HEADER FLAVOPROTEIN 21-OCT-19 6T74 TITLE NEW ANTIPARALLEL DIMER OF AUREOCHROME 1A LOV DOMAIN MUTANTS FROM TITLE 2 PHAEODACTYLUM TRICORNUTUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTAUREO1A LOV2 DOMAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHAEODACTYLUM TRICORNUTUM; SOURCE 3 ORGANISM_COMMON: DIATOM; SOURCE 4 ORGANISM_TAXID: 2850; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOTORECEPTOR, INTERFACE, FLAVOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.O.ESSEN,S.HEPP REVDAT 4 24-JAN-24 6T74 1 LINK REVDAT 3 20-MAY-20 6T74 1 JRNL REVDAT 2 08-APR-20 6T74 1 JRNL REVDAT 1 18-MAR-20 6T74 0 JRNL AUTH S.HEPP,J.TRAUTH,S.HASENJAGER,F.BEZOLD,L.O.ESSEN,C.TAXIS JRNL TITL AN OPTOGENETIC TOOL FOR INDUCED PROTEIN STABILIZATION BASED JRNL TITL 2 ON THE PHAEODACTYLUM TRICORNUTUM AUREOCHROME 1A JRNL TITL 3 LIGHT-OXYGEN-VOLTAGE DOMAIN. JRNL REF J.MOL.BIOL. V. 432 1880 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 32105734 JRNL DOI 10.1016/J.JMB.2020.02.019 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 46990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3396 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 195 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2205 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 131 REMARK 3 SOLVENT ATOMS : 323 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : 1.79000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.052 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.589 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.969 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2445 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2130 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3324 ; 1.652 ; 1.699 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4969 ; 1.461 ; 1.639 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 6.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;32.033 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;13.108 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;18.595 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2765 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 503 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 236 374 B 236 374 4441 0.100 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 236 A 375 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1012 -30.9489 -15.7025 REMARK 3 T TENSOR REMARK 3 T11: 0.0228 T22: 0.1160 REMARK 3 T33: 0.0602 T12: 0.0117 REMARK 3 T13: 0.0201 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 2.9932 L22: 1.0702 REMARK 3 L33: 2.3127 L12: 0.3688 REMARK 3 L13: -0.6077 L23: -0.0494 REMARK 3 S TENSOR REMARK 3 S11: -0.0659 S12: -0.2373 S13: -0.2072 REMARK 3 S21: 0.0261 S22: 0.0361 S23: 0.0038 REMARK 3 S31: 0.1762 S32: -0.1335 S33: 0.0299 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 236 B 376 REMARK 3 ORIGIN FOR THE GROUP (A): -15.4285 -30.1349 -18.1790 REMARK 3 T TENSOR REMARK 3 T11: 0.0270 T22: 0.1666 REMARK 3 T33: 0.0434 T12: -0.0195 REMARK 3 T13: 0.0192 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.2067 L22: 1.7227 REMARK 3 L33: 1.6716 L12: -0.6631 REMARK 3 L13: -0.1187 L23: -0.2174 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: 0.4354 S13: -0.1204 REMARK 3 S21: -0.1002 S22: -0.0204 S23: -0.0268 REMARK 3 S31: 0.1515 S32: 0.0932 S33: 0.0881 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6T74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49476 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 46.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01232 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.29190 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5A8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IN 1.1 M SODIUM MALONATE, 0.1 M HEPES REMARK 280 PH 7.0, 0.5 % JEFFAMINE ED-2003 UNDER DARK CONDITIONS, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.28500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.37300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.37300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.14250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.37300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.37300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 90.42750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.37300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.37300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 30.14250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.37300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.37300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.42750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.28500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 583 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 217 REMARK 465 GLY A 218 REMARK 465 SER A 219 REMARK 465 SER A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 HIS A 223 REMARK 465 HIS A 224 REMARK 465 HIS A 225 REMARK 465 HIS A 226 REMARK 465 SER A 227 REMARK 465 SER A 228 REMARK 465 GLY A 229 REMARK 465 LEU A 230 REMARK 465 VAL A 231 REMARK 465 PRO A 232 REMARK 465 ARG A 233 REMARK 465 GLY A 234 REMARK 465 SER A 235 REMARK 465 ASP A 376 REMARK 465 GLU A 377 REMARK 465 ASP A 378 REMARK 465 MET B 217 REMARK 465 GLY B 218 REMARK 465 SER B 219 REMARK 465 SER B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 HIS B 225 REMARK 465 HIS B 226 REMARK 465 SER B 227 REMARK 465 SER B 228 REMARK 465 GLY B 229 REMARK 465 LEU B 230 REMARK 465 VAL B 231 REMARK 465 PRO B 232 REMARK 465 ARG B 233 REMARK 465 GLY B 234 REMARK 465 SER B 235 REMARK 465 GLU B 377 REMARK 465 ASP B 378 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 363 CD CE NZ REMARK 470 ASP A 375 CG OD1 OD2 REMARK 470 ASP B 376 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 589 O HOH A 652 1.84 REMARK 500 O HOH B 509 O HOH B 626 1.84 REMARK 500 O HOH B 616 O HOH B 620 1.98 REMARK 500 O HOH B 604 O HOH B 645 2.08 REMARK 500 O HOH B 574 O HOH B 620 2.09 REMARK 500 OE1 GLN B 364 O HOH B 501 2.13 REMARK 500 O HOH B 565 O HOH B 643 2.13 REMARK 500 O HOH B 611 O HOH B 636 2.17 REMARK 500 NH1 ARG B 304 O2P FMN B 401 2.18 REMARK 500 O HOH A 558 O HOH A 591 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 503 O HOH B 613 6544 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 304 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 285 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 304 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 375 -69.96 -97.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS B 236 MET B 237 -147.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 289 O REMARK 620 2 GLN A 291 O 93.9 REMARK 620 3 HOH A 622 O 89.4 158.1 REMARK 620 4 HOH A 623 O 114.5 79.0 79.9 REMARK 620 5 HOH B 539 O 103.2 109.8 90.4 140.8 REMARK 620 6 HOH B 557 O 175.6 81.7 94.7 64.9 78.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 524 O REMARK 620 2 HOH B 539 O 170.6 REMARK 620 3 HOH B 582 O 107.4 77.3 REMARK 620 4 HOH B 599 O 69.4 110.6 150.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 DBREF1 6T74 A 237 378 UNP A0A140UHJ0_PHATR DBREF2 6T74 A A0A140UHJ0 1 142 DBREF1 6T74 B 237 378 UNP A0A140UHJ0_PHATR DBREF2 6T74 B A0A140UHJ0 1 142 SEQADV 6T74 MET A 217 UNP A0A140UHJ INITIATING METHIONINE SEQADV 6T74 GLY A 218 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER A 219 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER A 220 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS A 221 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS A 222 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS A 223 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS A 224 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS A 225 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS A 226 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER A 227 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER A 228 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 GLY A 229 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 LEU A 230 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 VAL A 231 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 PRO A 232 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 ARG A 233 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 GLY A 234 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER A 235 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS A 236 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 TRP A 349 UNP A0A140UHJ VAL 113 CONFLICT SEQADV 6T74 MET B 217 UNP A0A140UHJ INITIATING METHIONINE SEQADV 6T74 GLY B 218 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER B 219 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER B 220 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS B 221 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS B 222 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS B 223 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS B 224 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS B 225 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS B 226 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER B 227 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER B 228 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 GLY B 229 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 LEU B 230 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 VAL B 231 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 PRO B 232 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 ARG B 233 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 GLY B 234 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 SER B 235 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 HIS B 236 UNP A0A140UHJ EXPRESSION TAG SEQADV 6T74 TRP B 349 UNP A0A140UHJ VAL 113 CONFLICT SEQRES 1 A 162 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 162 LEU VAL PRO ARG GLY SER HIS MET ASP PHE SER PHE ILE SEQRES 3 A 162 LYS ALA LEU GLN THR ALA GLN GLN ASN PHE VAL VAL THR SEQRES 4 A 162 ASP PRO SER LEU PRO ASP ASN PRO ILE VAL TYR ALA SER SEQRES 5 A 162 GLN GLY PHE LEU ASN LEU THR GLY TYR SER LEU ASP GLN SEQRES 6 A 162 ILE LEU GLY ARG ASN CYS ARG PHE LEU GLN GLY PRO GLU SEQRES 7 A 162 THR ASP PRO LYS ALA VAL GLU ARG ILE ARG LYS ALA ILE SEQRES 8 A 162 GLU GLN GLY ASN ASP MET SER VAL CYS LEU LEU ASN TYR SEQRES 9 A 162 ARG VAL ASP GLY THR THR PHE TRP ASN GLN PHE PHE ILE SEQRES 10 A 162 ALA ALA LEU ARG ASP ALA GLY GLY ASN VAL THR ASN PHE SEQRES 11 A 162 VAL GLY TRP GLN CYS LYS VAL SER ASP GLN TYR ALA ALA SEQRES 12 A 162 THR VAL THR LYS GLN GLN GLU GLU GLU GLU GLU ALA ALA SEQRES 13 A 162 ALA ASN ASP ASP GLU ASP SEQRES 1 B 162 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 162 LEU VAL PRO ARG GLY SER HIS MET ASP PHE SER PHE ILE SEQRES 3 B 162 LYS ALA LEU GLN THR ALA GLN GLN ASN PHE VAL VAL THR SEQRES 4 B 162 ASP PRO SER LEU PRO ASP ASN PRO ILE VAL TYR ALA SER SEQRES 5 B 162 GLN GLY PHE LEU ASN LEU THR GLY TYR SER LEU ASP GLN SEQRES 6 B 162 ILE LEU GLY ARG ASN CYS ARG PHE LEU GLN GLY PRO GLU SEQRES 7 B 162 THR ASP PRO LYS ALA VAL GLU ARG ILE ARG LYS ALA ILE SEQRES 8 B 162 GLU GLN GLY ASN ASP MET SER VAL CYS LEU LEU ASN TYR SEQRES 9 B 162 ARG VAL ASP GLY THR THR PHE TRP ASN GLN PHE PHE ILE SEQRES 10 B 162 ALA ALA LEU ARG ASP ALA GLY GLY ASN VAL THR ASN PHE SEQRES 11 B 162 VAL GLY TRP GLN CYS LYS VAL SER ASP GLN TYR ALA ALA SEQRES 12 B 162 THR VAL THR LYS GLN GLN GLU GLU GLU GLU GLU ALA ALA SEQRES 13 B 162 ALA ASN ASP ASP GLU ASP HET FMN A 401 31 HET 1PE A 402 16 HET NA A 403 1 HET 1PE A 404 16 HET GOL A 405 6 HET FMN B 401 31 HET 1PE B 402 16 HET NA B 403 1 HET MLI B 404 7 HET GOL B 405 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETNAM MLI MALONATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 1PE 3(C10 H22 O6) FORMUL 5 NA 2(NA 1+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 MLI C3 H2 O4 2- FORMUL 13 HOH *323(H2 O) HELIX 1 AA1 ASP A 238 ALA A 248 1 11 HELIX 2 AA2 SER A 268 GLY A 276 1 9 HELIX 3 AA3 SER A 278 LEU A 283 1 6 HELIX 4 AA4 ASN A 286 GLN A 291 5 6 HELIX 5 AA5 ASP A 296 GLY A 310 1 15 HELIX 6 AA6 SER A 354 ASN A 374 1 21 HELIX 7 AA7 PHE B 239 ALA B 248 1 10 HELIX 8 AA8 SER B 268 GLY B 276 1 9 HELIX 9 AA9 SER B 278 LEU B 283 1 6 HELIX 10 AB1 ASN B 286 GLN B 291 5 6 HELIX 11 AB2 ASP B 296 GLY B 310 1 15 HELIX 12 AB3 SER B 354 ASN B 374 1 21 SHEET 1 AA1 5 ILE A 264 ALA A 267 0 SHEET 2 AA1 5 PHE A 252 THR A 255 -1 N VAL A 254 O VAL A 265 SHEET 3 AA1 5 VAL A 343 VAL A 353 -1 O PHE A 346 N THR A 255 SHEET 4 AA1 5 THR A 326 ARG A 337 -1 N GLN A 330 O CYS A 351 SHEET 5 AA1 5 MET A 313 TYR A 320 -1 N VAL A 315 O PHE A 331 SHEET 1 AA2 5 ILE B 264 ALA B 267 0 SHEET 2 AA2 5 PHE B 252 THR B 255 -1 N VAL B 254 O VAL B 265 SHEET 3 AA2 5 VAL B 343 VAL B 353 -1 O PHE B 346 N THR B 255 SHEET 4 AA2 5 THR B 326 ARG B 337 -1 N GLN B 330 O CYS B 351 SHEET 5 AA2 5 MET B 313 TYR B 320 -1 N LEU B 317 O ASN B 329 LINK O PHE A 289 NA NA A 403 1555 1555 2.41 LINK O GLN A 291 NA NA A 403 1555 1555 2.58 LINK NA NA A 403 O HOH A 622 1555 1555 2.25 LINK NA NA A 403 O HOH A 623 1555 1555 2.60 LINK NA NA A 403 O HOH B 539 1555 6544 2.68 LINK NA NA A 403 O HOH B 557 1555 6544 2.24 LINK NA NA B 403 O HOH B 524 1555 1555 2.63 LINK NA NA B 403 O HOH B 539 1555 1555 2.63 LINK NA NA B 403 O HOH B 582 1555 1555 2.43 LINK NA NA B 403 O HOH B 599 1555 1555 2.17 SITE 1 AC1 22 THR A 255 ASN A 262 ASN A 286 CYS A 287 SITE 2 AC1 22 ARG A 288 LEU A 290 GLN A 291 VAL A 300 SITE 3 AC1 22 ARG A 304 ILE A 307 LEU A 317 ASN A 319 SITE 4 AC1 22 ASN A 329 PHE A 331 GLY A 348 GLN A 350 SITE 5 AC1 22 HOH A 512 HOH A 547 HOH A 553 HOH A 556 SITE 6 AC1 22 HOH A 573 HOH A 597 SITE 1 AC2 8 GLU A 294 THR A 326 PHE A 327 TRP A 328 SITE 2 AC2 8 LYS A 352 VAL A 353 ASP A 355 HOH A 581 SITE 1 AC3 6 PHE A 289 GLN A 291 HOH A 622 HOH A 623 SITE 2 AC3 6 HOH B 539 HOH B 557 SITE 1 AC4 3 TYR A 266 ALA A 267 HOH A 506 SITE 1 AC5 6 ASP A 296 ARG A 302 GLN A 365 GLU A 369 SITE 2 AC5 6 HOH A 505 HOH A 522 SITE 1 AC6 23 THR B 255 ASN B 262 ASN B 286 CYS B 287 SITE 2 AC6 23 ARG B 288 LEU B 290 GLN B 291 VAL B 300 SITE 3 AC6 23 ARG B 304 ILE B 307 LEU B 317 ASN B 319 SITE 4 AC6 23 ASN B 329 PHE B 331 PHE B 346 GLY B 348 SITE 5 AC6 23 GLN B 350 HOH B 517 HOH B 521 HOH B 548 SITE 6 AC6 23 HOH B 556 HOH B 560 HOH B 575 SITE 1 AC7 7 GLU B 294 THR B 326 PHE B 327 TRP B 328 SITE 2 AC7 7 LYS B 352 VAL B 353 ASP B 355 SITE 1 AC8 5 TYR B 277 HOH B 524 HOH B 539 HOH B 582 SITE 2 AC8 5 HOH B 599 SITE 1 AC9 5 ASP A 280 ASP B 280 GLN B 281 ARG B 285 SITE 2 AC9 5 HOH B 564 SITE 1 AD1 7 TYR A 277 GLN A 281 ARG A 285 PHE A 289 SITE 2 AD1 7 GLN B 281 HOH B 551 HOH B 582 CRYST1 100.746 100.746 120.570 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009926 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008294 0.00000