HEADER PLANT PROTEIN 18-OCT-19 6T6K TITLE Y201W MUTANT OF THE ORANGE CAROTENOID PROTEIN FROM SYNECHOCYSTIS AT PH TITLE 2 6.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORANGE CAROTENOID-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OCP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. (STRAIN PCC 6803 / KAZUSA); SOURCE 3 ORGANISM_TAXID: 1111708; SOURCE 4 STRAIN: PCC 6803 / KAZUSA; SOURCE 5 GENE: SLR1963; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ORANGE CAROTENOID PROTEIN, PHOTOACTIVE PROTEIN, MUTANT, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.N.SLUCHANKO,I.GUSHCHIN,V.S.BOTNAREVSKIY,Y.B.SLONIMSKIY,A.REMEEVA, AUTHOR 2 K.KOVALEV,A.V.STEPANOV,V.GORDELIY,E.G.MAKSIMOV REVDAT 3 24-JAN-24 6T6K 1 REMARK REVDAT 2 29-DEC-21 6T6K 1 JRNL REVDAT 1 18-NOV-20 6T6K 0 JRNL AUTH I.A.YAROSHEVICH,E.G.MAKSIMOV,N.N.SLUCHANKO,D.V.ZLENKO, JRNL AUTH 2 A.V.STEPANOV,E.A.SLUTSKAYA,Y.B.SLONIMSKIY,V.S.BOTNAREVSKII, JRNL AUTH 3 A.REMEEVA,I.GUSHCHIN,K.KOVALEV,V.I.GORDELIY,I.V.SHELAEV, JRNL AUTH 4 F.E.GOSTEV,D.KHAKHULIN,V.V.PODDUBNYY,T.S.GOSTEV, JRNL AUTH 5 D.A.CHEREPANOV,T.POLIVKA,M.KLOZ,T.FRIEDRICH,V.Z.PASCHENKO, JRNL AUTH 6 V.A.NADTOCHENKO,A.B.RUBIN,M.P.KIRPICHNIKOV JRNL TITL ROLE OF HYDROGEN BOND ALTERNATION AND CHARGE TRANSFER STATES JRNL TITL 2 IN PHOTOACTIVATION OF THE ORANGE CAROTENOID PROTEIN. JRNL REF COMMUN BIOL V. 4 539 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 33972665 JRNL DOI 10.1038/S42003-021-02022-3 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 69781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5102 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 263 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2343 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 302 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -2.26000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.047 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.263 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.981 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.974 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2598 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2459 ; 0.007 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3552 ; 1.357 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5705 ; 1.526 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 336 ; 5.766 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;31.803 ;21.486 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 418 ;12.336 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;20.265 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2988 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 542 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5057 ;16.467 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1758 -23.0147 15.2842 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: 0.0049 REMARK 3 T33: 0.0258 T12: 0.0009 REMARK 3 T13: 0.0003 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.0096 L22: 0.0325 REMARK 3 L33: 0.0278 L12: 0.0050 REMARK 3 L13: 0.0029 L23: -0.0076 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: 0.0006 S13: -0.0013 REMARK 3 S21: -0.0035 S22: -0.0010 S23: -0.0001 REMARK 3 S31: 0.0006 S32: -0.0030 S33: 0.0014 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 402 A 410 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8006 -28.4321 10.8465 REMARK 3 T TENSOR REMARK 3 T11: 0.0148 T22: 0.0143 REMARK 3 T33: 0.0516 T12: -0.0010 REMARK 3 T13: -0.0085 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.2513 L22: 0.1356 REMARK 3 L33: 0.4187 L12: 0.1387 REMARK 3 L13: 0.3232 L23: 0.1765 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0388 S13: -0.0448 REMARK 3 S21: 0.0072 S22: 0.0335 S23: -0.0180 REMARK 3 S31: -0.0133 S32: 0.0472 S33: -0.0384 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6T6K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73479 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 44.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.20 REMARK 200 R MERGE (I) : 0.04700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : 1.53200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4XB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M DL-GLUTAMIC ACID MONOHYDRATE; REMARK 280 0.1M DL-ALANINE; 0.1M GLYCINE; 0.1M DL-LYSINE MONOHYDROCHLORIDE; REMARK 280 0.1M DL-SERINE; 0.1M IMIDAZOLE; MES MONOHYDRATE (ACID), PH 6.5; REMARK 280 20% V/V ETHYLENE GLYCOL; 10 % W/V PEG 8000, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.69600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.34800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.34800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.69600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ARG A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 THR A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ALA A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 165 REMARK 465 GLY A 166 REMARK 465 LYS A 167 REMARK 465 ASP A 168 REMARK 465 ALA A 260 REMARK 465 GLU A 261 REMARK 465 ASN A 314 REMARK 465 PHE A 315 REMARK 465 ALA A 316 REMARK 465 ARG A 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 69 NZ REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 730 O HOH A 757 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLY A 402 REMARK 610 GLY A 405 REMARK 610 GLY A 406 REMARK 610 GLY A 407 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ECH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HIS A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLY A 410 DBREF 6T6K A 1 317 UNP P74102 OCP_SYNY3 1 317 SEQADV 6T6K MET A -14 UNP P74102 INITIATING METHIONINE SEQADV 6T6K ARG A -13 UNP P74102 EXPRESSION TAG SEQADV 6T6K GLY A -12 UNP P74102 EXPRESSION TAG SEQADV 6T6K SER A -11 UNP P74102 EXPRESSION TAG SEQADV 6T6K HIS A -10 UNP P74102 EXPRESSION TAG SEQADV 6T6K HIS A -9 UNP P74102 EXPRESSION TAG SEQADV 6T6K HIS A -8 UNP P74102 EXPRESSION TAG SEQADV 6T6K HIS A -7 UNP P74102 EXPRESSION TAG SEQADV 6T6K HIS A -6 UNP P74102 EXPRESSION TAG SEQADV 6T6K HIS A -5 UNP P74102 EXPRESSION TAG SEQADV 6T6K THR A -4 UNP P74102 EXPRESSION TAG SEQADV 6T6K ASP A -3 UNP P74102 EXPRESSION TAG SEQADV 6T6K PRO A -2 UNP P74102 EXPRESSION TAG SEQADV 6T6K ALA A -1 UNP P74102 EXPRESSION TAG SEQADV 6T6K THR A 0 UNP P74102 EXPRESSION TAG SEQADV 6T6K TRP A 201 UNP P74102 TYR 201 ENGINEERED MUTATION SEQRES 1 A 332 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 A 332 ALA THR MET PRO PHE THR ILE ASP SER ALA ARG GLY ILE SEQRES 3 A 332 PHE PRO ASN THR LEU ALA ALA ASP VAL VAL PRO ALA THR SEQRES 4 A 332 ILE ALA ARG PHE SER GLN LEU ASN ALA GLU ASP GLN LEU SEQRES 5 A 332 ALA LEU ILE TRP PHE ALA TYR LEU GLU MET GLY LYS THR SEQRES 6 A 332 LEU THR ILE ALA ALA PRO GLY ALA ALA SER MET GLN LEU SEQRES 7 A 332 ALA GLU ASN ALA LEU LYS GLU ILE GLN ALA MET GLY PRO SEQRES 8 A 332 LEU GLN GLN THR GLN ALA MET CYS ASP LEU ALA ASN ARG SEQRES 9 A 332 ALA ASP THR PRO LEU CYS ARG THR TYR ALA SER TRP SER SEQRES 10 A 332 PRO ASN ILE LYS LEU GLY PHE TRP TYR ARG LEU GLY GLU SEQRES 11 A 332 LEU MET GLU GLN GLY PHE VAL ALA PRO ILE PRO ALA GLY SEQRES 12 A 332 TYR GLN LEU SER ALA ASN ALA ASN ALA VAL LEU ALA THR SEQRES 13 A 332 ILE GLN GLY LEU GLU SER GLY GLN GLN ILE THR VAL LEU SEQRES 14 A 332 ARG ASN ALA VAL VAL ASP MET GLY PHE THR ALA GLY LYS SEQRES 15 A 332 ASP GLY LYS ARG ILE ALA GLU PRO VAL VAL PRO PRO GLN SEQRES 16 A 332 ASP THR ALA SER ARG THR LYS VAL SER ILE GLU GLY VAL SEQRES 17 A 332 THR ASN ALA THR VAL LEU ASN TRP MET ASP ASN LEU ASN SEQRES 18 A 332 ALA ASN ASP PHE ASP THR LEU ILE GLU LEU PHE THR SER SEQRES 19 A 332 ASP GLY ALA LEU GLN PRO PRO PHE GLN ARG PRO ILE VAL SEQRES 20 A 332 GLY LYS GLU ASN VAL LEU ARG PHE PHE ARG GLU GLU CYS SEQRES 21 A 332 GLN ASN LEU LYS LEU ILE PRO GLU ARG GLY VAL THR GLU SEQRES 22 A 332 PRO ALA GLU ASP GLY PHE THR GLN ILE LYS VAL THR GLY SEQRES 23 A 332 LYS VAL GLN THR PRO TRP PHE GLY GLY ASN VAL GLY MET SEQRES 24 A 332 ASN ILE ALA TRP ARG PHE LEU LEU ASN PRO GLU GLY LYS SEQRES 25 A 332 ILE PHE PHE VAL ALA ILE ASP LEU LEU ALA SER PRO LYS SEQRES 26 A 332 GLU LEU LEU ASN PHE ALA ARG HET ECH A 401 41 HET GLY A 402 4 HET CL A 403 1 HET IMD A 404 5 HET GLY A 405 4 HET GLY A 406 4 HET GLY A 407 4 HET HIS A 408 11 HET EDO A 409 4 HET GLY A 410 5 HETNAM ECH BETA,BETA-CAROTEN-4-ONE HETNAM GLY GLYCINE HETNAM CL CHLORIDE ION HETNAM IMD IMIDAZOLE HETNAM HIS HISTIDINE HETNAM EDO 1,2-ETHANEDIOL HETSYN ECH ECHINENONE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ECH C40 H54 O FORMUL 3 GLY 5(C2 H5 N O2) FORMUL 4 CL CL 1- FORMUL 5 IMD C3 H5 N2 1+ FORMUL 9 HIS C6 H10 N3 O2 1+ FORMUL 10 EDO C2 H6 O2 FORMUL 12 HOH *302(H2 O) HELIX 1 AA1 THR A 4 ARG A 9 1 6 HELIX 2 AA2 ASP A 19 GLN A 30 1 12 HELIX 3 AA3 ASN A 32 GLY A 48 1 17 HELIX 4 AA4 GLY A 57 ALA A 73 1 17 HELIX 5 AA5 GLY A 75 ARG A 89 1 15 HELIX 6 AA6 THR A 92 SER A 100 1 9 HELIX 7 AA7 SER A 102 GLN A 119 1 18 HELIX 8 AA8 SER A 132 GLY A 144 1 13 HELIX 9 AA9 GLU A 146 ASP A 160 1 15 HELIX 10 AB1 ASP A 181 ARG A 185 5 5 HELIX 11 AB2 ASN A 195 ALA A 207 1 13 HELIX 12 AB3 ASP A 209 GLU A 215 1 7 HELIX 13 AB4 GLY A 233 CYS A 245 1 13 HELIX 14 AB5 PHE A 278 VAL A 282 5 5 HELIX 15 AB6 SER A 308 LEU A 312 5 5 SHEET 1 AA1 6 ILE A 231 VAL A 232 0 SHEET 2 AA1 6 PHE A 217 GLN A 224 -1 N LEU A 223 O ILE A 231 SHEET 3 AA1 6 ILE A 298 LEU A 305 1 O VAL A 301 N GLN A 224 SHEET 4 AA1 6 MET A 284 LEU A 292 -1 N LEU A 291 O PHE A 300 SHEET 5 AA1 6 THR A 265 GLN A 274 -1 N ILE A 267 O PHE A 290 SHEET 6 AA1 6 LYS A 249 GLU A 258 -1 N ILE A 251 O LYS A 272 SITE 1 AC1 19 ILE A 40 TYR A 44 ILE A 53 LEU A 107 SITE 2 AC1 19 TRP A 110 TYR A 111 GLY A 114 ILE A 151 SITE 3 AC1 19 THR A 152 VAL A 158 TRP A 201 LEU A 205 SITE 4 AC1 19 CYS A 245 LEU A 250 VAL A 273 TRP A 277 SITE 5 AC1 19 MET A 284 TRP A 288 GLY A 407 SITE 1 AC2 7 ALA A 55 PRO A 56 GLY A 57 TRP A 277 SITE 2 AC2 7 HOH A 548 HOH A 583 HOH A 594 SITE 1 AC3 2 THR A 275 HOH A 643 SITE 1 AC4 6 GLN A 180 ASN A 206 ASN A 208 ASN A 247 SITE 2 AC4 6 HOH A 614 HOH A 752 SITE 1 AC5 5 ALA A 67 GLU A 70 PRO A 93 THR A 97 SITE 2 AC5 5 HOH A 513 SITE 1 AC6 4 GLY A 144 GLU A 191 GLY A 192 HOH A 528 SITE 1 AC7 7 ARG A 155 PHE A 240 GLU A 244 ECH A 401 SITE 2 AC7 7 HOH A 522 HOH A 603 HOH A 688 SITE 1 AC8 6 GLN A 119 GLY A 120 PHE A 121 ASP A 211 SITE 2 AC8 6 ILE A 214 GLU A 215 SITE 1 AC9 7 GLU A 34 THR A 80 MET A 83 MET A 117 SITE 2 AC9 7 ALA A 123 PRO A 124 PRO A 126 SITE 1 AD1 9 SER A 29 GLN A 36 ALA A 87 ASN A 88 SITE 2 AD1 9 ARG A 89 ARG A 229 HOH A 503 HOH A 562 SITE 3 AD1 9 HOH A 617 CRYST1 82.726 82.726 88.044 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012088 0.006979 0.000000 0.00000 SCALE2 0.000000 0.013958 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011358 0.00000