HEADER GENE REGULATION 15-OCT-19 6T50 TITLE ROR(GAMMA)T LIGAND BINDING DOMAIN IN COMPLEX WITH 25- TITLE 2 HYDROXYCHOLESTEROL AND ALLOSTERIC LIGAND GLENMARK COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR RECEPTOR ROR-GAMMA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NUCLEAR RECEPTOR RZR-GAMMA,NUCLEAR RECEPTOR SUBFAMILY 1 COMPND 5 GROUP F MEMBER 3,RAR-RELATED ORPHAN RECEPTOR C,RETINOID-RELATED COMPND 6 ORPHAN RECEPTOR-GAMMA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RORC, NR1F3, RORG, RZRG; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEAR RECEPTOR, ALLOSTERIC, INVERSE AGONIST, INHIBITOR, GENE KEYWDS 2 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR R.M.J.M.DE VRIES,F.A.MEIJER,L.BRUNSVELD REVDAT 3 24-JAN-24 6T50 1 REMARK REVDAT 2 17-FEB-21 6T50 1 JRNL REVDAT 1 18-NOV-20 6T50 0 JRNL AUTH R.M.J.M.DE VRIES,F.A.MEIJER,R.G.DOVESTON, JRNL AUTH 2 I.A.LEIJTEN-VAN DE GEVEL,L.BRUNSVELD JRNL TITL COOPERATIVITY BETWEEN THE ORTHOSTERIC AND ALLOSTERIC LIGAND JRNL TITL 2 BINDING SITES OF ROR GAMMA T. JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021 JRNL REFN ESSN 1091-6490 JRNL PMID 33536342 JRNL DOI 10.1073/PNAS.2021287118 REMARK 2 REMARK 2 RESOLUTION. 1.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 93.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 58851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2950 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 93.8120 - 5.1590 1.00 2690 111 0.1742 0.2167 REMARK 3 2 5.1590 - 4.0948 1.00 2662 151 0.1479 0.1452 REMARK 3 3 4.0948 - 3.5772 1.00 2676 141 0.1648 0.2149 REMARK 3 4 3.5772 - 3.2501 1.00 2668 144 0.1843 0.2043 REMARK 3 5 3.2501 - 3.0171 1.00 2628 162 0.1967 0.2362 REMARK 3 6 3.0171 - 2.8392 1.00 2652 133 0.1912 0.2206 REMARK 3 7 2.8392 - 2.6970 1.00 2685 143 0.2027 0.1913 REMARK 3 8 2.6970 - 2.5796 1.00 2639 138 0.1903 0.2389 REMARK 3 9 2.5796 - 2.4803 1.00 2716 121 0.1973 0.2063 REMARK 3 10 2.4803 - 2.3947 1.00 2668 114 0.1853 0.1884 REMARK 3 11 2.3947 - 2.3198 1.00 2665 138 0.2007 0.2230 REMARK 3 12 2.3198 - 2.2535 1.00 2672 131 0.2053 0.2171 REMARK 3 13 2.2535 - 2.1942 1.00 2694 129 0.2120 0.2312 REMARK 3 14 2.1942 - 2.1407 1.00 2644 152 0.2099 0.2838 REMARK 3 15 2.1407 - 2.0920 1.00 2668 121 0.2143 0.2575 REMARK 3 16 2.0920 - 2.0475 1.00 2649 149 0.2460 0.2566 REMARK 3 17 2.0475 - 2.0065 1.00 2657 135 0.2520 0.2876 REMARK 3 18 2.0065 - 1.9686 1.00 2634 180 0.2844 0.2867 REMARK 3 19 1.9686 - 1.9335 1.00 2632 170 0.3209 0.3792 REMARK 3 20 1.9335 - 1.9007 1.00 2671 133 0.3498 0.4127 REMARK 3 21 1.9007 - 1.8700 1.00 2631 154 0.3833 0.3944 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 267:507) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1765 -39.8830 -5.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.3178 T22: 0.3944 REMARK 3 T33: 0.3860 T12: -0.0549 REMARK 3 T13: -0.0645 T23: 0.0537 REMARK 3 L TENSOR REMARK 3 L11: 4.3198 L22: 1.7497 REMARK 3 L33: 2.6660 L12: -1.6362 REMARK 3 L13: 2.3099 L23: -1.8013 REMARK 3 S TENSOR REMARK 3 S11: 0.2204 S12: 0.4167 S13: -0.1892 REMARK 3 S21: -0.0252 S22: -0.1148 S23: 0.0768 REMARK 3 S31: 0.0777 S32: 0.1676 S33: -0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6T50 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-SEP-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976254 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58851 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.870 REMARK 200 RESOLUTION RANGE LOW (A) : 108.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 39.00 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6SAL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2 + 6% PEG6K + 0.1M TRIS, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.16967 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.33933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 54.25450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 90.42417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.08483 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 36.16967 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 72.33933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 90.42417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 54.25450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 18.08483 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 245 REMARK 465 SER A 246 REMARK 465 SER A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 SER A 254 REMARK 465 SER A 255 REMARK 465 GLY A 256 REMARK 465 LEU A 257 REMARK 465 VAL A 258 REMARK 465 PRO A 259 REMARK 465 ARG A 260 REMARK 465 GLY A 261 REMARK 465 SER A 262 REMARK 465 HIS A 263 REMARK 465 MET A 264 REMARK 465 ALA A 265 REMARK 465 SER A 266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 271 O HOH A 701 1.89 REMARK 500 NH2 ARG A 374 O HOH A 702 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 490 C PRO A 491 N 0.143 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 491 C - N - CA ANGL. DEV. = 10.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 286 -57.99 75.97 REMARK 500 GLU A 435 64.05 -113.93 REMARK 500 LEU A 505 -39.43 -134.16 REMARK 500 PHE A 506 -115.62 -91.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 MET A 313 -11.52 REMARK 500 MET A 313 -12.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HC3 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MJE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 DBREF 6T50 A 265 507 UNP P51449 RORG_HUMAN 265 507 SEQADV 6T50 GLY A 245 UNP P51449 EXPRESSION TAG SEQADV 6T50 SER A 246 UNP P51449 EXPRESSION TAG SEQADV 6T50 SER A 247 UNP P51449 EXPRESSION TAG SEQADV 6T50 HIS A 248 UNP P51449 EXPRESSION TAG SEQADV 6T50 HIS A 249 UNP P51449 EXPRESSION TAG SEQADV 6T50 HIS A 250 UNP P51449 EXPRESSION TAG SEQADV 6T50 HIS A 251 UNP P51449 EXPRESSION TAG SEQADV 6T50 HIS A 252 UNP P51449 EXPRESSION TAG SEQADV 6T50 HIS A 253 UNP P51449 EXPRESSION TAG SEQADV 6T50 SER A 254 UNP P51449 EXPRESSION TAG SEQADV 6T50 SER A 255 UNP P51449 EXPRESSION TAG SEQADV 6T50 GLY A 256 UNP P51449 EXPRESSION TAG SEQADV 6T50 LEU A 257 UNP P51449 EXPRESSION TAG SEQADV 6T50 VAL A 258 UNP P51449 EXPRESSION TAG SEQADV 6T50 PRO A 259 UNP P51449 EXPRESSION TAG SEQADV 6T50 ARG A 260 UNP P51449 EXPRESSION TAG SEQADV 6T50 GLY A 261 UNP P51449 EXPRESSION TAG SEQADV 6T50 SER A 262 UNP P51449 EXPRESSION TAG SEQADV 6T50 HIS A 263 UNP P51449 EXPRESSION TAG SEQADV 6T50 MET A 264 UNP P51449 EXPRESSION TAG SEQADV 6T50 HIS A 455 UNP P51449 CYS 455 CONFLICT SEQRES 1 A 263 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 263 VAL PRO ARG GLY SER HIS MET ALA SER LEU THR GLU ILE SEQRES 3 A 263 GLU HIS LEU VAL GLN SER VAL CYS LYS SER TYR ARG GLU SEQRES 4 A 263 THR CYS GLN LEU ARG LEU GLU ASP LEU LEU ARG GLN ARG SEQRES 5 A 263 SER ASN ILE PHE SER ARG GLU GLU VAL THR GLY TYR GLN SEQRES 6 A 263 ARG LYS SER MET TRP GLU MET TRP GLU ARG CYS ALA HIS SEQRES 7 A 263 HIS LEU THR GLU ALA ILE GLN TYR VAL VAL GLU PHE ALA SEQRES 8 A 263 LYS ARG LEU SER GLY PHE MET GLU LEU CYS GLN ASN ASP SEQRES 9 A 263 GLN ILE VAL LEU LEU LYS ALA GLY ALA MET GLU VAL VAL SEQRES 10 A 263 LEU VAL ARG MET CYS ARG ALA TYR ASN ALA ASP ASN ARG SEQRES 11 A 263 THR VAL PHE PHE GLU GLY LYS TYR GLY GLY MET GLU LEU SEQRES 12 A 263 PHE ARG ALA LEU GLY CYS SER GLU LEU ILE SER SER ILE SEQRES 13 A 263 PHE ASP PHE SER HIS SER LEU SER ALA LEU HIS PHE SER SEQRES 14 A 263 GLU ASP GLU ILE ALA LEU TYR THR ALA LEU VAL LEU ILE SEQRES 15 A 263 ASN ALA HIS ARG PRO GLY LEU GLN GLU LYS ARG LYS VAL SEQRES 16 A 263 GLU GLN LEU GLN TYR ASN LEU GLU LEU ALA PHE HIS HIS SEQRES 17 A 263 HIS LEU HIS LYS THR HIS ARG GLN SER ILE LEU ALA LYS SEQRES 18 A 263 LEU PRO PRO LYS GLY LYS LEU ARG SER LEU CYS SER GLN SEQRES 19 A 263 HIS VAL GLU ARG LEU GLN ILE PHE GLN HIS LEU HIS PRO SEQRES 20 A 263 ILE VAL VAL GLN ALA ALA PHE PRO PRO LEU TYR LYS GLU SEQRES 21 A 263 LEU PHE SER HET HC3 A 601 29 HET MJE A 602 28 HET GOL A 603 6 HETNAM HC3 25-HYDROXYCHOLESTEROL HETNAM MJE 4-[1-[2,6-BIS(CHLORANYL)PHENYL]CARBONYL-5-METHYL- HETNAM 2 MJE THIENO[3,2-C]PYRAZOL-3-YL]BENZOIC ACID HETNAM GOL GLYCEROL HETSYN HC3 (3BETA)-CHOLEST-5-ENE-3,25-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 HC3 C27 H46 O2 FORMUL 3 MJE C20 H12 CL2 N2 O3 S FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *92(H2 O) HELIX 1 AA1 THR A 268 CYS A 285 1 18 HELIX 2 AA2 ARG A 288 GLN A 295 1 8 HELIX 3 AA3 ARG A 296 ASN A 298 5 3 HELIX 4 AA4 SER A 301 LYS A 311 1 11 HELIX 5 AA5 SER A 312 LEU A 338 1 27 HELIX 6 AA6 CYS A 345 MET A 365 1 21 HELIX 7 AA7 GLY A 384 GLY A 392 5 9 HELIX 8 AA8 CYS A 393 ALA A 409 1 17 HELIX 9 AA9 SER A 413 ILE A 426 1 14 HELIX 10 AB1 GLU A 435 THR A 457 1 23 HELIX 11 AB2 ARG A 459 LEU A 466 5 8 HELIX 12 AB3 PRO A 468 HIS A 490 1 23 HELIX 13 AB4 PHE A 498 GLU A 504 1 7 SHEET 1 AA1 3 TYR A 369 ASN A 370 0 SHEET 2 AA1 3 THR A 375 PHE A 378 -1 O THR A 375 N ASN A 370 SHEET 3 AA1 3 LYS A 381 GLY A 383 -1 O LYS A 381 N PHE A 378 SITE 1 AC1 8 GLN A 286 LEU A 324 MET A 365 LEU A 396 SITE 2 AC1 8 HIS A 479 LEU A 483 GOL A 603 HOH A 723 SITE 1 AC2 12 ALA A 321 LEU A 324 THR A 325 ILE A 328 SITE 2 AC2 12 GLN A 329 LYS A 354 LEU A 483 GLN A 484 SITE 3 AC2 12 ALA A 496 ALA A 497 PHE A 498 LEU A 505 SITE 1 AC3 5 HIS A 323 PHE A 377 PHE A 378 GLU A 379 SITE 2 AC3 5 HC3 A 601 CRYST1 108.325 108.325 108.509 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009231 0.005330 0.000000 0.00000 SCALE2 0.000000 0.010660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009216 0.00000