HEADER PLANT PROTEIN 18-OCT-19 6T6M TITLE Y201W MUTANT OF THE ORANGE CAROTENOID PROTEIN FROM SYNECHOCYSTIS AT PH TITLE 2 5.5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORANGE CAROTENOID-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OCP; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: TYR201 IS MUTATED TO TRP IN SYNECHOCYSTIS OCP. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: SYNECHOCYSTIS SP. PCC 6803; SOURCE 5 GENE: SLR1963; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ORANGE CAROTENOID PROTEIN, PHOTOACTIVE PROTEIN, MUTANT, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.N.SLUCHANKO,I.GUSHCHIN,V.S.BOTNAREVSKIY,Y.B.SLONIMSKIY,A.REMEEVA, AUTHOR 2 K.KOVALEV,A.V.STEPANOV,V.GORDELIY,E.G.MAKSIMOV REVDAT 3 24-JAN-24 6T6M 1 REMARK REVDAT 2 29-DEC-21 6T6M 1 JRNL REVDAT 1 18-NOV-20 6T6M 0 JRNL AUTH I.A.YAROSHEVICH,E.G.MAKSIMOV,N.N.SLUCHANKO,D.V.ZLENKO, JRNL AUTH 2 A.V.STEPANOV,E.A.SLUTSKAYA,Y.B.SLONIMSKIY,V.S.BOTNAREVSKII, JRNL AUTH 3 A.REMEEVA,I.GUSHCHIN,K.KOVALEV,V.I.GORDELIY,I.V.SHELAEV, JRNL AUTH 4 F.E.GOSTEV,D.KHAKHULIN,V.V.PODDUBNYY,T.S.GOSTEV, JRNL AUTH 5 D.A.CHEREPANOV,T.POLIVKA,M.KLOZ,T.FRIEDRICH,V.Z.PASCHENKO, JRNL AUTH 6 V.A.NADTOCHENKO,A.B.RUBIN,M.P.KIRPICHNIKOV JRNL TITL ROLE OF HYDROGEN BOND ALTERNATION AND CHARGE TRANSFER STATES JRNL TITL 2 IN PHOTOACTIVATION OF THE ORANGE CAROTENOID PROTEIN. JRNL REF COMMUN BIOL V. 4 539 2021 JRNL REFN ESSN 2399-3642 JRNL PMID 33972665 JRNL DOI 10.1038/S42003-021-02022-3 REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0257 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 54626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2826 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3956 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2355 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 337 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.42000 REMARK 3 B33 (A**2) : -1.36000 REMARK 3 B12 (A**2) : 0.21000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.058 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.768 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.983 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2561 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2408 ; 0.005 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3506 ; 1.263 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5581 ; 1.383 ; 1.568 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 6.061 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;31.985 ;21.361 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 408 ;12.009 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;21.918 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 340 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2928 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 538 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4968 ;14.101 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 1301 REMARK 3 ORIGIN FOR THE GROUP (A): -22.2354 -7.7713 -15.0559 REMARK 3 T TENSOR REMARK 3 T11: 0.0006 T22: 0.0003 REMARK 3 T33: 0.0228 T12: 0.0001 REMARK 3 T13: -0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0210 L22: 0.0140 REMARK 3 L33: 0.0072 L12: 0.0091 REMARK 3 L13: -0.0018 L23: -0.0040 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.0010 S13: 0.0004 REMARK 3 S21: -0.0007 S22: 0.0012 S23: 0.0021 REMARK 3 S31: 0.0019 S32: -0.0004 S33: 0.0004 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 0 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0000 0.0000 0.0000 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0080 REMARK 3 T33: 0.0080 T12: 0.0000 REMARK 3 T13: 0.0000 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6T6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976250 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57478 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 41.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.20 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 37.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 20.20 REMARK 200 R MERGE FOR SHELL (I) : 1.23800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4XB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH5.5 20 % W/V REMARK 280 PEG 3000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.32533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.16267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.16267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 58.32533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ARG A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 THR A -4 REMARK 465 ASP A -3 REMARK 465 PRO A -2 REMARK 465 ALA A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ALA A 165 REMARK 465 GLY A 166 REMARK 465 LYS A 167 REMARK 465 ASP A 168 REMARK 465 ASN A 314 REMARK 465 PHE A 315 REMARK 465 ALA A 316 REMARK 465 ARG A 317 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 118 CD OE1 OE2 REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 310 CD CE NZ REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HIS A 403 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ECH A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HIS A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6T6K RELATED DB: PDB REMARK 900 THE SAME PROTEIN AT DIFFERENT PH DBREF 6T6M A 1 317 UNP P74102 OCP_SYNY3 1 317 SEQADV 6T6M MET A -14 UNP P74102 INITIATING METHIONINE SEQADV 6T6M ARG A -13 UNP P74102 EXPRESSION TAG SEQADV 6T6M GLY A -12 UNP P74102 EXPRESSION TAG SEQADV 6T6M SER A -11 UNP P74102 EXPRESSION TAG SEQADV 6T6M HIS A -10 UNP P74102 EXPRESSION TAG SEQADV 6T6M HIS A -9 UNP P74102 EXPRESSION TAG SEQADV 6T6M HIS A -8 UNP P74102 EXPRESSION TAG SEQADV 6T6M HIS A -7 UNP P74102 EXPRESSION TAG SEQADV 6T6M HIS A -6 UNP P74102 EXPRESSION TAG SEQADV 6T6M HIS A -5 UNP P74102 EXPRESSION TAG SEQADV 6T6M THR A -4 UNP P74102 EXPRESSION TAG SEQADV 6T6M ASP A -3 UNP P74102 EXPRESSION TAG SEQADV 6T6M PRO A -2 UNP P74102 EXPRESSION TAG SEQADV 6T6M ALA A -1 UNP P74102 EXPRESSION TAG SEQADV 6T6M THR A 0 UNP P74102 EXPRESSION TAG SEQADV 6T6M TRP A 201 UNP P74102 TYR 201 ENGINEERED MUTATION SEQRES 1 A 332 MET ARG GLY SER HIS HIS HIS HIS HIS HIS THR ASP PRO SEQRES 2 A 332 ALA THR MET PRO PHE THR ILE ASP SER ALA ARG GLY ILE SEQRES 3 A 332 PHE PRO ASN THR LEU ALA ALA ASP VAL VAL PRO ALA THR SEQRES 4 A 332 ILE ALA ARG PHE SER GLN LEU ASN ALA GLU ASP GLN LEU SEQRES 5 A 332 ALA LEU ILE TRP PHE ALA TYR LEU GLU MET GLY LYS THR SEQRES 6 A 332 LEU THR ILE ALA ALA PRO GLY ALA ALA SER MET GLN LEU SEQRES 7 A 332 ALA GLU ASN ALA LEU LYS GLU ILE GLN ALA MET GLY PRO SEQRES 8 A 332 LEU GLN GLN THR GLN ALA MET CYS ASP LEU ALA ASN ARG SEQRES 9 A 332 ALA ASP THR PRO LEU CYS ARG THR TYR ALA SER TRP SER SEQRES 10 A 332 PRO ASN ILE LYS LEU GLY PHE TRP TYR ARG LEU GLY GLU SEQRES 11 A 332 LEU MET GLU GLN GLY PHE VAL ALA PRO ILE PRO ALA GLY SEQRES 12 A 332 TYR GLN LEU SER ALA ASN ALA ASN ALA VAL LEU ALA THR SEQRES 13 A 332 ILE GLN GLY LEU GLU SER GLY GLN GLN ILE THR VAL LEU SEQRES 14 A 332 ARG ASN ALA VAL VAL ASP MET GLY PHE THR ALA GLY LYS SEQRES 15 A 332 ASP GLY LYS ARG ILE ALA GLU PRO VAL VAL PRO PRO GLN SEQRES 16 A 332 ASP THR ALA SER ARG THR LYS VAL SER ILE GLU GLY VAL SEQRES 17 A 332 THR ASN ALA THR VAL LEU ASN TRP MET ASP ASN LEU ASN SEQRES 18 A 332 ALA ASN ASP PHE ASP THR LEU ILE GLU LEU PHE THR SER SEQRES 19 A 332 ASP GLY ALA LEU GLN PRO PRO PHE GLN ARG PRO ILE VAL SEQRES 20 A 332 GLY LYS GLU ASN VAL LEU ARG PHE PHE ARG GLU GLU CYS SEQRES 21 A 332 GLN ASN LEU LYS LEU ILE PRO GLU ARG GLY VAL THR GLU SEQRES 22 A 332 PRO ALA GLU ASP GLY PHE THR GLN ILE LYS VAL THR GLY SEQRES 23 A 332 LYS VAL GLN THR PRO TRP PHE GLY GLY ASN VAL GLY MET SEQRES 24 A 332 ASN ILE ALA TRP ARG PHE LEU LEU ASN PRO GLU GLY LYS SEQRES 25 A 332 ILE PHE PHE VAL ALA ILE ASP LEU LEU ALA SER PRO LYS SEQRES 26 A 332 GLU LEU LEU ASN PHE ALA ARG HET ECH A 401 41 HET GOL A 402 6 HET HIS A 403 10 HETNAM ECH BETA,BETA-CAROTEN-4-ONE HETNAM GOL GLYCEROL HETNAM HIS HISTIDINE HETSYN ECH ECHINENONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ECH C40 H54 O FORMUL 3 GOL C3 H8 O3 FORMUL 4 HIS C6 H10 N3 O2 1+ FORMUL 5 HOH *337(H2 O) HELIX 1 AA1 THR A 4 ARG A 9 1 6 HELIX 2 AA2 ASP A 19 GLN A 30 1 12 HELIX 3 AA3 ASN A 32 GLY A 48 1 17 HELIX 4 AA4 GLY A 57 MET A 74 1 18 HELIX 5 AA5 GLY A 75 ARG A 89 1 15 HELIX 6 AA6 THR A 92 SER A 100 1 9 HELIX 7 AA7 SER A 102 GLN A 119 1 18 HELIX 8 AA8 SER A 132 LEU A 145 1 14 HELIX 9 AA9 GLU A 146 ASP A 160 1 15 HELIX 10 AB1 ASP A 181 ARG A 185 5 5 HELIX 11 AB2 ASN A 195 ALA A 207 1 13 HELIX 12 AB3 ASP A 209 GLU A 215 1 7 HELIX 13 AB4 GLY A 233 CYS A 245 1 13 HELIX 14 AB5 GLU A 261 GLY A 263 5 3 HELIX 15 AB6 PHE A 278 VAL A 282 5 5 HELIX 16 AB7 SER A 308 LEU A 312 5 5 SHEET 1 AA1 6 ILE A 231 VAL A 232 0 SHEET 2 AA1 6 PHE A 217 GLN A 224 -1 N LEU A 223 O ILE A 231 SHEET 3 AA1 6 ILE A 298 LEU A 305 1 O ILE A 303 N GLN A 224 SHEET 4 AA1 6 MET A 284 LEU A 292 -1 N LEU A 291 O PHE A 300 SHEET 5 AA1 6 THR A 265 GLN A 274 -1 N ILE A 267 O PHE A 290 SHEET 6 AA1 6 LYS A 249 PRO A 259 -1 N ILE A 251 O LYS A 272 SITE 1 AC1 19 ILE A 40 TYR A 44 LEU A 107 TRP A 110 SITE 2 AC1 19 TYR A 111 GLY A 114 ILE A 151 THR A 152 SITE 3 AC1 19 ARG A 155 VAL A 158 TRP A 201 LEU A 205 SITE 4 AC1 19 LEU A 250 VAL A 273 THR A 275 TRP A 277 SITE 5 AC1 19 MET A 284 TRP A 288 ILE A 303 SITE 1 AC2 10 ALA A 55 PRO A 56 GLY A 57 GLU A 174 SITE 2 AC2 10 PRO A 276 TRP A 277 HOH A 556 HOH A 560 SITE 3 AC2 10 HOH A 638 HOH A 658 SITE 1 AC3 5 GLN A 119 GLY A 120 ASP A 211 ILE A 214 SITE 2 AC3 5 GLU A 215 CRYST1 83.149 83.149 87.488 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012027 0.006944 0.000000 0.00000 SCALE2 0.000000 0.013887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011430 0.00000