HEADER BIOSYNTHETIC PROTEIN 21-OCT-19 6T77 TITLE CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE FABG(NADPH-DEPENDENT) NADP- TITLE 2 COMPLEX AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-OXOACYL-ACP REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-OXOACYL-ACP REDUCTASE FABG,3-OXOACYL-[ACYL-CARRIER- COMPND 5 PROTEIN] REDUCTASE,3-OXOACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE FABG, COMPND 6 BETA-KETOACYL-ACP REDUCTASE,FABG PROTEIN; COMPND 7 EC: 1.1.1.100; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: THE PROTEIN WAS EXPRESSED IN E.COLI WITH N-TERMINAL COMPND 10 HIS6-TAG (REMOVABLE BY TEV PROTEASE CLEAVAGE). THE TAG REMOVAL COMPND 11 RESULTS IN A PROTEIN WITH ONE EXTRA SERINE RESIDUE AT THE N-TERMINUS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: FABG, FABG_1, FABG_10, FABG_11, FABG_13, FABG_17, FABG_2, SOURCE 5 FABG_20, FABG_29, FABG_3, FABG_5, FABG_6, FABG_7, FABG_9, SOURCE 6 B4U21_08660, B4U25_10170, B4U30_10945, BANRA_00187, BANRA_00827, SOURCE 7 BL124_00014385, BN49_2178, BU230_37105, BVX91_09955, C1459_07275, SOURCE 8 C3483_16280, C3F39_04320, C4Y50_026525, C7V41_16750, C8P71_1985, SOURCE 9 CSC88_11955, CWN54_18865, DD581_15755, DD583_12070, DM059_09455, SOURCE 10 DN589_06290, DXF97_11560, E0760_18120, EAO17_24465, EXT45_09615, SOURCE 11 FAQ72_04165, FAQ97_22680, FAS39_22705, NCTC11679_03520, SOURCE 12 NCTC13465_02289, NCTC13635_06738, NCTC1936_03302, NCTC204_06212, SOURCE 13 NCTC5052_01093, NCTC8849_02353, NCTC9128_07518, NCTC9178_04075, SOURCE 14 NCTC9617_01456, NCTC9637_04333, NCTC9645_00460, PMK1_03430, SOURCE 15 SAMEA104305404_12205, SAMEA104567806_03967, SAMEA104567857_00497, SOURCE 16 SAMEA104567903_00037, SAMEA23986918_09908, SAMEA3531848_01000, SOURCE 17 SAMEA4364603_00036, SAMEA4394730_07307, SAMEA4873640_04565, SOURCE 18 SK89_00756, SM87_01800; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 21 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 22 EXPRESSION_SYSTEM_PLASMID: PNIC28BSA4 KEYWDS FATTY ACID BIOSYNTHESIS, FABG, (3-OXOACYL-(ACYL-CARRIER-PROTEIN) KEYWDS 2 REDUCTASE), NADPH, COMPLEX, FAS-II, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.VELLA,R.SCHNELL,Y.LINDQVIST,G.SCHNEIDER REVDAT 3 24-JAN-24 6T77 1 REMARK REVDAT 2 02-JUN-21 6T77 1 JRNL REMARK REVDAT 1 18-NOV-20 6T77 0 JRNL AUTH P.VELLA,R.S.RUDRARAJU,T.LUNDBACK,H.AXELSSON,H.ALMQVIST, JRNL AUTH 2 M.VALLIN,G.SCHNEIDER,R.SCHNELL JRNL TITL A FABG INHIBITOR TARGETING AN ALLOSTERIC BINDING SITE JRNL TITL 2 INHIBITS SEVERAL ORTHOLOGS FROM GRAM-NEGATIVE ESKAPE JRNL TITL 3 PATHOGENS. JRNL REF BIOORG.MED.CHEM. V. 30 15898 2021 JRNL REFN ESSN 1464-3391 JRNL PMID 33388594 JRNL DOI 10.1016/J.BMC.2020.115898 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 45483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2449 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3418 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.06 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3568 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 217 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.40000 REMARK 3 B22 (A**2) : -1.82000 REMARK 3 B33 (A**2) : -0.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.103 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3753 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3586 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5093 ; 1.853 ; 1.988 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8270 ; 3.738 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 504 ; 5.703 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 141 ;35.331 ;23.688 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 640 ;13.766 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;15.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 602 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4221 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 753 ; 0.013 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 244 B 1 244 14464 0.070 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 244 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -13.092 -20.117 -21.440 REMARK 3 T TENSOR REMARK 3 T11: 0.1164 T22: 0.0818 REMARK 3 T33: 0.1082 T12: -0.0459 REMARK 3 T13: -0.0597 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.3826 L22: 1.2697 REMARK 3 L33: 1.1045 L12: 0.3472 REMARK 3 L13: -0.3160 L23: 0.1922 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: 0.0102 S13: 0.0534 REMARK 3 S21: 0.2015 S22: -0.0084 S23: 0.0731 REMARK 3 S31: 0.1939 S32: -0.1817 S33: -0.0332 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 244 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -8.758 10.155 -16.890 REMARK 3 T TENSOR REMARK 3 T11: 0.0941 T22: 0.0513 REMARK 3 T33: 0.0448 T12: 0.0276 REMARK 3 T13: 0.0283 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 0.8461 L22: 1.5185 REMARK 3 L33: 1.0391 L12: 0.6005 REMARK 3 L13: 0.0926 L23: -0.1187 REMARK 3 S TENSOR REMARK 3 S11: 0.0955 S12: -0.1184 S13: 0.1578 REMARK 3 S21: 0.3216 S22: -0.0151 S23: 0.1541 REMARK 3 S31: -0.1331 S32: -0.0770 S33: -0.0805 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6T77 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104970. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : TOROIDAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47966 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 59.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1Q7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9.5 MG/ML PROTEIN SOLUTION MIXED WITH REMARK 280 NADP+ AT 11.5 MM CONCENTRATION WELL SOLUTION: 0.1 M PHOSPHATE- REMARK 280 CITRATE 4.2 PH 40 %V/V PEG 300, PH 4.2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.87950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.87950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.36150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.42100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.36150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.42100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.87950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.36150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.42100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.87950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.36150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.42100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -59.87950 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 SER B 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 233 CD GLU A 233 OE1 0.078 REMARK 500 GLU B 233 CD GLU B 233 OE1 0.080 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 93 144.77 -173.70 REMARK 500 ASN A 238 16.92 -146.88 REMARK 500 ASN B 93 147.31 -175.08 REMARK 500 ASN B 238 15.35 -148.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAP A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 301 DBREF 6T77 A 1 244 UNP W9B6I8 W9B6I8_KLEPN 1 244 DBREF 6T77 B 1 244 UNP W9B6I8 W9B6I8_KLEPN 1 244 SEQADV 6T77 SER A 0 UNP W9B6I8 EXPRESSION TAG SEQADV 6T77 SER B 0 UNP W9B6I8 EXPRESSION TAG SEQRES 1 A 245 SER MET SER PHE GLU GLY LYS ILE ALA LEU VAL THR GLY SEQRES 2 A 245 ALA SER ARG GLY ILE GLY ARG ALA ILE ALA GLU THR LEU SEQRES 3 A 245 VAL ALA ARG GLY ALA LYS VAL ILE GLY THR ALA THR SER SEQRES 4 A 245 GLU SER GLY ALA GLN ALA ILE SER ASP TYR LEU GLY ALA SEQRES 5 A 245 ASN GLY LYS GLY LEU MET LEU ASN VAL THR ASP PRO ALA SEQRES 6 A 245 SER ILE GLU SER VAL LEU GLU ASN VAL ARG ALA GLU PHE SEQRES 7 A 245 GLY GLU VAL ASP ILE LEU VAL ASN ASN ALA GLY ILE THR SEQRES 8 A 245 ARG ASP ASN LEU LEU MET ARG MET LYS ASP ASP GLU TRP SEQRES 9 A 245 ASN ASP ILE ILE GLU THR ASN LEU SER SER VAL PHE ARG SEQRES 10 A 245 LEU SER LYS ALA VAL MET ARG ALA MET MET LYS LYS ARG SEQRES 11 A 245 HIS GLY ARG ILE ILE THR ILE GLY SER VAL VAL GLY THR SEQRES 12 A 245 MET GLY ASN ALA GLY GLN ALA ASN TYR ALA ALA ALA LYS SEQRES 13 A 245 ALA GLY LEU ILE GLY PHE SER LYS SER LEU ALA ARG GLU SEQRES 14 A 245 VAL ALA SER ARG GLY ILE THR VAL ASN VAL VAL ALA PRO SEQRES 15 A 245 GLY PHE ILE GLU THR ASP MET THR ARG ALA LEU THR ASP SEQRES 16 A 245 GLU GLN ARG ALA GLY THR LEU ALA ALA VAL PRO ALA GLY SEQRES 17 A 245 ARG LEU GLY THR PRO ASN GLU ILE ALA SER ALA VAL ALA SEQRES 18 A 245 PHE LEU ALA SER ASP GLU ALA SER TYR ILE THR GLY GLU SEQRES 19 A 245 THR LEU HIS VAL ASN GLY GLY MET TYR MET VAL SEQRES 1 B 245 SER MET SER PHE GLU GLY LYS ILE ALA LEU VAL THR GLY SEQRES 2 B 245 ALA SER ARG GLY ILE GLY ARG ALA ILE ALA GLU THR LEU SEQRES 3 B 245 VAL ALA ARG GLY ALA LYS VAL ILE GLY THR ALA THR SER SEQRES 4 B 245 GLU SER GLY ALA GLN ALA ILE SER ASP TYR LEU GLY ALA SEQRES 5 B 245 ASN GLY LYS GLY LEU MET LEU ASN VAL THR ASP PRO ALA SEQRES 6 B 245 SER ILE GLU SER VAL LEU GLU ASN VAL ARG ALA GLU PHE SEQRES 7 B 245 GLY GLU VAL ASP ILE LEU VAL ASN ASN ALA GLY ILE THR SEQRES 8 B 245 ARG ASP ASN LEU LEU MET ARG MET LYS ASP ASP GLU TRP SEQRES 9 B 245 ASN ASP ILE ILE GLU THR ASN LEU SER SER VAL PHE ARG SEQRES 10 B 245 LEU SER LYS ALA VAL MET ARG ALA MET MET LYS LYS ARG SEQRES 11 B 245 HIS GLY ARG ILE ILE THR ILE GLY SER VAL VAL GLY THR SEQRES 12 B 245 MET GLY ASN ALA GLY GLN ALA ASN TYR ALA ALA ALA LYS SEQRES 13 B 245 ALA GLY LEU ILE GLY PHE SER LYS SER LEU ALA ARG GLU SEQRES 14 B 245 VAL ALA SER ARG GLY ILE THR VAL ASN VAL VAL ALA PRO SEQRES 15 B 245 GLY PHE ILE GLU THR ASP MET THR ARG ALA LEU THR ASP SEQRES 16 B 245 GLU GLN ARG ALA GLY THR LEU ALA ALA VAL PRO ALA GLY SEQRES 17 B 245 ARG LEU GLY THR PRO ASN GLU ILE ALA SER ALA VAL ALA SEQRES 18 B 245 PHE LEU ALA SER ASP GLU ALA SER TYR ILE THR GLY GLU SEQRES 19 B 245 THR LEU HIS VAL ASN GLY GLY MET TYR MET VAL HET NAP A 301 27 HET NAP B 301 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *217(H2 O) HELIX 1 AA1 ARG A 15 ARG A 28 1 14 HELIX 2 AA2 SER A 38 GLY A 50 1 13 HELIX 3 AA3 ASP A 62 PHE A 77 1 16 HELIX 4 AA4 LEU A 94 MET A 98 5 5 HELIX 5 AA5 LYS A 99 LEU A 111 1 13 HELIX 6 AA6 LEU A 111 ARG A 129 1 19 HELIX 7 AA7 SER A 138 GLY A 144 1 7 HELIX 8 AA8 GLN A 148 ALA A 170 1 23 HELIX 9 AA9 THR A 186 ALA A 191 1 6 HELIX 10 AB1 THR A 193 ALA A 203 1 11 HELIX 11 AB2 THR A 211 SER A 224 1 14 HELIX 12 AB3 ASP A 225 SER A 228 5 4 HELIX 13 AB4 ARG B 15 ARG B 28 1 14 HELIX 14 AB5 SER B 38 GLY B 50 1 13 HELIX 15 AB6 ASP B 62 PHE B 77 1 16 HELIX 16 AB7 LEU B 94 MET B 98 5 5 HELIX 17 AB8 LYS B 99 LEU B 111 1 13 HELIX 18 AB9 LEU B 111 ARG B 129 1 19 HELIX 19 AC1 SER B 138 GLY B 144 1 7 HELIX 20 AC2 GLN B 148 ALA B 170 1 23 HELIX 21 AC3 THR B 186 ALA B 191 1 6 HELIX 22 AC4 THR B 193 ALA B 203 1 11 HELIX 23 AC5 THR B 211 SER B 224 1 14 HELIX 24 AC6 ASP B 225 SER B 228 5 4 SHEET 1 AA1 7 GLY A 53 MET A 57 0 SHEET 2 AA1 7 LYS A 31 ALA A 36 1 N GLY A 34 O LYS A 54 SHEET 3 AA1 7 ILE A 7 VAL A 10 1 N VAL A 10 O ILE A 33 SHEET 4 AA1 7 ILE A 82 ASN A 85 1 O VAL A 84 N LEU A 9 SHEET 5 AA1 7 GLY A 131 ILE A 136 1 O ILE A 136 N ASN A 85 SHEET 6 AA1 7 ILE A 174 PRO A 181 1 O ASN A 177 N THR A 135 SHEET 7 AA1 7 THR A 234 VAL A 237 1 O LEU A 235 N ALA A 180 SHEET 1 AA2 7 GLY B 53 MET B 57 0 SHEET 2 AA2 7 LYS B 31 ALA B 36 1 N GLY B 34 O LYS B 54 SHEET 3 AA2 7 ILE B 7 THR B 11 1 N ALA B 8 O ILE B 33 SHEET 4 AA2 7 ILE B 82 ASN B 85 1 O VAL B 84 N LEU B 9 SHEET 5 AA2 7 GLY B 131 ILE B 136 1 O ARG B 132 N LEU B 83 SHEET 6 AA2 7 ILE B 174 PRO B 181 1 O THR B 175 N ILE B 133 SHEET 7 AA2 7 THR B 234 VAL B 237 1 O LEU B 235 N ALA B 180 SITE 1 AC1 16 GLY A 12 SER A 14 ARG A 15 THR A 37 SITE 2 AC1 16 LEU A 58 ASN A 59 VAL A 60 ALA A 87 SITE 3 AC1 16 GLY A 88 ILE A 89 HOH A 406 HOH A 411 SITE 4 AC1 16 HOH A 434 HOH A 459 HOH A 489 HOH A 490 SITE 1 AC2 27 GLY B 12 SER B 14 ARG B 15 ALA B 36 SITE 2 AC2 27 THR B 37 LEU B 58 ASN B 59 VAL B 60 SITE 3 AC2 27 ASN B 86 ALA B 87 GLY B 88 ILE B 89 SITE 4 AC2 27 LYS B 99 ILE B 136 GLY B 137 TYR B 151 SITE 5 AC2 27 LYS B 155 PRO B 181 GLY B 182 ILE B 184 SITE 6 AC2 27 HOH B 402 HOH B 407 HOH B 430 HOH B 439 SITE 7 AC2 27 HOH B 456 HOH B 458 HOH B 485 CRYST1 68.723 118.842 119.759 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014551 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008350 0.00000