HEADER REPLICATION 23-OCT-19 6T7Y TITLE STRUCTURE OF PCNA BOUND TO CPIP MOTIF OF DP2 FROM P. ABYSSI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE SLIDING CLAMP; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROLIFERATING CELL NUCLEAR ANTIGEN HOMOLOG,PCNA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CPIP MOTIF FROM THE DP2 LARGE SUBUNIT OF POLD; COMPND 8 CHAIN: B; COMPND 9 EC: 2.7.7.7; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI (STRAIN GE5 / ORSAY); SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: PCN, PYRAB13790, PAB1465; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 10 ORGANISM_TAXID: 29292; SOURCE 11 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS PCNA, DP2, POLD, PIP-BOX, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR C.MADRU,P.RAIA,I.HUGONNEAU BEAUFET,M.DELARUE,M.CARRONI,L.SAUGUET REVDAT 4 24-JAN-24 6T7Y 1 REMARK REVDAT 3 08-APR-20 6T7Y 1 JRNL REVDAT 2 01-APR-20 6T7Y 1 JRNL REVDAT 1 04-MAR-20 6T7Y 0 JRNL AUTH C.MADRU,G.HENNEKE,P.RAIA,I.HUGONNEAU-BEAUFET, JRNL AUTH 2 G.PEHAU-ARNAUDET,P.ENGLAND,E.LINDAHL,M.DELARUE,M.CARRONI, JRNL AUTH 3 L.SAUGUET JRNL TITL STRUCTURAL BASIS FOR THE INCREASED PROCESSIVITY OF D-FAMILY JRNL TITL 2 DNA POLYMERASES IN COMPLEX WITH PCNA. JRNL REF NAT COMMUN V. 11 1591 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32221299 JRNL DOI 10.1038/S41467-020-15392-9 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.4 REMARK 3 NUMBER OF REFLECTIONS : 6323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.500 REMARK 3 FREE R VALUE TEST SET COUNT : 660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 49 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 10.05 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1952 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 134.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.54000 REMARK 3 B22 (A**2) : 0.54000 REMARK 3 B33 (A**2) : -1.76000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.424 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.427 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 50.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1975 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1952 ; 0.007 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2650 ; 2.138 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4533 ; 1.180 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 7.593 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;37.635 ;25.287 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;19.585 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.677 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 310 ; 0.128 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2134 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 369 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -3.4653 -24.4055 -10.7278 REMARK 3 T TENSOR REMARK 3 T11: 0.1802 T22: 0.0394 REMARK 3 T33: 0.0950 T12: -0.0631 REMARK 3 T13: -0.0046 T23: 0.0245 REMARK 3 L TENSOR REMARK 3 L11: 4.9011 L22: 0.8941 REMARK 3 L33: 0.0111 L12: -1.0620 REMARK 3 L13: 0.0850 L23: -0.0112 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: -0.2556 S13: -0.2717 REMARK 3 S21: 0.1025 S22: -0.0337 S23: 0.0189 REMARK 3 S31: 0.0410 S32: -0.0165 S33: -0.0009 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1256 B 1264 REMARK 3 ORIGIN FOR THE GROUP (A): 6.6259 -33.9656 -26.4644 REMARK 3 T TENSOR REMARK 3 T11: 0.1311 T22: 0.1844 REMARK 3 T33: 0.1272 T12: -0.0292 REMARK 3 T13: 0.0125 T23: -0.0734 REMARK 3 L TENSOR REMARK 3 L11: 10.3805 L22: 1.5922 REMARK 3 L33: 4.8518 L12: 1.9453 REMARK 3 L13: -4.1505 L23: -2.7570 REMARK 3 S TENSOR REMARK 3 S11: 0.4728 S12: 1.0612 S13: -0.1003 REMARK 3 S21: 0.0252 S22: 0.0853 S23: 0.3550 REMARK 3 S31: -0.0741 S32: -0.2512 S33: -0.5581 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6T7Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1292104985. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6983 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 70.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.5 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.86 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5AUJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 400 0.2 M MGCL2 0.1M BIS-TRIS REMARK 280 PH7.1, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.36800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.62698 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 12.84033 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.36800 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.62698 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 12.84033 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.36800 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.62698 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.84033 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.25397 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 25.68067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 81.25397 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 25.68067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 81.25397 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 25.68067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 120 REMARK 465 ILE A 121 REMARK 465 GLU A 122 REMARK 465 VAL A 123 REMARK 465 ASP A 124 REMARK 465 LEU A 125 REMARK 465 PRO A 126 REMARK 465 GLU A 127 REMARK 465 GLU A 248 REMARK 465 GLU A 249 REMARK 465 LYS B 1255 REMARK 465 PHE B 1265 REMARK 465 SER B 1266 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 19 -77.71 -46.35 REMARK 500 ALA A 20 -32.26 -37.62 REMARK 500 ALA A 40 149.16 -177.61 REMARK 500 ALA A 55 -47.09 -25.60 REMARK 500 ASN A 97 78.43 -69.40 REMARK 500 GLU A 171 -78.58 -60.94 REMARK 500 GLU A 224 56.94 31.03 REMARK 500 ARG A 234 -125.99 59.37 REMARK 500 GLU B1263 34.88 -78.90 REMARK 500 REMARK 500 REMARK: NULL DBREF 6T7Y A 1 249 UNP Q9UYX8 PCNA_PYRAB 1 249 DBREF 6T7Y B 1255 1266 PDB 6T7Y 6T7Y 1255 1266 SEQADV 6T7Y MET A -11 UNP Q9UYX8 INITIATING METHIONINE SEQADV 6T7Y ARG A -10 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y GLY A -9 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y SER A -8 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y HIS A -7 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y HIS A -6 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y HIS A -5 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y HIS A -4 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y HIS A -3 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y HIS A -2 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y GLY A -1 UNP Q9UYX8 EXPRESSION TAG SEQADV 6T7Y SER A 0 UNP Q9UYX8 EXPRESSION TAG SEQRES 1 A 261 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 261 PRO PHE GLU ILE VAL PHE GLU GLY ALA LYS GLU PHE ALA SEQRES 3 A 261 GLN LEU ILE GLU THR ALA SER ARG LEU ILE ASP GLU ALA SEQRES 4 A 261 ALA PHE LYS VAL THR GLU GLU GLY ILE SER MET ARG ALA SEQRES 5 A 261 MET ASP PRO SER ARG VAL VAL LEU ILE ASP LEU ASN LEU SEQRES 6 A 261 PRO ALA SER ILE PHE SER LYS TYR GLU VAL ASP GLY GLU SEQRES 7 A 261 GLU THR ILE GLY VAL ASN MET ASP HIS LEU LYS LYS VAL SEQRES 8 A 261 LEU LYS ARG GLY LYS ALA LYS GLU THR LEU ILE LEU ARG SEQRES 9 A 261 LYS GLY GLU GLU ASN PHE LEU GLU ILE SER LEU GLN GLY SEQRES 10 A 261 THR ALA THR ARG THR PHE LYS LEU PRO LEU ILE ASP VAL SEQRES 11 A 261 GLU GLU ILE GLU VAL ASP LEU PRO GLU LEU PRO PHE THR SEQRES 12 A 261 ALA LYS VAL VAL ILE LEU GLY ASP VAL ILE LYS GLU ALA SEQRES 13 A 261 VAL LYS ASP ALA SER LEU VAL SER ASP SER MET LYS PHE SEQRES 14 A 261 ILE ALA LYS GLU ASN GLU PHE THR MET ARG ALA GLU GLY SEQRES 15 A 261 GLU THR GLN GLU VAL GLU VAL LYS LEU THR LEU GLU ASP SEQRES 16 A 261 GLU GLY LEU LEU ASP ILE GLU VAL GLN GLU GLU THR LYS SEQRES 17 A 261 SER ALA TYR GLY ILE SER TYR LEU SER ASP MET VAL LYS SEQRES 18 A 261 GLY LEU GLY LYS ALA ASP GLU VAL THR ILE LYS PHE GLY SEQRES 19 A 261 ASN GLU MET PRO MET GLN MET GLU TYR TYR ILE ARG ASP SEQRES 20 A 261 GLU GLY ARG LEU ILE PHE LEU LEU ALA PRO ARG VAL GLU SEQRES 21 A 261 GLU SEQRES 1 B 12 LYS LYS ARG VAL ILE SER LEU GLU GLU PHE PHE SER FORMUL 3 HOH *14(H2 O) HELIX 1 AA1 GLY A 9 ARG A 22 1 14 HELIX 2 AA2 SER A 56 PHE A 58 5 3 HELIX 3 AA3 MET A 73 ARG A 82 1 10 HELIX 4 AA4 GLY A 138 LEU A 150 1 13 HELIX 5 AA5 ILE A 201 LYS A 209 1 9 SHEET 1 AA1 5 LYS A 60 GLU A 62 0 SHEET 2 AA1 5 GLU A 4 PHE A 7 -1 N VAL A 6 O LYS A 60 SHEET 3 AA1 5 THR A 88 ARG A 92 -1 O LEU A 91 N ILE A 5 SHEET 4 AA1 5 PHE A 98 GLN A 104 -1 O GLU A 100 N ARG A 92 SHEET 5 AA1 5 THR A 108 PRO A 114 -1 O PHE A 111 N ILE A 101 SHEET 1 AA2 9 GLU A 66 ASN A 72 0 SHEET 2 AA2 9 GLU A 26 THR A 32 -1 N PHE A 29 O ILE A 69 SHEET 3 AA2 9 GLY A 35 MET A 41 -1 O SER A 37 N LYS A 30 SHEET 4 AA2 9 VAL A 47 PRO A 54 -1 O LEU A 53 N ILE A 36 SHEET 5 AA2 9 GLY A 237 LEU A 243 -1 O LEU A 242 N LEU A 48 SHEET 6 AA2 9 MET A 225 ILE A 233 -1 N MET A 227 O LEU A 243 SHEET 7 AA2 9 GLU A 216 GLY A 222 -1 N THR A 218 O GLU A 230 SHEET 8 AA2 9 ALA A 132 LEU A 137 -1 N VAL A 134 O ILE A 219 SHEET 9 AA2 9 ASP A 188 ILE A 189 -1 O ASP A 188 N VAL A 135 SHEET 1 AA3 4 GLU A 174 THR A 180 0 SHEET 2 AA3 4 GLU A 163 GLU A 169 -1 N PHE A 164 O LEU A 179 SHEET 3 AA3 4 SER A 154 LYS A 160 -1 N LYS A 156 O ARG A 167 SHEET 4 AA3 4 THR A 195 GLY A 200 -1 O SER A 197 N PHE A 157 CRYST1 140.736 140.736 38.521 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007106 0.004102 0.000000 0.00000 SCALE2 0.000000 0.008205 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025960 0.00000