV 6T4X HIS A 250 UNP P51449 EXPRESSION TAG
SEQADV 6T4X HIS A 251 UNP P51449 EXPRESSION TAG
SEQADV 6T4X HIS A 252 UNP P51449 EXPRESSION TAG
SEQADV 6T4X HIS A 253 UNP P51449 EXPRESSION TAG
SEQADV 6T4X SER A 254 UNP P51449 EXPRESSION TAG
SEQADV 6T4X SER A 255 UNP P51449 EXPRESSION TAG
SEQADV 6T4X GLY A 256 UNP P51449 EXPRESSION TAG
SEQADV 6T4X LEU A 257 UNP P51449 EXPRESSION TAG
SEQADV 6T4X VAL A 258 UNP P51449 EXPRESSION TAG
SEQADV 6T4X PRO A 259 UNP P51449 EXPRESSION TAG
SEQADV 6T4X ARG A 260 UNP P51449 EXPRESSION TAG
SEQADV 6T4X GLY A 261 UNP P51449 EXPRESSION TAG
SEQADV 6T4X SER A 262 UNP P51449 EXPRESSION TAG
SEQADV 6T4X HIS A 263 UNP P51449 EXPRESSION TAG
SEQADV 6T4X MET A 264 UNP P51449 EXPRESSION TAG
SEQADV 6T4X HIS A 455 UNP P51449 CYS 455 CONFLICT
SEQRES 1 A 263 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU
SEQRES 2 A 263 VAL PRO ARG GLY SER HIS MET ALA SER LEU THR GLU ILE
SEQRES 3 A 263 GLU HIS LEU VAL GLN SER VAL CYS LYS SER TYR ARG GLU
SEQRES 4 A 263 THR CYS GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG
SEQRES 5 A 263 SER ASN ILE PHE SER ARG GLU GLU VAL THR GLY TYR GLN
SEQRES 6 A 263 ARG LYS SER MET TRP GLU MET TRP GLU ARG CYS ALA HIS
SEQRES 7 A 263 HIS LEU THR GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA
SEQRES 8 A 263 LYS ARG LEU SER GLY PHE MET GLU LEU CYS GLN ASN ASP
SEQRES 9 A 263 GLN ILE VAL LEU LEU LYS ALA GLY ALA MET GLU VAL VAL
SEQRES 10 A 263 LEU VAL ARG MET CYS ARG ALA TYR ASN ALA ASP ASN ARG
SEQRES 11 A 263 THR VAL PHE PHE GLU GLY LYS TYR GLY GLY MET GLU LEU
SEQRES 12 A 263 PHE ARG ALA LEU GLY CYS SER GLU LEU ILE SER SER ILE
SEQRES 13 A 263 PHE ASP PHE SER HIS SER LEU SER ALA LEU HIS PHE SER
SEQRES 14 A 263 GLU ASP GLU ILE ALA LEU TYR THR ALA LEU VAL LEU ILE
SEQRES 15 A 263 ASN ALA HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL
SEQRES 16 A 263 GLU GLN LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS
SEQRES 17 A 263 HIS LEU HIS LYS THR HIS ARG GLN SER ILE LEU ALA LYS
SEQRES 18 A 263 LEU PRO PRO LYS GLY LYS LEU ARG SER LEU CYS SER GLN
SEQRES 19 A 263 HIS VAL GLU ARG LEU GLN ILE PHE GLN HIS LEU HIS PRO
SEQRES 20 A 263 ILE VAL VAL GLN ALA ALA PHE PRO PRO LEU TYR LYS GLU
SEQRES 21 A 263 LEU PHE SER
HET HC3 A 601 29
HET L3E A 602 32
HET GOL A 603 12
HETNAM HC3 25-HYDROXYCHOLESTEROL
HETNAM L3E 4-[(~{E})-[3-[2-CHLORANYL-6-(TRIFLUOROMETHYL)PHENYL]-5-
HETNAM 2 L3E (1~{H}-PYRROL-3-YL)-1,2-OXAZOL-4-
HETNAM 3 L3E YL]METHYLIDENEAMINO]BENZOIC ACID
HETNAM GOL GLYCEROL
HETSYN HC3 (3BETA)-CHOLEST-5-ENE-3,25-DIOL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 2 HC3 C27 H46 O2
FORMUL 3 L3E C22 H13 CL F3 N3 O3
FORMUL 4 GOL C3 H8 O3
FORMUL 5 HOH *255(H2 O)
HELIX 1 AA1 THR A 268 CYS A 285 1 18
HELIX 2 AA2 ARG A 288 GLN A 295 1 8
HELIX 3 AA3 ARG A 296 ASN A 298 5 3
HELIX 4 AA4 SER A 301 LYS A 311 1 11
HELIX 5 AA5 SER A 312 LEU A 338 1 27
HELIX 6 AA6 CYS A 345 MET A 365 1 21
HELIX 7 AA7 GLY A 384 GLY A 392 5 9
HELIX 8 AA8 CYS A 393 ALA A 409 1 17
HELIX 9 AA9 SER A 413 ILE A 426 1 14
HELIX 10 AB1 GLU A 435 THR A 457 1 23
HELIX 11 AB2 ARG A 459 LEU A 466 5 8
HELIX 12 AB3 PRO A 468 HIS A 490 1 23
HELIX 13 AB4 PHE A 498 PHE A 506 1 9
SHEET 1 AA1 3 TYR A 369 ASN A 370 0
SHEET 2 AA1 3 THR A 375 PHE A 378 -1 O THR A 375 N ASN A 370
SHEET 3 AA1 3 LYS A 381 GLY A 383 -1 O LYS A 381 N PHE A 378
SITE 1 AC1 9 GLN A 286 CYS A 320 LEU A 324 MET A 365
SITE 2 AC1 9 HIS A 479 LEU A 483 PHE A 486 GOL A 603
SITE 3 AC1 9 HOH A 810
SITE 1 AC2 16 TRP A 317 LEU A 324 THR A 325 GLN A 329
SITE 2 AC2 16 LEU A 353 LYS A 354 MET A 358 VAL A 480
SITE 3 AC2 16 LEU A 483 GLN A 484 ALA A 496 ALA A 497
SITE 4 AC2 16 PHE A 498 TYR A 502 LEU A 505 PHE A 506
SITE 1 AC3 7 GLN A 286 PHE A 377 PHE A 378 GLU A 379
SITE 2 AC3 7 HC3 A 601 HOH A 736 HOH A 882
CRYST1 108.880 108.880 98.537 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009184 0.005303 0.000000 0.00000
SCALE2 0.000000 0.010605 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010148 0.00000